Csor.00g046490 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g046490
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionC3HC-type domain-containing protein
LocationCsor_Chr18: 157095 .. 157381 (-)
RNA-Seq ExpressionCsor.00g046490
SyntenyCsor.00g046490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGAAGCCCTTCCTAACTCAAATTCCGCATCACTCTTCGCCACATTCACCTAAGAACTCTCCATCGGGTTCTCTTATTAAGGTACGTAAAGAACTTCTGGTTATATTTTGGAGCAATGCAGATGTTGACTCGAGATTTTCTGTGACTTTCATCTCCAGGAAATCATTGCAAAACTCTGTTTCCTTTTCCAGGTTGATGCCCCCGTTAGATCGGTTCCAAATCTATTCACATCTTCTGCAAAGAAATTGAAATGTAGTCTTTCTAACGAGAACACCAAGCGCTAG

mRNA sequence

ATGCAGAAGCCCTTCCTAACTCAAATTCCGCATCACTCTTCGCCACATTCACCTAAGAACTCTCCATCGGGTTCTCTTATTAAGGAAATCATTGCAAAACTCTGTTTCCTTTTCCAGGTTGATGCCCCCGTTAGATCGGTTCCAAATCTATTCACATCTTCTGCAAAGAAATTGAAATGTAGTCTTTCTAACGAGAACACCAAGCGCTAG

Coding sequence (CDS)

ATGCAGAAGCCCTTCCTAACTCAAATTCCGCATCACTCTTCGCCACATTCACCTAAGAACTCTCCATCGGGTTCTCTTATTAAGGAAATCATTGCAAAACTCTGTTTCCTTTTCCAGGTTGATGCCCCCGTTAGATCGGTTCCAAATCTATTCACATCTTCTGCAAAGAAATTGAAATGTAGTCTTTCTAACGAGAACACCAAGCGCTAG

Protein sequence

MQKPFLTQIPHHSSPHSPKNSPSGSLIKEIIAKLCFLFQVDAPVRSVPNLFTSSAKKLKCSLSNENTKR
Homology
BLAST of Csor.00g046490 vs. NCBI nr
Match: KAG6572924.1 (hypothetical protein SDJN03_26811, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141 bits (356), Expect = 2.44e-42
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0

Query: 1  MQKPFLTQIPHHSSPHSPKNSPSGSLIKEIIAKLCFLFQVDAPVRSVPNLFTSSAKKLKC 60
          MQKPFLTQIPHHSSPHSPKNSPSGSLIKEIIAKLCFLFQVDAPVRSVPNLFTSSAKKLKC
Sbjct: 1  MQKPFLTQIPHHSSPHSPKNSPSGSLIKEIIAKLCFLFQVDAPVRSVPNLFTSSAKKLKC 60

Query: 61 SLSNENTKR 69
          SLSNENTKR
Sbjct: 61 SLSNENTKR 69

BLAST of Csor.00g046490 vs. NCBI nr
Match: XP_023000722.1 (uncharacterized protein LOC111495084 [Cucurbita maxima])

HSP 1 Score: 64.3 bits (155), Expect = 6.54e-10
Identity = 41/63 (65.08%), Postives = 43/63 (68.25%), Query Frame = 0

Query: 8   QIPHHSSPHSPKNSPSGSLIKEIIAKLCFLFQVDAPVRSVPNLFTSSAKKLKCSL-SNEN 67
           Q  + SSPHSPKNSPS SLIK           VD PV SV NLFTSSAKKLK SL SNE+
Sbjct: 717 QRENSSSPHSPKNSPSASLIK-----------VDDPVTSVRNLFTSSAKKLKSSLVSNES 768

Query: 68  TKR 69
           TKR
Sbjct: 777 TKR 768

BLAST of Csor.00g046490 vs. NCBI nr
Match: XP_022924046.1 (uncharacterized protein LOC111431594 [Cucurbita moschata])

HSP 1 Score: 64.3 bits (155), Expect = 6.54e-10
Identity = 41/63 (65.08%), Postives = 43/63 (68.25%), Query Frame = 0

Query: 8   QIPHHSSPHSPKNSPSGSLIKEIIAKLCFLFQVDAPVRSVPNLFTSSAKKLKCSL-SNEN 67
           Q  + SSPHSPKNSPS SLIK           VD PV SV NLFTSSAKKLK SL SNE+
Sbjct: 717 QRENSSSPHSPKNSPSASLIK-----------VDDPVTSVRNLFTSSAKKLKSSLVSNES 768

Query: 68  TKR 69
           TKR
Sbjct: 777 TKR 768

BLAST of Csor.00g046490 vs. NCBI nr
Match: KAG6584377.1 (NIPA-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.3 bits (155), Expect = 6.54e-10
Identity = 41/63 (65.08%), Postives = 43/63 (68.25%), Query Frame = 0

Query: 8   QIPHHSSPHSPKNSPSGSLIKEIIAKLCFLFQVDAPVRSVPNLFTSSAKKLKCSL-SNEN 67
           Q  + SSPHSPKNSPS SLIK           VD PV SV NLFTSSAKKLK SL SNE+
Sbjct: 717 QRENSSSPHSPKNSPSASLIK-----------VDDPVTSVRNLFTSSAKKLKSSLVSNES 768

Query: 68  TKR 69
           TKR
Sbjct: 777 TKR 768

BLAST of Csor.00g046490 vs. NCBI nr
Match: XP_023519717.1 (uncharacterized protein LOC111783071 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 64.3 bits (155), Expect = 6.54e-10
Identity = 41/63 (65.08%), Postives = 43/63 (68.25%), Query Frame = 0

Query: 8   QIPHHSSPHSPKNSPSGSLIKEIIAKLCFLFQVDAPVRSVPNLFTSSAKKLKCSL-SNEN 67
           Q  + SSPHSPKNSPS SLIK           VD PV SV NLFTSSAKKLK SL SNE+
Sbjct: 717 QRENSSSPHSPKNSPSASLIK-----------VDDPVTSVRNLFTSSAKKLKSSLVSNES 768

Query: 68  TKR 69
           TKR
Sbjct: 777 TKR 768

BLAST of Csor.00g046490 vs. ExPASy TrEMBL
Match: A0A6J1KEG3 (uncharacterized protein LOC111495084 OS=Cucurbita maxima OX=3661 GN=LOC111495084 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.17e-10
Identity = 41/63 (65.08%), Postives = 43/63 (68.25%), Query Frame = 0

Query: 8   QIPHHSSPHSPKNSPSGSLIKEIIAKLCFLFQVDAPVRSVPNLFTSSAKKLKCSL-SNEN 67
           Q  + SSPHSPKNSPS SLIK           VD PV SV NLFTSSAKKLK SL SNE+
Sbjct: 717 QRENSSSPHSPKNSPSASLIK-----------VDDPVTSVRNLFTSSAKKLKSSLVSNES 768

Query: 68  TKR 69
           TKR
Sbjct: 777 TKR 768

BLAST of Csor.00g046490 vs. ExPASy TrEMBL
Match: A0A6J1E8G0 (uncharacterized protein LOC111431594 OS=Cucurbita moschata OX=3662 GN=LOC111431594 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.17e-10
Identity = 41/63 (65.08%), Postives = 43/63 (68.25%), Query Frame = 0

Query: 8   QIPHHSSPHSPKNSPSGSLIKEIIAKLCFLFQVDAPVRSVPNLFTSSAKKLKCSL-SNEN 67
           Q  + SSPHSPKNSPS SLIK           VD PV SV NLFTSSAKKLK SL SNE+
Sbjct: 717 QRENSSSPHSPKNSPSASLIK-----------VDDPVTSVRNLFTSSAKKLKSSLVSNES 768

Query: 68  TKR 69
           TKR
Sbjct: 777 TKR 768

BLAST of Csor.00g046490 vs. ExPASy TrEMBL
Match: A0A6J1C6Z2 (uncharacterized protein LOC111008821 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111008821 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.82e-09
Identity = 38/57 (66.67%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 13  SSPHSPKNSPSGSLIKEIIAKLCFLFQVDAPVRSVPNLFTSSAKKLKCSL-SNENTK 68
           SSPHSPKNSP+ SLIK           VD PVRSV +LFTSSAKKLK SL SNEN+K
Sbjct: 709 SSPHSPKNSPAASLIK-----------VDDPVRSVRDLFTSSAKKLKSSLVSNENSK 754

BLAST of Csor.00g046490 vs. ExPASy TrEMBL
Match: A0A6J1CA31 (uncharacterized protein LOC111008821 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111008821 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.83e-09
Identity = 38/57 (66.67%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 13  SSPHSPKNSPSGSLIKEIIAKLCFLFQVDAPVRSVPNLFTSSAKKLKCSL-SNENTK 68
           SSPHSPKNSP+ SLIK           VD PVRSV +LFTSSAKKLK SL SNEN+K
Sbjct: 753 SSPHSPKNSPAASLIK-----------VDDPVRSVRDLFTSSAKKLKSSLVSNENSK 798

BLAST of Csor.00g046490 vs. ExPASy TrEMBL
Match: A0A6J1C7Z6 (uncharacterized protein LOC111008821 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008821 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.83e-09
Identity = 38/57 (66.67%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 13  SSPHSPKNSPSGSLIKEIIAKLCFLFQVDAPVRSVPNLFTSSAKKLKCSL-SNENTK 68
           SSPHSPKNSP+ SLIK           VD PVRSV +LFTSSAKKLK SL SNEN+K
Sbjct: 775 SSPHSPKNSPAASLIK-----------VDDPVRSVRDLFTSSAKKLKSSLVSNENSK 820

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6572924.12.44e-42100.00hypothetical protein SDJN03_26811, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023000722.16.54e-1065.08uncharacterized protein LOC111495084 [Cucurbita maxima][more]
XP_022924046.16.54e-1065.08uncharacterized protein LOC111431594 [Cucurbita moschata][more]
KAG6584377.16.54e-1065.08NIPA-like protein, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023519717.16.54e-1065.08uncharacterized protein LOC111783071 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
A0A6J1KEG33.17e-1065.08uncharacterized protein LOC111495084 OS=Cucurbita maxima OX=3661 GN=LOC111495084... [more]
A0A6J1E8G03.17e-1065.08uncharacterized protein LOC111431594 OS=Cucurbita moschata OX=3662 GN=LOC1114315... [more]
A0A6J1C6Z22.82e-0966.67uncharacterized protein LOC111008821 isoform X4 OS=Momordica charantia OX=3673 G... [more]
A0A6J1CA312.83e-0966.67uncharacterized protein LOC111008821 isoform X3 OS=Momordica charantia OX=3673 G... [more]
A0A6J1C7Z62.83e-0966.67uncharacterized protein LOC111008821 isoform X2 OS=Momordica charantia OX=3673 G... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g046490.m01Csor.00g046490.m01mRNA