Csor.00g047010 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g047010
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionIleal sodium/bile acid cotransporter, putative
LocationCsor_Chr15: 4436292 .. 4436747 (-)
RNA-Seq ExpressionCsor.00g047010
SyntenyCsor.00g047010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATCAACACCACAGCATGTTTCCATCGACATGAATCAATTCTGTCCCATCCAGGGAGCCTCAGATGGCTTACCACCTACCACCGCCATGCCCAGGCCGCCTCCGCCACCCGACAGCTCTCAGACTCGCAACAATCTTGGAAAGATAGTTTTCGGGCTTACTTTCCAGGCAGTTTTGGCTCTGTTCATCAGCCCACCCACCTCATGTCCTCCACTTTTGATGCATATCTTTGCGGCGGCTATGTTGATTAGCTTTGCACTTTCACTTGCTGCGCTTTTCCTTCAAATTGCATACCCAAGAATTGCGCTTTCCTCCGGCAAGATCGGTGCTCTGCTAGCTGCCATTGGTGCGTGCACCATTACTAGTGTTCTTCTTAAGCATCAGCATTTCAGTTGGATTCCTTGGCTCGCATGCGGCTTCGCCTTGATGGCCTTCATTCTATCATTCAAGTGA

mRNA sequence

ATGGGATCAACACCACAGCATGTTTCCATCGACATGAATCAATTCTGTCCCATCCAGGGAGCCTCAGATGGCTTACCACCTACCACCGCCATGCCCAGGCCGCCTCCGCCACCCGACAGCTCTCAGACTCGCAACAATCTTGGAAAGATAGTTTTCGGGCTTACTTTCCAGGCAGTTTTGGCTCTGTTCATCAGCCCACCCACCTCATGTCCTCCACTTTTGATGCATATCTTTGCGGCGGCTATGTTGATTAGCTTTGCACTTTCACTTGCTGCGCTTTTCCTTCAAATTGCATACCCAAGAATTGCGCTTTCCTCCGGCAAGATCGGTGCTCTGCTAGCTGCCATTGGTGCGTGCACCATTACTAGTGTTCTTCTTAAGCATCAGCATTTCAGTTGGATTCCTTGGCTCGCATGCGGCTTCGCCTTGATGGCCTTCATTCTATCATTCAAGTGA

Coding sequence (CDS)

ATGGGATCAACACCACAGCATGTTTCCATCGACATGAATCAATTCTGTCCCATCCAGGGAGCCTCAGATGGCTTACCACCTACCACCGCCATGCCCAGGCCGCCTCCGCCACCCGACAGCTCTCAGACTCGCAACAATCTTGGAAAGATAGTTTTCGGGCTTACTTTCCAGGCAGTTTTGGCTCTGTTCATCAGCCCACCCACCTCATGTCCTCCACTTTTGATGCATATCTTTGCGGCGGCTATGTTGATTAGCTTTGCACTTTCACTTGCTGCGCTTTTCCTTCAAATTGCATACCCAAGAATTGCGCTTTCCTCCGGCAAGATCGGTGCTCTGCTAGCTGCCATTGGTGCGTGCACCATTACTAGTGTTCTTCTTAAGCATCAGCATTTCAGTTGGATTCCTTGGCTCGCATGCGGCTTCGCCTTGATGGCCTTCATTCTATCATTCAAGTGA

Protein sequence

MGSTPQHVSIDMNQFCPIQGASDGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVLALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK
Homology
BLAST of Csor.00g047010 vs. NCBI nr
Match: KAG6579137.1 (hypothetical protein SDJN03_23585, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 293 bits (751), Expect = 5.45e-100
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0

Query: 1   MGSTPQHVSIDMNQFCPIQGASDGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVL 60
           MGSTPQHVSIDMNQFCPIQGASDGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVL
Sbjct: 1   MGSTPQHVSIDMNQFCPIQGASDGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVL 60

Query: 61  ALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACT 120
           ALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACT
Sbjct: 61  ALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACT 120

Query: 121 ITSVLLKHQHFSWIPWLACGFALMAFILSFK 151
           ITSVLLKHQHFSWIPWLACGFALMAFILSFK
Sbjct: 121 ITSVLLKHQHFSWIPWLACGFALMAFILSFK 151

BLAST of Csor.00g047010 vs. NCBI nr
Match: KAG6579136.1 (hypothetical protein SDJN03_23584, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 210 bits (534), Expect = 4.35e-67
Identity = 118/151 (78.15%), Postives = 127/151 (84.11%), Query Frame = 0

Query: 1   MGSTPQHVSIDMNQFCPIQGASDGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVL 60
           MGSTPQHVSIDMNQF  IQGASDGL       R P      Q RNNLGKIVFGLTFQAVL
Sbjct: 1   MGSTPQHVSIDMNQFSSIQGASDGLH------REP------QARNNLGKIVFGLTFQAVL 60

