Csor.00g046240 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g046240
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr18: 269364 .. 269573 (+)
RNA-Seq Expression	Csor.00g046240
Synteny	Csor.00g046240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGACTGATCGGAGAGATTGGCAGCGTCGATGGAAGTTTTGGCCTCTCCGGTGACATTTCTTGCCTCTTCTTGGCGGCTCTGTTTACACTCTGTATTATCTCCCTTATAACTTTCTCTTGCTCCGATGGCATCTCAAAGGAGAGGAATTCCACGGCGGACGTTGAGCTTTACGGCGGCGGTTGCGCCGCCGGGTGTGGTGCTTGA

mRNA sequence

ATGGCCAGACTGATCGGAGAGATTGGCAGCGTCGATGGAAGTTTTGGCCTCTCCGGTGACATTTCTTGCCTCTTCTTGGCGGCTCTGTTTACACTCTGTATTATCTCCCTTATAACTTTCTCTTGCTCCGATGGCATCTCAAAGGAGAGGAATTCCACGGCGGACGTTGAGCTTTACGGCGGCGGTTGCGCCGCCGGGTGTGGTGCTTGA

Coding sequence (CDS)

ATGGCCAGACTGATCGGAGAGATTGGCAGCGTCGATGGAAGTTTTGGCCTCTCCGGTGACATTTCTTGCCTCTTCTTGGCGGCTCTGTTTACACTCTGTATTATCTCCCTTATAACTTTCTCTTGCTCCGATGGCATCTCAAAGGAGAGGAATTCCACGGCGGACGTTGAGCTTTACGGCGGCGGTTGCGCCGCCGGGTGTGGTGCTTGA

Protein sequence

MARLIGEIGSVDGSFGLSGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELYGGGCAAGCGA

Homology

[Close]

BLAST of Csor.00g046240 vs. NCBI nr
Match: KAG6572949.1 (hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139 bits (350), Expect = 2.01e-41
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MARLIGEIGSVDGSFGLSGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELYG 60
          MARLIGEIGSVDGSFGLSGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELYG
Sbjct: 1  MARLIGEIGSVDGSFGLSGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELYG 60

Query: 61 GGCAAGCGA 69
          GGCAAGCGA
Sbjct: 61 GGCAAGCGA 69

[Close]

BLAST of Csor.00g046240 vs. NCBI nr
Match: KAG6584341.1 (hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106 bits (264), Expect = 3.09e-28
Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 1  MARLIGEIGSVDGSFGLSGDISCLFLAALFTLCIISLITFSCSDGIS-KERNSTADVELY 60
          MARL+ E GS +GSFGL+GDI  LF AALFTLCIIS I FSCSDG+S K+RNSTADVELY
Sbjct: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60

Query: 61 GGGCAAGCGA 69
          G GCAAGCGA
Sbjct: 61 GAGCAAGCGA 70

[Close]

BLAST of Csor.00g046240 vs. NCBI nr
Match: KAE8652552.1 (hypothetical protein Csa_013579 [Cucumis sativus])

HSP 1 Score: 100 bits (248), Expect = 1.87e-25
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 1  MARLIGEIGSVDGSFGLSG-DISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELY 60
          MARL+ EI S +GSFGL+G +   LF  ALFTLCIIS + FSCSDG+SK+RNST DVELY
Sbjct: 29 MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 88

Query: 61 GGGCAAGCGA 69
          GGGCAAGCGA
Sbjct: 89 GGGCAAGCGA 98

[Close]

BLAST of Csor.00g046240 vs. NCBI nr
Match: PON38946.1 (hypothetical protein PanWU01x14_308610 [Parasponia andersonii])

HSP 1 Score: 82.8 bits (203), Expect = 6.35e-19
Identity = 43/71 (60.56%), Postives = 47/71 (66.20%), Query Frame = 0


Query: 1  MARLIGEIGSVDGSFGLS--GDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVEL 60
          M RL  E   VDG  G S  G     FL  L TLCI+S I FSC+DG+SKE+ S AD EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFFLGLLVTLCILSTIIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCAAGCGA 69
          YGGGCAAGCGA
Sbjct: 61 YGGGCAAGCGA 71

[Close]

BLAST of Csor.00g046240 vs. NCBI nr
Match: POO01897.1 (hypothetical protein TorRG33x02_021890 [Trema orientale])

HSP 1 Score: 80.1 bits (196), Expect = 7.40e-18
Identity = 41/71 (57.75%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 1  MARLIGEIGSVDGSFGLS--GDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVEL 60
          M RL  E   VDG  G S  G      L  L TLCI+S + FSC+DG+SKE+ S AD EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFLLGLLVTLCILSTVIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCAAGCGA 69
          YGGGCAAGCGA
Sbjct: 61 YGGGCAAGCGA 71

[Close]

BLAST of Csor.00g046240 vs. ExPASy TrEMBL
Match: A0A0A0LQU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1)

HSP 1 Score: 100 bits (248), Expect = 4.12e-26
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 1  MARLIGEIGSVDGSFGLSG-DISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELY 60
          MARL+ EI S +GSFGL+G +   LF  ALFTLCIIS + FSCSDG+SK+RNST DVELY
Sbjct: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60

Query: 61 GGGCAAGCGA 69
          GGGCAAGCGA
Sbjct: 61 GGGCAAGCGA 70

[Close]

BLAST of Csor.00g046240 vs. ExPASy TrEMBL
Match: A0A2P5AQX4 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.07e-19
Identity = 43/71 (60.56%), Postives = 47/71 (66.20%), Query Frame = 0


Query: 1  MARLIGEIGSVDGSFGLS--GDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVEL 60
          M RL  E   VDG  G S  G     FL  L TLCI+S I FSC+DG+SKE+ S AD EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFFLGLLVTLCILSTIIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCAAGCGA 69
          YGGGCAAGCGA
Sbjct: 61 YGGGCAAGCGA 71

[Close]

BLAST of Csor.00g046240 vs. ExPASy TrEMBL
Match: A0A803R005 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.73e-18
Identity = 41/70 (58.57%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 1  MARLIGEIGSVDGSFGL-SGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELY 60
          M RL  E+ +VDG  G  SG      L  L TLCI+S I FSC+DG+SKE+ S  D ELY
Sbjct: 1  MVRLWREVANVDGGVGTGSGAFLIFLLGFLVTLCILSTIIFSCADGVSKEKTSQGDTELY 60

Query: 61 GGGCAAGCGA 69
          GGGCAAGCGA
Sbjct: 61 GGGCAAGCGA 70

[Close]

BLAST of Csor.00g046240 vs. ExPASy TrEMBL
Match: A0A803R004 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.73e-18
Identity = 41/70 (58.57%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 1  MARLIGEIGSVDGSFGL-SGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELY 60
          M RL  E+ +VDG  G  SG      L  L TLCI+S I FSC+DG+SKE+ S  D ELY
Sbjct: 1  MVRLWREVANVDGGVGTGSGAFLIFLLGFLVTLCILSTIIFSCADGVSKEKTSQGDTELY 60

Query: 61 GGGCAAGCGA 69
          GGGCAAGCGA
Sbjct: 61 GGGCAAGCGA 70

[Close]

BLAST of Csor.00g046240 vs. ExPASy TrEMBL
Match: A0A2P5FVW4 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_021890 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.58e-18
Identity = 41/71 (57.75%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 1  MARLIGEIGSVDGSFGLS--GDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVEL 60
          M RL  E   VDG  G S  G      L  L TLCI+S + FSC+DG+SKE+ S AD EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFLLGLLVTLCILSTVIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCAAGCGA 69
          YGGGCAAGCGA
Sbjct: 61 YGGGCAAGCGA 71

The following BLAST results are available for this feature:

BLAST of Csor.00g046240 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g046240 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572949.1	2.01e-41	100.00	hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6584341.1	3.09e-28	78.57	hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8652552.1	1.87e-25	72.86	hypothetical protein Csa_013579 [Cucumis sativus]	[more]
PON38946.1	6.35e-19	60.56	hypothetical protein PanWU01x14_308610 [Parasponia andersonii]	[more]
POO01897.1	7.40e-18	57.75	hypothetical protein TorRG33x02_021890 [Trema orientale]	[more]

BLAST of Csor.00g046240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQU7	4.12e-26	72.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1	[more]
A0A2P5AQX4	3.07e-19	60.56	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE...	[more]
A0A803R005	1.73e-18	58.57	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803R004	1.73e-18	58.57	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A2P5FVW4	3.58e-18	57.75	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_021890 PE=4 SV...	[more]

BLAST of Csor.00g046240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37199	TRANSMEMBRANE PROTEIN	coord: 1..69
None	No IPR available	PANTHER	PTHR37199:SF2	MEMBRANE LIPOPROTEIN-RELATED	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g046240.m01	Csor.00g046240.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane