Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATCAACACCACAGCATGTTTCCATCGACATGAATCAATTCTGTCCCATCCAGGGAGCCTCAGATGGCTTACCACCTACCACCGCCATGCCCAGGCCGCCTCCGCCACCCGACAGCTCTCAGACTCGCAACAATCTTGGAAAGATAGTTTTCGGGCTTACTTTCCAGGCAGTTTTGGCTCTGTTCATCAGCCCACCCACCTCATGTCCTCCACTTTTGATGCATATCTTTGCGGCGGCTATGTTGATTAGCTTTGCACTTTCACTTGCTGCGCTTTTCCTTCAAATTGCATACCCAAGAATTGCGCTTTCCTCCGGCAAGATCGGTGCTCTGCTAGCTGCCATTGGTGCGTGCACCATTACTAGTGTTCTTCTTAAGCATCAGCATTTCAGTTGGATTCCTTGGCTCGCATGCGGCTTCGCCTTGATGGCCTTCATTCTATCATTCAAGTGA
mRNA sequence
ATGGGATCAACACCACAGCATGTTTCCATCGACATGAATCAATTCTGTCCCATCCAGGGAGCCTCAGATGGCTTACCACCTACCACCGCCATGCCCAGGCCGCCTCCGCCACCCGACAGCTCTCAGACTCGCAACAATCTTGGAAAGATAGTTTTCGGGCTTACTTTCCAGGCAGTTTTGGCTCTGTTCATCAGCCCACCCACCTCATGTCCTCCACTTTTGATGCATATCTTTGCGGCGGCTATGTTGATTAGCTTTGCACTTTCACTTGCTGCGCTTTTCCTTCAAATTGCATACCCAAGAATTGCGCTTTCCTCCGGCAAGATCGGTGCTCTGCTAGCTGCCATTGGTGCGTGCACCATTACTAGTGTTCTTCTTAAGCATCAGCATTTCAGTTGGATTCCTTGGCTCGCATGCGGCTTCGCCTTGATGGCCTTCATTCTATCATTCAAGTGA
Coding sequence (CDS)
ATGGGATCAACACCACAGCATGTTTCCATCGACATGAATCAATTCTGTCCCATCCAGGGAGCCTCAGATGGCTTACCACCTACCACCGCCATGCCCAGGCCGCCTCCGCCACCCGACAGCTCTCAGACTCGCAACAATCTTGGAAAGATAGTTTTCGGGCTTACTTTCCAGGCAGTTTTGGCTCTGTTCATCAGCCCACCCACCTCATGTCCTCCACTTTTGATGCATATCTTTGCGGCGGCTATGTTGATTAGCTTTGCACTTTCACTTGCTGCGCTTTTCCTTCAAATTGCATACCCAAGAATTGCGCTTTCCTCCGGCAAGATCGGTGCTCTGCTAGCTGCCATTGGTGCGTGCACCATTACTAGTGTTCTTCTTAAGCATCAGCATTTCAGTTGGATTCCTTGGCTCGCATGCGGCTTCGCCTTGATGGCCTTCATTCTATCATTCAAGTGA
Protein sequence
MGSTPQHVSIDMNQFCPIQGASDGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVLALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK
Homology
BLAST of Csor.00g047010 vs. NCBI nr
Match:
KAG6579137.1 (hypothetical protein SDJN03_23585, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 293 bits (751), Expect = 5.45e-100
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0
Query: 1 MGSTPQHVSIDMNQFCPIQGASDGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVL 60
MGSTPQHVSIDMNQFCPIQGASDGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVL
Sbjct: 1 MGSTPQHVSIDMNQFCPIQGASDGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVL 60
Query: 61 ALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACT 120
ALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACT
Sbjct: 61 ALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACT 120
Query: 121 ITSVLLKHQHFSWIPWLACGFALMAFILSFK 151
ITSVLLKHQHFSWIPWLACGFALMAFILSFK
Sbjct: 121 ITSVLLKHQHFSWIPWLACGFALMAFILSFK 151
BLAST of Csor.00g047010 vs. NCBI nr
Match:
KAG6579136.1 (hypothetical protein SDJN03_23584, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 210 bits (534), Expect = 4.35e-67
Identity = 118/151 (78.15%), Postives = 127/151 (84.11%), Query Frame = 0
Query: 1 MGSTPQHVSIDMNQFCPIQGASDGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVL 60
MGSTPQHVSIDMNQF IQGASDGL R P Q RNNLGKIVFGLTFQAVL
Sbjct: 1 MGSTPQHVSIDMNQFSSIQGASDGLH------REP------QARNNLGKIVFGLTFQAVL 60
Query: 61 ALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACT 120
ALFIS PTS PPLL+++FAAAMLIS ALSLAALFLQ A+PRIALS GKIGA+LAA+GAC
Sbjct: 61 ALFISTPTSFPPLLINLFAAAMLISLALSLAALFLQTAFPRIALSFGKIGAMLAAVGACI 120
Query: 121 ITSVLLKHQHFSWIPWLACGFALMAFILSFK 151
+ S+LLKHQ+FSWIPWLACGFALMAFILSFK
Sbjct: 121 MASLLLKHQNFSWIPWLACGFALMAFILSFK 139
BLAST of Csor.00g047010 vs. NCBI nr
Match:
KAG6579139.1 (hypothetical protein SDJN03_23587, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 201 bits (511), Expect = 1.39e-63
Identity = 112/151 (74.17%), Postives = 124/151 (82.12%), Query Frame = 0
Query: 1 MGSTPQHVSIDMNQFCPIQGASDGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVL 60
MGSTPQHVSI+MNQF QGASDGL R P Q RNNLGKIVFGLTFQAVL
Sbjct: 1 MGSTPQHVSINMNQFSSTQGASDGLH------REP------QARNNLGKIVFGLTFQAVL 60
Query: 61 ALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACT 120
ALFIS PTS PPL +++FAAA+LIS ALSLAALFLQ A+PRIALS GKIGA+LAA+GAC
Sbjct: 61 ALFISRPTSFPPLFINLFAAALLISLALSLAALFLQTAFPRIALSFGKIGAMLAAVGACI 120
Query: 121 ITSVLLKHQHFSWIPWLACGFALMAFILSFK 151
+ S+LLKHQ+FSWIPWLACGFA MAF+LSFK
Sbjct: 121 MASLLLKHQNFSWIPWLACGFAFMAFVLSFK 139
BLAST of Csor.00g047010 vs. NCBI nr
Match:
KGN49803.1 (hypothetical protein Csa_004681 [Cucumis sativus])
HSP 1 Score: 144 bits (363), Expect = 7.71e-41
Identity = 84/157 (53.50%), Postives = 110/157 (70.06%), Query Frame = 0
Query: 1 MGSTPQHVSIDMNQ-FCPIQGASDGLPPTTAMP-----RPPPPPDSSQTRNNLGKIVFGL 60
M S+ Q +SIDMN + I ++ P +P + P +SS+T NN+G + GL
Sbjct: 1 MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGL 60
Query: 61 TFQAVLALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLA 120
TFQAVLALFI+ TS PPLL H+F AA+LISFA+S +FLQ +PRIAL KIGAL+A
Sbjct: 61 TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120
Query: 121 AIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 151
AIG C + S+L+ HQ+F+WI WLACGF+LMAF+LSF+
Sbjct: 121 AIGVCILASLLI-HQNFAWISWLACGFSLMAFLLSFR 156
BLAST of Csor.00g047010 vs. NCBI nr
Match:
KAA0050246.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98160.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])
HSP 1 Score: 144 bits (362), Expect = 7.83e-41
Identity = 80/129 (62.02%), Postives = 100/129 (77.52%), Query Frame = 0
Query: 23 DGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVLALFISPPTSCPPLLMHIFAAAM 82
+ LP M RP P +SS+T NN+GK + GLTFQAVLALFI+ P S PPLL H+FAAA+
Sbjct: 19 NSLPICITMQRPSPA-NSSKTENNVGKTILGLTFQAVLALFITSPNSSPPLLTHLFAAAV 78
Query: 83 LISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFA 142
LISFA+S A +FLQ +PRIAL KIGAL+AAIG C + S+L+ HQ+F+WI WLA GF+
Sbjct: 79 LISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGVCIVASLLI-HQNFAWISWLASGFS 138
Query: 143 LMAFILSFK 151
LMAF+LSF+
Sbjct: 139 LMAFVLSFR 145
BLAST of Csor.00g047010 vs. ExPASy TrEMBL
Match:
A0A0A0KJN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1)
HSP 1 Score: 144 bits (363), Expect = 3.73e-41
Identity = 84/157 (53.50%), Postives = 110/157 (70.06%), Query Frame = 0
Query: 1 MGSTPQHVSIDMNQ-FCPIQGASDGLPPTTAMP-----RPPPPPDSSQTRNNLGKIVFGL 60
M S+ Q +SIDMN + I ++ P +P + P +SS+T NN+G + GL
Sbjct: 1 MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGL 60
Query: 61 TFQAVLALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLA 120
TFQAVLALFI+ TS PPLL H+F AA+LISFA+S +FLQ +PRIAL KIGAL+A
Sbjct: 61 TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120
Query: 121 AIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 151
AIG C + S+L+ HQ+F+WI WLACGF+LMAF+LSF+
Sbjct: 121 AIGVCILASLLI-HQNFAWISWLACGFSLMAFLLSFR 156
BLAST of Csor.00g047010 vs. ExPASy TrEMBL
Match:
A0A5A7U7U1 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00420 PE=4 SV=1)
HSP 1 Score: 144 bits (362), Expect = 3.79e-41
Identity = 80/129 (62.02%), Postives = 100/129 (77.52%), Query Frame = 0
Query: 23 DGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVLALFISPPTSCPPLLMHIFAAAM 82
+ LP M RP P +SS+T NN+GK + GLTFQAVLALFI+ P S PPLL H+FAAA+
Sbjct: 19 NSLPICITMQRPSPA-NSSKTENNVGKTILGLTFQAVLALFITSPNSSPPLLTHLFAAAV 78
Query: 83 LISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFA 142
LISFA+S A +FLQ +PRIAL KIGAL+AAIG C + S+L+ HQ+F+WI WLA GF+
Sbjct: 79 LISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGVCIVASLLI-HQNFAWISWLASGFS 138
Query: 143 LMAFILSFK 151
LMAF+LSF+
Sbjct: 139 LMAFVLSFR 145
BLAST of Csor.00g047010 vs. ExPASy TrEMBL
Match:
A0A0A0KJP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1)
HSP 1 Score: 123 bits (309), Expect = 6.87e-33
Identity = 83/167 (49.70%), Postives = 103/167 (61.68%), Query Frame = 0
Query: 1 MGSTPQHVSIDMNQFCP----IQGASDGL----PPTTAMP-------RPPPPPDSSQTRN 60
M ST S+DM+ F I + GL P+ +P P DSSQ
Sbjct: 1 MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSSQ--- 60
Query: 61 NLGKIVFGLTFQAVLALFIS-PPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIAL 120
LGKI+ L+FQAVLALFIS PPTS PPLL+H FAAA+ ISFA+S AALFL ++PR A
Sbjct: 61 KLGKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAH 120
Query: 121 SSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 151
K+GAL +A G C I S LL HQ+F+WI W+AC F+++ F LSFK
Sbjct: 121 LFEKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164
BLAST of Csor.00g047010 vs. ExPASy TrEMBL
Match:
A0A0A0KQ03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1)
HSP 1 Score: 85.5 bits (210), Expect = 5.23e-18
Identity = 72/170 (42.35%), Postives = 89/170 (52.35%), Query Frame = 0
Query: 1 MGSTPQH-VSIDMNQF----------------CPIQGA-SDGLPPTTAMPRPPPPPDSSQ 60
M TP H +S+DMN+ C GA SD LP M RP P +S Q
Sbjct: 1 MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPV-NSPQ 60
Query: 61 TRNNLGKIVFGLTFQAVLALFIS-PPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPR 120
G LTFQA++ LF+S P+S PL +FAA ML SF S + LQ +P+
Sbjct: 61 ----FGNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPK 120
Query: 121 IALSSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 151
A GAL AAIG C I S+LL + +F+WI WLA G L AFI+SFK
Sbjct: 121 TAQLLQTFGALFAAIGTCIIGSLLL-YPNFTWICWLAAGLILPAFIISFK 164
BLAST of Csor.00g047010 vs. ExPASy TrEMBL
Match:
A0A6J1CY58 (uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015658 PE=4 SV=1)
HSP 1 Score: 83.6 bits (205), Expect = 1.39e-17
Identity = 59/124 (47.58%), Postives = 70/124 (56.45%), Query Frame = 0
Query: 1 MGSTPQHVSIDMNQFCPIQGA--------------------SDGLPPTTAMPRPPPPPDS 60
M STPQ S+DMN A SD LP M RPPP
Sbjct: 1 MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPP---- 60
Query: 61 SQTRNNLGKIVFGLTFQAVLALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYP 104
+++ +LGK + GLTFQAVLALFIS P+S P L +F AA+LISFA+S A LFLQ AYP
Sbjct: 61 AKSSQSLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLISFAVSFAGLFLQTAYP 120
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6579137.1 | 5.45e-100 | 100.00 | hypothetical protein SDJN03_23585, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6579136.1 | 4.35e-67 | 78.15 | hypothetical protein SDJN03_23584, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6579139.1 | 1.39e-63 | 74.17 | hypothetical protein SDJN03_23587, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KGN49803.1 | 7.71e-41 | 53.50 | hypothetical protein Csa_004681 [Cucumis sativus] | [more] |
KAA0050246.1 | 7.83e-41 | 62.02 | putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0KJN8 | 3.73e-41 | 53.50 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1 | [more] |
A0A5A7U7U1 | 3.79e-41 | 62.02 | Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A0A0KJP2 | 6.87e-33 | 49.70 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1 | [more] |
A0A0A0KQ03 | 5.23e-18 | 42.35 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1 | [more] |
A0A6J1CY58 | 1.39e-17 | 47.58 | uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015... | [more] |
Match Name | E-value | Identity | Description | |