Csor.00g045270 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g045270
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr18: 860319 .. 862787 (-)
RNA-Seq ExpressionCsor.00g045270
SyntenyCsor.00g045270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGAAGAAGGTTGCATTGTACCTAACCTACCATTTGATGCAGAAAACGAAGGAAGCCATTAAAAAACTAAGGTATTCTTTGGCTGGTGAAGATGGGTCTGCAGATTTCCAGTGTTTATGCGCCACAGAACAAGAGGAAGAGGGTTGGGATTTGATTGGCTTTGTTTTAGTGTGAAAGCCAAGGTGGGTAAGGCTGAGATTGGCCATCAAAGTGGCAGTTGAGCCCTACAGTGATTGAAGAGACTAGAAGAATTTCATACATTTCAACAAAACAACTCCCAAATTTGAAGGCCCATTTTCTACCAAACTATCACAAGGTACACTTTCTTTCACCTGCTCTCAACAAAAACCTGATATTTTGGGAGTCTTTTTCTTTACCCTGTTTCCTTGAGTGTCAAAGATTTTGGTTAGGAAATTGCTGAAAAAGGTATGGATGTGTGAAGATAATGTGGTGTGTGTGAGTTTAGAGGAGGTCCACCATTAATATAGCAACTCGATTACCCACAGGAGCCTGTTTTCTCTTTATTTATCAGCCTTCAATGATGAGTTTTCCCTGTCTAATAGCCTGCTAACCACAGCATTCTTTCCACTAATGGTGGCGACATCATTAACTTAGAAGATGAATCTAAAGTTACTTTTATTTCCATGTGATATGAGACAAAGTGAAAAACTAACAAAGACATGGTCCTAAAGGGATAATTAGAAAATGAATAGGTTCAAAGAGGAGAGTGACCAGACCAGAGAAAGAGAAATGTGGGCAGAACAGAGATCTGAAAGTATCGTATAGAACAGAAGAATTTTGCTTGATTTGTCACTAAAACTCAACCAATATGACAAAGGAATAAAATGAAGGGCTTAGAGAAATGGGTGATATGTGGGGTCTTTGCTTCCTTTTCCTTGCACGCATGGGCTTCAAAATATCCTCTTTGATCATGACCATTCATACACCCATCACCATGCGCCTTTTGTAACATAACACCCTTGTCTCTAAAAAAGATATCAACCGGTGGAGAATATTTTGGATATATAAACAAAAAACATCTCGATAGTAAACCGCCCTCGGGTTGACTTAGTAGTTAACGGGGACCATGTAAATAACCGAGAGCTTAAAGGGAATGGGTTCAAGCCATAGTCACCTCGGGTTGACTTAGTAGTTAACGGGGACCATGTAAATAACAGAGAGCTTAAAGGGAATGAGTTCAAGCCATAGTCACTCATAGATTTACTAATGTAAAATCTTTTGATAGAATTCTAAAGTGAAATTATGTGTACTTAAAGTTAAAGCGAATGAATCATGTTATCGAAGAAAAGACCCGTTCGAGAAAATATCGACATGTATATGTATACTAGAGAGAACTTAGTTGAAAAGGGTTTCATTTGTTTCTTGGGATTCTTAAATATGTTCGCCCCACATTTGTCTGAACTTTTGGCTTTTATGTGGACTTGGTGGTAGAAATCTCGTGAGAATTAAGAGGTCAAACTTCCTTATTTCAAAGAAATAATTATTTCTTTTGTGCTTCTTTGGAGAAGAAGAGATCATTGTGCTGTAGAAATATAATGATTTGGACGTGACCTTGATGCCTTGCAATCTGGTCTTTTTGGTGCTCATGCCTTTTCTCTTTTTTCGAAACTTTTTGGTGTTCATGCTTCTTTTTCTAATGAATATGATCTATATTAAATATTGTATCTTGGTGTTCATGCTGATTTGTAATCAAATTTGATTTCACATCGGTTGGGGAGGAGAACGAAATATTCTTTATAAAGATGTGGAAACCTTTCCCTACTAGATGTGTTTTAAAAACTTTTAGGGGAGGCCCGAATGGAAAAATCCAAAGAAAACAATATCTGTTAGCGATGGGGTTGGGCCATTACAAATGGTGTCAGAGCCAGACACTGGGCGACGTGTTAGCGAGGAGGTTGAGCTTCAAAGGGGGTGGACATGAGGCGGTGTGTCAACAAAGACGCTTGGCTCCAAAGGGGGTGGTTTGGGAGGTCCTACATCGATTAGAGAAGGGAATGAGTACAGCGAGGATGTTGGGTCCCAAAGGGGGATGGATTGTAAGATCCCACATCGGTTAGGGAGGAGAATGAAGCATTTTTTTCAAGGGTGTGGAAAACTCTCCTTGAGGGAAAGCTCAAAGAACATAATATCTGTTCGCAAGCTTATTACACAAACTATTACGGATAAATTTAAATATTTGATGTAAACTTTTGCCAAAATTTCATATTAAACTGATTTCTATATTTCTCTCTCACATGCTATCTCCCTCTCTATAAGTTACCTTAAGAAATAAACGTAACGCTCTTCCAAGATGTACCATGGTAACGCTTGTGCTTTTTCGTGTCACAGGGGACAATGGAGCGTAATAGGATATTTCGAGTGGTTCGGGGAGCACAAAGAGGATGGCTAGGCGGAAAAGTTTATGACCATTCTCTTGAGTATAGAAATCAATCATTTTTCAGGTAG

