Csor.00g047050 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g047050
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr15: 4415164 .. 4415442 (+)
RNA-Seq ExpressionCsor.00g047050
SyntenyCsor.00g047050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCAACTCCACAAGAAACCTCCCTAGATATGAAAATCAACTCGACAAGGATCCTGGAATCGGCAGTTTTACCTGGGGAGTCAGATTGCCTGCCAATTTACGTCAAAATGCAGAGGCCTTCTTCACCAGCCAAAATCCCTCAGCTTCAGAAGTCATTTCTTGGTCCAACTTTCCGGGCACTTTTAGCCTTGATTCTCAGTAGCTTGCCCTCTTCATCTCCACCATTTCCTATGGTTCTTTTCGGGGCTACTATGTTGATTGGCTTTGCAGTTTGA

mRNA sequence

ATGGCATCAACTCCACAAGAAACCTCCCTAGATATGAAAATCAACTCGACAAGGATCCTGGAATCGGCAGTTTTACCTGGGGAGTCAGATTGCCTGCCAATTTACGTCAAAATGCAGAGGCCTTCTTCACCAGCCAAAATCCCTCAGCTTCAGAAGTCATTTCTTGGTCCAACTTTCCGGGCACTTTTAGCCTTGATTCTCAGTAGCTTGCCCTCTTCATCTCCACCATTTCCTATGGTTCTTTTCGGGGCTACTATGTTGATTGGCTTTGCAGTTTGA

Coding sequence (CDS)

ATGGCATCAACTCCACAAGAAACCTCCCTAGATATGAAAATCAACTCGACAAGGATCCTGGAATCGGCAGTTTTACCTGGGGAGTCAGATTGCCTGCCAATTTACGTCAAAATGCAGAGGCCTTCTTCACCAGCCAAAATCCCTCAGCTTCAGAAGTCATTTCTTGGTCCAACTTTCCGGGCACTTTTAGCCTTGATTCTCAGTAGCTTGCCCTCTTCATCTCCACCATTTCCTATGGTTCTTTTCGGGGCTACTATGTTGATTGGCTTTGCAGTTTGA

Protein sequence

MASTPQETSLDMKINSTRILESAVLPGESDCLPIYVKMQRPSSPAKIPQLQKSFLGPTFRALLALILSSLPSSSPPFPMVLFGATMLIGFAV
Homology
BLAST of Csor.00g047050 vs. NCBI nr
Match: KAG6579133.1 (hypothetical protein SDJN03_23581, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174 bits (441), Expect = 1.34e-54
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0

Query: 1  MASTPQETSLDMKINSTRILESAVLPGESDCLPIYVKMQRPSSPAKIPQLQKSFLGPTFR 60
          MASTPQETSLDMKINSTRILESAVLPGESDCLPIYVKMQRPSSPAKIPQLQKSFLGPTFR
Sbjct: 1  MASTPQETSLDMKINSTRILESAVLPGESDCLPIYVKMQRPSSPAKIPQLQKSFLGPTFR 60

Query: 61 ALLALILSSLPSSSPPFPMVLFGATMLIGFAV 92
          ALLALILSSLPSSSPPFPMVLFGATMLIGFAV
Sbjct: 61 ALLALILSSLPSSSPPFPMVLFGATMLIGFAV 92

BLAST of Csor.00g047050 vs. NCBI nr
Match: XP_022146444.1 (uncharacterized protein LOC111015658 [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 1.77e-13
Identity = 54/106 (50.94%), Postives = 66/106 (62.26%), Query Frame = 0

Query: 1   MASTPQETSLDMK--------INSTRILESAVLPG-----ESDCLPIYVKMQRPSSPAKI 60
           MASTPQ+TS+DM         IN   +  S+   G      SDCLPI ++MQRP  PAK 
Sbjct: 1   MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPP-PAKS 60

Query: 61  PQ-LQKSFLGPTFRALLALILSSLPSSSPPFPMVLFGATMLIGFAV 92
            Q L K+ LG TF+A+LAL +S LPSS P  P +LFGA +LI FAV
Sbjct: 61  SQSLGKTILGLTFQAVLALFIS-LPSSPPQLPTLLFGAAVLISFAV 104

BLAST of Csor.00g047050 vs. NCBI nr
Match: KGN49806.1 (hypothetical protein Csa_004683 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 3.81e-12
Identity = 50/101 (49.50%), Postives = 57/101 (56.44%), Query Frame = 0

Query: 1   MASTP-QETSLDM-KINSTRILESAVLPG---------ESDCLPIYVKMQRPSSPAKIPQ 60
           MA TP  E SLDM K+NS     +   PG          SDCLPIY+KMQRPS P   PQ
Sbjct: 1   MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPS-PVNSPQ 60

Query: 61  LQKSFLGPTFRALLALILSSLPSSSPPFPMVLFGATMLIGF 90
              +FL  TF+A++ L LS  PSSS P P  LF A ML  F
Sbjct: 61  FGNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSF 100

BLAST of Csor.00g047050 vs. NCBI nr
Match: KAA0050244.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98162.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])

HSP 1 Score: 52.0 bits (123), Expect = 1.17e-05
Identity = 43/98 (43.88%), Postives = 50/98 (51.02%), Query Frame = 0

Query: 5  PQETSLDMKINSTRILESAVL---PG---------ESDCLPIYVKMQRPSSPAKIPQLQK 64
          P E SLDM  N      +AV    PG          SDCLPIY+KMQRPS P   PQ   
Sbjct: 6  PHEISLDM--NELYSFITAVTNRNPGISSCTWGTAASDCLPIYIKMQRPS-PVNSPQFGN 65

Query: 65 SFLGPTFRALLALILSSLPSSSPPFPMVLFGATMLIGF 90
          +F+   F+A+L L L+ LP S PP    L G  ML  F
Sbjct: 66 TFVSSNFQAILGLFLN-LPPSPPPLSE-LIGTVMLTAF 98

BLAST of Csor.00g047050 vs. NCBI nr
Match: KGN49808.1 (hypothetical protein Csa_004650 [Cucumis sativus])

HSP 1 Score: 52.0 bits (123), Expect = 1.20e-05
Identity = 42/103 (40.78%), Postives = 58/103 (56.31%), Query Frame = 0

Query: 1   MASTPQETSLDMKINSTRI---------LESAVLPGESDCLPIYVKMQR-PSSPAKIPQ- 60
           MAST  +TSLDM   S+ I         L     P  S+CLP++++MQ+ P + A   Q 
Sbjct: 1   MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTP--SNCLPVFIRMQQSPQATADSSQK 60

Query: 61  LQKSFLGPTFRALLALILSSLPSSSPPFPMVLFGATMLIGFAV 92
           L K  L  +F+A+LAL +SS P+S PP  +  F A + I FAV
Sbjct: 61  LGKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAV 101

BLAST of Csor.00g047050 vs. ExPASy TrEMBL
Match: A0A6J1CY58 (uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015658 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.57e-14
Identity = 54/106 (50.94%), Postives = 66/106 (62.26%), Query Frame = 0

Query: 1   MASTPQETSLDMK--------INSTRILESAVLPG-----ESDCLPIYVKMQRPSSPAKI 60
           MASTPQ+TS+DM         IN   +  S+   G      SDCLPI ++MQRP  PAK 
Sbjct: 1   MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPP-PAKS 60

Query: 61  PQ-LQKSFLGPTFRALLALILSSLPSSSPPFPMVLFGATMLIGFAV 92
            Q L K+ LG TF+A+LAL +S LPSS P  P +LFGA +LI FAV
Sbjct: 61  SQSLGKTILGLTFQAVLALFIS-LPSSPPQLPTLLFGAAVLISFAV 104

BLAST of Csor.00g047050 vs. ExPASy TrEMBL
Match: A0A0A0KQ03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.85e-12
Identity = 50/101 (49.50%), Postives = 57/101 (56.44%), Query Frame = 0

Query: 1   MASTP-QETSLDM-KINSTRILESAVLPG---------ESDCLPIYVKMQRPSSPAKIPQ 60
           MA TP  E SLDM K+NS     +   PG          SDCLPIY+KMQRPS P   PQ
Sbjct: 1   MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPS-PVNSPQ 60

Query: 61  LQKSFLGPTFRALLALILSSLPSSSPPFPMVLFGATMLIGF 90
              +FL  TF+A++ L LS  PSSS P P  LF A ML  F
Sbjct: 61  FGNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSF 100

BLAST of Csor.00g047050 vs. ExPASy TrEMBL
Match: A0A5D3BEH8 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00440 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.66e-06
Identity = 43/98 (43.88%), Postives = 50/98 (51.02%), Query Frame = 0

Query: 5  PQETSLDMKINSTRILESAVL---PG---------ESDCLPIYVKMQRPSSPAKIPQLQK 64
          P E SLDM  N      +AV    PG          SDCLPIY+KMQRPS P   PQ   
Sbjct: 6  PHEISLDM--NELYSFITAVTNRNPGISSCTWGTAASDCLPIYIKMQRPS-PVNSPQFGN 65

Query: 65 SFLGPTFRALLALILSSLPSSSPPFPMVLFGATMLIGF 90
          +F+   F+A+L L L+ LP S PP    L G  ML  F
Sbjct: 66 TFVSSNFQAILGLFLN-LPPSPPPLSE-LIGTVMLTAF 98

BLAST of Csor.00g047050 vs. ExPASy TrEMBL
Match: A0A0A0KJP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.83e-06
Identity = 42/103 (40.78%), Postives = 58/103 (56.31%), Query Frame = 0

Query: 1   MASTPQETSLDMKINSTRI---------LESAVLPGESDCLPIYVKMQR-PSSPAKIPQ- 60
           MAST  +TSLDM   S+ I         L     P  S+CLP++++MQ+ P + A   Q 
Sbjct: 1   MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTP--SNCLPVFIRMQQSPQATADSSQK 60

Query: 61  LQKSFLGPTFRALLALILSSLPSSSPPFPMVLFGATMLIGFAV 92
           L K  L  +F+A+LAL +SS P+S PP  +  F A + I FAV
Sbjct: 61  LGKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAV 101

BLAST of Csor.00g047050 vs. ExPASy TrEMBL
Match: A0A5A7U7U1 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00420 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 3.57e-04
Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 0

Query: 28 ESDCLPIYVKMQRPSSPAKIPQLQ----KSFLGPTFRALLALILSSLPSSSPPFPMVLFG 87
          E + LPI + MQRPS PA   + +    K+ LG TF+A+LAL ++S P+SSPP    LF 
Sbjct: 17 EINSLPICITMQRPS-PANSSKTENNVGKTILGLTFQAVLALFITS-PNSSPPLLTHLFA 76

Query: 88 ATMLIGFAV 92
          A +LI FAV
Sbjct: 77 AAVLISFAV 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6579133.11.34e-54100.00hypothetical protein SDJN03_23581, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022146444.11.77e-1350.94uncharacterized protein LOC111015658 [Momordica charantia][more]
KGN49806.13.81e-1249.50hypothetical protein Csa_004683 [Cucumis sativus][more]
KAA0050244.11.17e-0543.88putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... [more]
KGN49808.11.20e-0540.78hypothetical protein Csa_004650 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A6J1CY588.57e-1450.94uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A0A0KQ031.85e-1249.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1[more]
A0A5D3BEH85.66e-0643.88Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... [more]
A0A0A0KJP25.83e-0640.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1[more]
A0A5A7U7U13.57e-0449.28Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g047050.m01Csor.00g047050.m01mRNA