Csor.00g046800 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g046800
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr19: 2861034 .. 2861414 (-)
RNA-Seq Expression	Csor.00g046800
Synteny	Csor.00g046800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAATCAATTTCCTCCTGCAAGAATCGAAGATTCCGGACTTCCGTCTTCTCCGATTCTGAAATCGACGTCGCAATACAGCTTCTTCATCTAAGCGAAGACTCCGATTACCTCGCCAACACCATCGCGTCCTCTACCAGTTGCAGCGATGACAAATCAGTCGCCTCCGCCACCAGCGCCACCAACGCTGCTGGAATGGAAGACGATGGAAGCCACAGCAGCAGCCGCCGCGGAGCCACTCTTGTGCCTACAACCTCTCTGATAGAAGACATCTTCGAGGAAATCGGAGACAGTTCGAATCGGAGGCGGAGGAAGCGCCGGTCGCGTTCGGTTTACGAGATTTACAAATTGACGAAGCCTTTTATCTCCGTGAAATAA

mRNA sequence

ATGGCGAAATCAATTTCCTCCTGCAAGAATCGAAGATTCCGGACTTCCGTCTTCTCCGATTCTGAAATCGACGTCGCAATACAGCTTCTTCATCTAAGCGAAGACTCCGATTACCTCGCCAACACCATCGCGTCCTCTACCAGTTGCAGCGATGACAAATCAGTCGCCTCCGCCACCAGCGCCACCAACGCTGCTGGAATGGAAGACGATGGAAGCCACAGCAGCAGCCGCCGCGGAGCCACTCTTGTGCCTACAACCTCTCTGATAGAAGACATCTTCGAGGAAATCGGAGACAGTTCGAATCGGAGGCGGAGGAAGCGCCGGTCGCGTTCGGTTTACGAGATTTACAAATTGACGAAGCCTTTTATCTCCGTGAAATAA

Coding sequence (CDS)

ATGGCGAAATCAATTTCCTCCTGCAAGAATCGAAGATTCCGGACTTCCGTCTTCTCCGATTCTGAAATCGACGTCGCAATACAGCTTCTTCATCTAAGCGAAGACTCCGATTACCTCGCCAACACCATCGCGTCCTCTACCAGTTGCAGCGATGACAAATCAGTCGCCTCCGCCACCAGCGCCACCAACGCTGCTGGAATGGAAGACGATGGAAGCCACAGCAGCAGCCGCCGCGGAGCCACTCTTGTGCCTACAACCTCTCTGATAGAAGACATCTTCGAGGAAATCGGAGACAGTTCGAATCGGAGGCGGAGGAAGCGCCGGTCGCGTTCGGTTTACGAGATTTACAAATTGACGAAGCCTTTTATCTCCGTGAAATAA

Protein sequence

MAKSISSCKNRRFRTSVFSDSEIDVAIQLLHLSEDSDYLANTIASSTSCSDDKSVASATSATNAAGMEDDGSHSSSRRGATLVPTTSLIEDIFEEIGDSSNRRRRKRRSRSVYEIYKLTKPFISVK

Homology

[Close]

BLAST of Csor.00g046800 vs. NCBI nr
Match: KAG6571728.1 (hypothetical protein SDJN03_28456, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229 bits (584), Expect = 2.48e-75
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MAKSISSCKNRRFRTSVFSDSEIDVAIQLLHLSEDSDYLANTIASSTSCSDDKSVASATS 60
           MAKSISSCKNRRFRTSVFSDSEIDVAIQLLHLSEDSDYLANTIASSTSCSDDKSVASATS
Sbjct: 1   MAKSISSCKNRRFRTSVFSDSEIDVAIQLLHLSEDSDYLANTIASSTSCSDDKSVASATS 60

Query: 61  ATNAAGMEDDGSHSSSRRGATLVPTTSLIEDIFEEIGDSSNRRRRKRRSRSVYEIYKLTK 120
           ATNAAGMEDDGSHSSSRRGATLVPTTSLIEDIFEEIGDSSNRRRRKRRSRSVYEIYKLTK
Sbjct: 61  ATNAAGMEDDGSHSSSRRGATLVPTTSLIEDIFEEIGDSSNRRRRKRRSRSVYEIYKLTK 120

Query: 121 PFISVK 126
           PFISVK
Sbjct: 121 PFISVK 126

[Close]

BLAST of Csor.00g046800 vs. NCBI nr
Match: KAG6588821.1 (hypothetical protein SDJN03_17386, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147 bits (372), Expect = 4.12e-43
Identity = 88/126 (69.84%), Postives = 103/126 (81.75%), Query Frame = 0


Query: 1   MAKSISSCKNRRFRTSVFSDSEIDVAIQLLHLSEDSDYLANTIASSTSCSDDKSVASATS 60
           MA+S+S+ +NRRF+TS+FSDSEIDVAIQL+HLSEDSDY     ASSTSCSDDKS+ASA++
Sbjct: 1   MAESVSTSRNRRFQTSIFSDSEIDVAIQLIHLSEDSDYHDELPASSTSCSDDKSLASASN 60

Query: 61  ATNAAGMEDDGSHSSSRRGATLVPTTSLIEDIFEEIGDSSNRRRRKRRSRSVYEIYKLTK 120
           + NA  MEDDG  ++ RRG    P    IEDI+EEIGD +NRRRRKRRSRSVYEIYKLTK
Sbjct: 61  S-NADEMEDDG-RNNGRRGTKTTP----IEDIYEEIGDGANRRRRKRRSRSVYEIYKLTK 120

Query: 121 PFISVK 126
           P I VK
Sbjct: 121 PVIFVK 120

The following BLAST results are available for this feature:

BLAST of Csor.00g046800 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g046800 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571728.1	2.48e-75	100.00	hypothetical protein SDJN03_28456, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6588821.1	4.12e-43	69.84	hypothetical protein SDJN03_17386, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g046800 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g046800 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g046800.m01	Csor.00g046800.m01	mRNA