mRNA sequence

ATGCTGAAGAAGGTTGCATTGTACCTAACCTACCATTTGATGCAGAAAACGAAGGAAGCCATTAAAAAACTAAGGTATTCTTTGGCTGGTGAAGATGGGTCTGCAGATTTCCAGTGTTTATGCGCCACAGAACAAGAGGAAGAGGTGATTGAAGAGACTAGAAGAATTTCATACATTTCAACAAAACAACTCCCAAATTTGAAGGCCCATTTTCTACCAAACTATCACAAGGGGACAATGGAGCGTAATAGGATATTTCGAGTGGTTCGGGGAGCACAAAGAGGATGGCTAGGCGGAAAAGTTTATGACCATTCTCTTGAGTATAGAAATCAATCATTTTTCAGGTAG

Coding sequence (CDS)

ATGCTGAAGAAGGTTGCATTGTACCTAACCTACCATTTGATGCAGAAAACGAAGGAAGCCATTAAAAAACTAAGGTATTCTTTGGCTGGTGAAGATGGGTCTGCAGATTTCCAGTGTTTATGCGCCACAGAACAAGAGGAAGAGGTGATTGAAGAGACTAGAAGAATTTCATACATTTCAACAAAACAACTCCCAAATTTGAAGGCCCATTTTCTACCAAACTATCACAAGGGGACAATGGAGCGTAATAGGATATTTCGAGTGGTTCGGGGAGCACAAAGAGGATGGCTAGGCGGAAAAGTTTATGACCATTCTCTTGAGTATAGAAATCAATCATTTTTCAGGTAG

Protein sequence

MLKKVALYLTYHLMQKTKEAIKKLRYSLAGEDGSADFQCLCATEQEEEVIEETRRISYISTKQLPNLKAHFLPNYHKGTMERNRIFRVVRGAQRGWLGGKVYDHSLEYRNQSFFR
Homology
[Close]
BLAST of Csor.00g045270 vs. NCBI nr
Match: KAG6573046.1 (hypothetical protein SDJN03_26933, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236 bits (601), Expect = 2.80e-78
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MLKKVALYLTYHLMQKTKEAIKKLRYSLAGEDGSADFQCLCATEQEEEVIEETRRISYIS 60
           MLKKVALYLTYHLMQKTKEAIKKLRYSLAGEDGSADFQCLCATEQEEEVIEETRRISYIS
Sbjct: 1   MLKKVALYLTYHLMQKTKEAIKKLRYSLAGEDGSADFQCLCATEQEEEVIEETRRISYIS 60

Query: 61  TKQLPNLKAHFLPNYHKGTMERNRIFRVVRGAQRGWLGGKVYDHSLEYRNQSFFR 115
           TKQLPNLKAHFLPNYHKGTMERNRIFRVVRGAQRGWLGGKVYDHSLEYRNQSFFR
Sbjct: 61  TKQLPNLKAHFLPNYHKGTMERNRIFRVVRGAQRGWLGGKVYDHSLEYRNQSFFR 115

[Close]
BLAST of Csor.00g045270 vs. NCBI nr
Match: KAG7012234.1 (hypothetical protein SDJN02_24986, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.1 bits (131), Expect = 2.91e-06
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 78  GTMERNRIFRVVRGAQRGWLGGKVYDHSLEY 108
           GTMERNRIFRVVRGAQRGWLGGK     L++
Sbjct: 69  GTMERNRIFRVVRGAQRGWLGGKQGRQPLQH 99

The following BLAST results are available for this feature:
BLAST of Csor.00g045270 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g045270 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6573046.12.80e-78100.00hypothetical protein SDJN03_26933, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7012234.12.91e-0677.42hypothetical protein SDJN02_24986, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Csor.00g045270 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g045270 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g045270.m01Csor.00g045270.m01mRNA