Query: 61  ALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACT 120
           ALFIS PTS PPLL+++FAAAMLIS ALSLAALFLQ A+PRIALS GKIGA+LAA+GAC 
Sbjct: 61  ALFISTPTSFPPLLINLFAAAMLISLALSLAALFLQTAFPRIALSFGKIGAMLAAVGACI 120

Query: 121 ITSVLLKHQHFSWIPWLACGFALMAFILSFK 151
           + S+LLKHQ+FSWIPWLACGFALMAFILSFK
Sbjct: 121 MASLLLKHQNFSWIPWLACGFALMAFILSFK 139

BLAST of Csor.00g047010 vs. NCBI nr
Match: KAG6579139.1 (hypothetical protein SDJN03_23587, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201 bits (511), Expect = 1.39e-63
Identity = 112/151 (74.17%), Postives = 124/151 (82.12%), Query Frame = 0

Query: 1   MGSTPQHVSIDMNQFCPIQGASDGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVL 60
           MGSTPQHVSI+MNQF   QGASDGL       R P      Q RNNLGKIVFGLTFQAVL
Sbjct: 1   MGSTPQHVSINMNQFSSTQGASDGLH------REP------QARNNLGKIVFGLTFQAVL 60

Query: 61  ALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACT 120
           ALFIS PTS PPL +++FAAA+LIS ALSLAALFLQ A+PRIALS GKIGA+LAA+GAC 
Sbjct: 61  ALFISRPTSFPPLFINLFAAALLISLALSLAALFLQTAFPRIALSFGKIGAMLAAVGACI 120

Query: 121 ITSVLLKHQHFSWIPWLACGFALMAFILSFK 151
           + S+LLKHQ+FSWIPWLACGFA MAF+LSFK
Sbjct: 121 MASLLLKHQNFSWIPWLACGFAFMAFVLSFK 139

BLAST of Csor.00g047010 vs. NCBI nr
Match: KGN49803.1 (hypothetical protein Csa_004681 [Cucumis sativus])

HSP 1 Score: 144 bits (363), Expect = 7.71e-41
Identity = 84/157 (53.50%), Postives = 110/157 (70.06%), Query Frame = 0

Query: 1   MGSTPQHVSIDMNQ-FCPIQGASDGLPPTTAMP-----RPPPPPDSSQTRNNLGKIVFGL 60
           M S+ Q +SIDMN  +  I   ++  P    +P     +   P +SS+T NN+G  + GL
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGL 60

Query: 61  TFQAVLALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLA 120
           TFQAVLALFI+  TS PPLL H+F AA+LISFA+S   +FLQ  +PRIAL   KIGAL+A
Sbjct: 61  TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120

Query: 121 AIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 151
           AIG C + S+L+ HQ+F+WI WLACGF+LMAF+LSF+
Sbjct: 121 AIGVCILASLLI-HQNFAWISWLACGFSLMAFLLSFR 156

BLAST of Csor.00g047010 vs. NCBI nr
Match: KAA0050246.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98160.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (362), Expect = 7.83e-41
Identity = 80/129 (62.02%), Postives = 100/129 (77.52%), Query Frame = 0

Query: 23  DGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVLALFISPPTSCPPLLMHIFAAAM 82
           + LP    M RP P  +SS+T NN+GK + GLTFQAVLALFI+ P S PPLL H+FAAA+
Sbjct: 19  NSLPICITMQRPSPA-NSSKTENNVGKTILGLTFQAVLALFITSPNSSPPLLTHLFAAAV 78

Query: 83  LISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFA 142
           LISFA+S A +FLQ  +PRIAL   KIGAL+AAIG C + S+L+ HQ+F+WI WLA GF+
Sbjct: 79  LISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGVCIVASLLI-HQNFAWISWLASGFS 138

Query: 143 LMAFILSFK 151
           LMAF+LSF+
Sbjct: 139 LMAFVLSFR 145

BLAST of Csor.00g047010 vs. ExPASy TrEMBL
Match: A0A0A0KJN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1)

HSP 1 Score: 144 bits (363), Expect = 3.73e-41
Identity = 84/157 (53.50%), Postives = 110/157 (70.06%), Query Frame = 0

Query: 1   MGSTPQHVSIDMNQ-FCPIQGASDGLPPTTAMP-----RPPPPPDSSQTRNNLGKIVFGL 60
           M S+ Q +SIDMN  +  I   ++  P    +P     +   P +SS+T NN+G  + GL
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGL 60

Query: 61  TFQAVLALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLA 120
           TFQAVLALFI+  TS PPLL H+F AA+LISFA+S   +FLQ  +PRIAL   KIGAL+A
Sbjct: 61  TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120

Query: 121 AIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 151
           AIG C + S+L+ HQ+F+WI WLACGF+LMAF+LSF+
Sbjct: 121 AIGVCILASLLI-HQNFAWISWLACGFSLMAFLLSFR 156

BLAST of Csor.00g047010 vs. ExPASy TrEMBL
Match: A0A5A7U7U1 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00420 PE=4 SV=1)

HSP 1 Score: 144 bits (362), Expect = 3.79e-41
Identity = 80/129 (62.02%), Postives = 100/129 (77.52%), Query Frame = 0

Query: 23  DGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVLALFISPPTSCPPLLMHIFAAAM 82
           + LP    M RP P  +SS+T NN+GK + GLTFQAVLALFI+ P S PPLL H+FAAA+
Sbjct: 19  NSLPICITMQRPSPA-NSSKTENNVGKTILGLTFQAVLALFITSPNSSPPLLTHLFAAAV 78

Query: 83  LISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFA 142
           LISFA+S A +FLQ  +PRIAL   KIGAL+AAIG C + S+L+ HQ+F+WI WLA GF+
Sbjct: 79  LISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGVCIVASLLI-HQNFAWISWLASGFS 138

Query: 143 LMAFILSFK 151
           LMAF+LSF+
Sbjct: 139 LMAFVLSFR 145

BLAST of Csor.00g047010 vs. ExPASy TrEMBL
Match: A0A0A0KJP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1)

HSP 1 Score: 123 bits (309), Expect = 6.87e-33
Identity = 83/167 (49.70%), Postives = 103/167 (61.68%), Query Frame = 0

Query: 1   MGSTPQHVSIDMNQFCP----IQGASDGL----PPTTAMP-------RPPPPPDSSQTRN 60
           M ST    S+DM+ F      I   + GL     P+  +P        P    DSSQ   
Sbjct: 1   MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSSQ--- 60

Query: 61  NLGKIVFGLTFQAVLALFIS-PPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIAL 120
            LGKI+  L+FQAVLALFIS PPTS PPLL+H FAAA+ ISFA+S AALFL  ++PR A 
Sbjct: 61  KLGKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAH 120

Query: 121 SSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 151
              K+GAL +A G C I S LL HQ+F+WI W+AC F+++ F LSFK
Sbjct: 121 LFEKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

BLAST of Csor.00g047010 vs. ExPASy TrEMBL
Match: A0A0A0KQ03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.23e-18
Identity = 72/170 (42.35%), Postives = 89/170 (52.35%), Query Frame = 0

Query: 1   MGSTPQH-VSIDMNQF----------------CPIQGA-SDGLPPTTAMPRPPPPPDSSQ 60
           M  TP H +S+DMN+                 C   GA SD LP    M RP P  +S Q
Sbjct: 1   MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPV-NSPQ 60

Query: 61  TRNNLGKIVFGLTFQAVLALFIS-PPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPR 120
                G     LTFQA++ LF+S  P+S  PL   +FAA ML SF  S   + LQ  +P+
Sbjct: 61  ----FGNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPK 120

Query: 121 IALSSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 151
            A      GAL AAIG C I S+LL + +F+WI WLA G  L AFI+SFK
Sbjct: 121 TAQLLQTFGALFAAIGTCIIGSLLL-YPNFTWICWLAAGLILPAFIISFK 164

BLAST of Csor.00g047010 vs. ExPASy TrEMBL
Match: A0A6J1CY58 (uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015658 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.39e-17
Identity = 59/124 (47.58%), Postives = 70/124 (56.45%), Query Frame = 0

Query: 1   MGSTPQHVSIDMNQFCPIQGA--------------------SDGLPPTTAMPRPPPPPDS 60
           M STPQ  S+DMN       A                    SD LP    M RPPP    
Sbjct: 1   MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPP---- 60

Query: 61  SQTRNNLGKIVFGLTFQAVLALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYP 104
           +++  +LGK + GLTFQAVLALFIS P+S P L   +F AA+LISFA+S A LFLQ AYP
Sbjct: 61  AKSSQSLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLISFAVSFAGLFLQTAYP 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6579137.15.45e-100100.00hypothetical protein SDJN03_23585, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6579136.14.35e-6778.15hypothetical protein SDJN03_23584, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6579139.11.39e-6374.17hypothetical protein SDJN03_23587, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN49803.17.71e-4153.50hypothetical protein Csa_004681 [Cucumis sativus][more]
KAA0050246.17.83e-4162.02putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... [more]
Match NameE-valueIdentityDescription
A0A0A0KJN83.73e-4153.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1[more]
A0A5A7U7U13.79e-4162.02Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... [more]
A0A0A0KJP26.87e-3349.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1[more]
A0A0A0KQ035.23e-1842.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1[more]
A0A6J1CY581.39e-1747.58uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g047010.m01Csor.00g047010.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane