Csor.00g046240 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g046240
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr18: 269364 .. 269573 (+)
RNA-Seq ExpressionCsor.00g046240
SyntenyCsor.00g046240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAGACTGATCGGAGAGATTGGCAGCGTCGATGGAAGTTTTGGCCTCTCCGGTGACATTTCTTGCCTCTTCTTGGCGGCTCTGTTTACACTCTGTATTATCTCCCTTATAACTTTCTCTTGCTCCGATGGCATCTCAAAGGAGAGGAATTCCACGGCGGACGTTGAGCTTTACGGCGGCGGTTGCGCCGCCGGGTGTGGTGCTTGA

mRNA sequence

ATGGCCAGACTGATCGGAGAGATTGGCAGCGTCGATGGAAGTTTTGGCCTCTCCGGTGACATTTCTTGCCTCTTCTTGGCGGCTCTGTTTACACTCTGTATTATCTCCCTTATAACTTTCTCTTGCTCCGATGGCATCTCAAAGGAGAGGAATTCCACGGCGGACGTTGAGCTTTACGGCGGCGGTTGCGCCGCCGGGTGTGGTGCTTGA

Coding sequence (CDS)

ATGGCCAGACTGATCGGAGAGATTGGCAGCGTCGATGGAAGTTTTGGCCTCTCCGGTGACATTTCTTGCCTCTTCTTGGCGGCTCTGTTTACACTCTGTATTATCTCCCTTATAACTTTCTCTTGCTCCGATGGCATCTCAAAGGAGAGGAATTCCACGGCGGACGTTGAGCTTTACGGCGGCGGTTGCGCCGCCGGGTGTGGTGCTTGA

Protein sequence

MARLIGEIGSVDGSFGLSGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELYGGGCAAGCGA
Homology
BLAST of Csor.00g046240 vs. NCBI nr
Match: KAG6572949.1 (hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139 bits (350), Expect = 2.01e-41
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0

Query: 1  MARLIGEIGSVDGSFGLSGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELYG 60
          MARLIGEIGSVDGSFGLSGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELYG
Sbjct: 1  MARLIGEIGSVDGSFGLSGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELYG 60

Query: 61 GGCAAGCGA 69
          GGCAAGCGA
Sbjct: 61 GGCAAGCGA 69

BLAST of Csor.00g046240 vs. NCBI nr
Match: KAG6584341.1 (hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106 bits (264), Expect = 3.09e-28
Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = 0

Query: 1  MARLIGEIGSVDGSFGLSGDISCLFLAALFTLCIISLITFSCSDGIS-KERNSTADVELY 60
          MARL+ E GS +GSFGL+GDI  LF AALFTLCIIS I FSCSDG+S K+RNSTADVELY
Sbjct: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60

Query: 61 GGGCAAGCGA 69
          G GCAAGCGA
Sbjct: 61 GAGCAAGCGA 70

BLAST of Csor.00g046240 vs. NCBI nr
Match: KAE8652552.1 (hypothetical protein Csa_013579 [Cucumis sativus])

HSP 1 Score: 100 bits (248), Expect = 1.87e-25
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 0

Query: 1  MARLIGEIGSVDGSFGLSG-DISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELY 60
          MARL+ EI S +GSFGL+G +   LF  ALFTLCIIS + FSCSDG+SK+RNST DVELY
Sbjct: 29 MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 88

Query: 61 GGGCAAGCGA 69
          GGGCAAGCGA
Sbjct: 89 GGGCAAGCGA 98

BLAST of Csor.00g046240 vs. NCBI nr
Match: PON38946.1 (hypothetical protein PanWU01x14_308610 [Parasponia andersonii])

HSP 1 Score: 82.8 bits (203), Expect = 6.35e-19
Identity = 43/71 (60.56%), Postives = 47/71 (66.20%), Query Frame = 0

Query: 1  MARLIGEIGSVDGSFGLS--GDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVEL 60
          M RL  E   VDG  G S  G     FL  L TLCI+S I FSC+DG+SKE+ S AD EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFFLGLLVTLCILSTIIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCAAGCGA 69
          YGGGCAAGCGA
Sbjct: 61 YGGGCAAGCGA 71

BLAST of Csor.00g046240 vs. NCBI nr
Match: POO01897.1 (hypothetical protein TorRG33x02_021890 [Trema orientale])

HSP 1 Score: 80.1 bits (196), Expect = 7.40e-18
Identity = 41/71 (57.75%), Postives = 46/71 (64.79%), Query Frame = 0

Query: 1  MARLIGEIGSVDGSFGLS--GDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVEL 60
          M RL  E   VDG  G S  G      L  L TLCI+S + FSC+DG+SKE+ S AD EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFLLGLLVTLCILSTVIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCAAGCGA 69
          YGGGCAAGCGA
Sbjct: 61 YGGGCAAGCGA 71

BLAST of Csor.00g046240 vs. ExPASy TrEMBL
Match: A0A0A0LQU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1)

HSP 1 Score: 100 bits (248), Expect = 4.12e-26
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 0

Query: 1  MARLIGEIGSVDGSFGLSG-DISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELY 60
          MARL+ EI S +GSFGL+G +   LF  ALFTLCIIS + FSCSDG+SK+RNST DVELY
Sbjct: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60

Query: 61 GGGCAAGCGA 69
          GGGCAAGCGA
Sbjct: 61 GGGCAAGCGA 70

BLAST of Csor.00g046240 vs. ExPASy TrEMBL
Match: A0A2P5AQX4 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.07e-19
Identity = 43/71 (60.56%), Postives = 47/71 (66.20%), Query Frame = 0

Query: 1  MARLIGEIGSVDGSFGLS--GDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVEL 60
          M RL  E   VDG  G S  G     FL  L TLCI+S I FSC+DG+SKE+ S AD EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFFLGLLVTLCILSTIIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCAAGCGA 69
          YGGGCAAGCGA
Sbjct: 61 YGGGCAAGCGA 71

BLAST of Csor.00g046240 vs. ExPASy TrEMBL
Match: A0A803R005 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.73e-18
Identity = 41/70 (58.57%), Postives = 47/70 (67.14%), Query Frame = 0

Query: 1  MARLIGEIGSVDGSFGL-SGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELY 60
          M RL  E+ +VDG  G  SG      L  L TLCI+S I FSC+DG+SKE+ S  D ELY
Sbjct: 1  MVRLWREVANVDGGVGTGSGAFLIFLLGFLVTLCILSTIIFSCADGVSKEKTSQGDTELY 60

Query: 61 GGGCAAGCGA 69
          GGGCAAGCGA
Sbjct: 61 GGGCAAGCGA 70

BLAST of Csor.00g046240 vs. ExPASy TrEMBL
Match: A0A803R004 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.73e-18
Identity = 41/70 (58.57%), Postives = 47/70 (67.14%), Query Frame = 0

Query: 1  MARLIGEIGSVDGSFGL-SGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELY 60
          M RL  E+ +VDG  G  SG      L  L TLCI+S I FSC+DG+SKE+ S  D ELY
Sbjct: 1  MVRLWREVANVDGGVGTGSGAFLIFLLGFLVTLCILSTIIFSCADGVSKEKTSQGDTELY 60

Query: 61 GGGCAAGCGA 69
          GGGCAAGCGA
Sbjct: 61 GGGCAAGCGA 70

BLAST of Csor.00g046240 vs. ExPASy TrEMBL
Match: A0A2P5FVW4 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_021890 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.58e-18
Identity = 41/71 (57.75%), Postives = 46/71 (64.79%), Query Frame = 0

Query: 1  MARLIGEIGSVDGSFGLS--GDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVEL 60
          M RL  E   VDG  G S  G      L  L TLCI+S + FSC+DG+SKE+ S AD EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFLLGLLVTLCILSTVIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCAAGCGA 69
          YGGGCAAGCGA
Sbjct: 61 YGGGCAAGCGA 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6572949.12.01e-41100.00hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6584341.13.09e-2878.57hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8652552.11.87e-2572.86hypothetical protein Csa_013579 [Cucumis sativus][more]
PON38946.16.35e-1960.56hypothetical protein PanWU01x14_308610 [Parasponia andersonii][more]
POO01897.17.40e-1857.75hypothetical protein TorRG33x02_021890 [Trema orientale][more]
Match NameE-valueIdentityDescription
A0A0A0LQU74.12e-2672.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1[more]
A0A2P5AQX43.07e-1960.56Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE... [more]
A0A803R0051.73e-1858.57Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803R0041.73e-1858.57Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A2P5FVW43.58e-1857.75Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_021890 PE=4 SV... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37199TRANSMEMBRANE PROTEINcoord: 1..69
NoneNo IPR availablePANTHERPTHR37199:SF2MEMBRANE LIPOPROTEIN-RELATEDcoord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g046240.m01Csor.00g046240.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane