Csor.00g046790 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g046790
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr19: 2860530 .. 2860857 (+)
RNA-Seq ExpressionCsor.00g046790
SyntenyCsor.00g046790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCCAGGGGCACTGAATCGGAAGCCGTCAATGGAAAAAGAAGAGGGCGTAAAGCGAGGAAGAGAGGAAGCTAGGGCGGAGAAAACCAAACGTAGCGATAACCAGGTAATGATAATGCTACAGTTGATTTTACAAATCAAATTCAAGCATTCAATCAAATTTTCAATTGATCCACATTCTTCAAGCGCTAACAACTACTGTGTTCATCTTAACAAAAACTTCACAGGAAAAGGAGTTTAAGAAAAAGCAGCGAAATACACAAGCAATGATCGCACACAATATACCTTCTGCACATCTTCCAGTGAACCAGCAACGAAAAAGTTAA

mRNA sequence

ATGGACCCAGGGGCACTGAATCGGAAGCCGTCAATGGAAAAAGAAGAGGGCGTAAAGCGAGGAAGAGAGGAAGCTAGGGCGGAGAAAACCAAACGTAGCGATAACCAGGAAAAGGAGTTTAAGAAAAAGCAGCGAAATACACAAGCAATGATCGCACACAATATACCTTCTGCACATCTTCCAGTGAACCAGCAACGAAAAAGTTAA

Coding sequence (CDS)

ATGGACCCAGGGGCACTGAATCGGAAGCCGTCAATGGAAAAAGAAGAGGGCGTAAAGCGAGGAAGAGAGGAAGCTAGGGCGGAGAAAACCAAACGTAGCGATAACCAGGAAAAGGAGTTTAAGAAAAAGCAGCGAAATACACAAGCAATGATCGCACACAATATACCTTCTGCACATCTTCCAGTGAACCAGCAACGAAAAAGTTAA

Protein sequence

MDPGALNRKPSMEKEEGVKRGREEARAEKTKRSDNQEKEFKKKQRNTQAMIAHNIPSAHLPVNQQRKS
Homology
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BLAST of Csor.00g046790 vs. NCBI nr
Match: KAG6571727.1 (hypothetical protein SDJN03_28455, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127 bits (319), Expect = 1.01e-36
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MDPGALNRKPSMEKEEGVKRGREEARAEKTKRSDNQEKEFKKKQRNTQAMIAHNIPSAHL 60
          MDPGALNRKPSMEKEEGVKRGREEARAEKTKRSDNQEKEFKKKQRNTQAMIAHNIPSAHL
Sbjct: 1  MDPGALNRKPSMEKEEGVKRGREEARAEKTKRSDNQEKEFKKKQRNTQAMIAHNIPSAHL 60

Query: 61 PVNQQRKS 68
          PVNQQRKS
Sbjct: 61 PVNQQRKS 68

The following BLAST results are available for this feature:
BLAST of Csor.00g046790 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g046790 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571727.11.01e-36100.00hypothetical protein SDJN03_28455, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g046790 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g046790 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 26..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g046790.m01Csor.00g046790.m01mRNA