Csor.00g044890 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g044890
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr18: 1065325 .. 1065570 (-)
RNA-Seq ExpressionCsor.00g044890
SyntenyCsor.00g044890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCATTCCATTCCTCAATTCATGAAGAACAAACCAGAGATTGAAGACGGCGATCGTTACCTCGAAATCCCCAAGGCGGTGGCGCGGGCCTGGCAGAGCCACACCGGCAGTTCAAAACCGGCAACTGAATTCGCCGCCCATCGCCGGAATTGCAGAAGCAATCCATCTCGGTTCAAGAATGAGGCGGTGCGGAAGCGGCGACCTGCGATGGAACTTCGCGCAGTCGCTGTGGGACTCGTATGA

mRNA sequence

ATGGCCCATTCCATTCCTCAATTCATGAAGAACAAACCAGAGATTGAAGACGGCGATCGTTACCTCGAAATCCCCAAGGCGGTGGCGCGGGCCTGGCAGAGCCACACCGGCAGTTCAAAACCGGCAACTGAATTCGCCGCCCATCGCCGGAATTGCAGAAGCAATCCATCTCGGTTCAAGAATGAGGCGGTGCGGAAGCGGCGACCTGCGATGGAACTTCGCGCAGTCGCTGTGGGACTCGTATGA

Coding sequence (CDS)

ATGGCCCATTCCATTCCTCAATTCATGAAGAACAAACCAGAGATTGAAGACGGCGATCGTTACCTCGAAATCCCCAAGGCGGTGGCGCGGGCCTGGCAGAGCCACACCGGCAGTTCAAAACCGGCAACTGAATTCGCCGCCCATCGCCGGAATTGCAGAAGCAATCCATCTCGGTTCAAGAATGAGGCGGTGCGGAAGCGGCGACCTGCGATGGAACTTCGCGCAGTCGCTGTGGGACTCGTATGA

Protein sequence

MAHSIPQFMKNKPEIEDGDRYLEIPKAVARAWQSHTGSSKPATEFAAHRRNCRSNPSRFKNEAVRKRRPAMELRAVAVGLV
Homology
BLAST of Csor.00g044890 vs. NCBI nr
Match: KAG6573084.1 (hypothetical protein SDJN03_26971, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012270.1 hypothetical protein SDJN02_25022, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166 bits (419), Expect = 1.39e-51
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0

Query: 1  MAHSIPQFMKNKPEIEDGDRYLEIPKAVARAWQSHTGSSKPATEFAAHRRNCRSNPSRFK 60
          MAHSIPQFMKNKPEIEDGDRYLEIPKAVARAWQSHTGSSKPATEFAAHRRNCRSNPSRFK
Sbjct: 1  MAHSIPQFMKNKPEIEDGDRYLEIPKAVARAWQSHTGSSKPATEFAAHRRNCRSNPSRFK 60

Query: 61 NEAVRKRRPAMELRAVAVGLV 81
          NEAVRKRRPAMELRAVAVGLV
Sbjct: 61 NEAVRKRRPAMELRAVAVGLV 81

BLAST of Csor.00g044890 vs. NCBI nr
Match: KAG6584197.1 (hypothetical protein SDJN03_20129, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019794.1 hypothetical protein SDJN02_18757, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 96.3 bits (238), Expect = 2.20e-23
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 0

Query: 9  MKNKPEIEDGDRYLEIPKAVARAWQSHTGSSKPATEFAAHRRNCRSNPSRFKNEAVRKR 67
          MKNKP +ED D +LEI KAVA+AWQSHTG+SKPA+EF AHRRNCR+NPSRFK EA+R R
Sbjct: 1  MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSR 59

BLAST of Csor.00g044890 vs. NCBI nr
Match: XP_022923731.1 (uncharacterized protein LOC111431350 [Cucurbita moschata])

HSP 1 Score: 96.3 bits (238), Expect = 4.09e-23
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 0

Query: 9  MKNKPEIEDGDRYLEIPKAVARAWQSHTGSSKPATEFAAHRRNCRSNPSRFKNEAVRKR 67
          MKNKP +ED D +LEI KAVA+AWQSHTG+SKPA+EF AHRRNCR+NPSRFK EA+R R
Sbjct: 24 MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSR 82

BLAST of Csor.00g044890 vs. NCBI nr
Match: XP_023519325.1 (uncharacterized protein LOC111782756 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 96.3 bits (238), Expect = 4.09e-23
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 0

Query: 9  MKNKPEIEDGDRYLEIPKAVARAWQSHTGSSKPATEFAAHRRNCRSNPSRFKNEAVRKR 67
          MKNKP +ED D +LEI KAVA+AWQSHTG+SKPA+EF AHRRNCR+NPSRFK EA+R R
Sbjct: 24 MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSR 82

BLAST of Csor.00g044890 vs. NCBI nr
Match: XP_023001654.1 (uncharacterized protein LOC111495727 [Cucurbita maxima])

HSP 1 Score: 93.2 bits (230), Expect = 3.60e-22
Identity = 44/59 (74.58%), Postives = 51/59 (86.44%), Query Frame = 0

Query: 9  MKNKPEIEDGDRYLEIPKAVARAWQSHTGSSKPATEFAAHRRNCRSNPSRFKNEAVRKR 67
          MKNK  +ED D +LEI KAVA+AWQSHTG+SKPA+EF AHRRNCR+NPSRFK EA+R R
Sbjct: 1  MKNKAVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSR 59

BLAST of Csor.00g044890 vs. ExPASy TrEMBL
Match: A0A6J1E7J5 (uncharacterized protein LOC111431350 OS=Cucurbita moschata OX=3662 GN=LOC111431350 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.98e-23
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 0

Query: 9  MKNKPEIEDGDRYLEIPKAVARAWQSHTGSSKPATEFAAHRRNCRSNPSRFKNEAVRKR 67
          MKNKP +ED D +LEI KAVA+AWQSHTG+SKPA+EF AHRRNCR+NPSRFK EA+R R
Sbjct: 24 MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSR 82

BLAST of Csor.00g044890 vs. ExPASy TrEMBL
Match: A0A6J1KNC1 (uncharacterized protein LOC111495727 OS=Cucurbita maxima OX=3661 GN=LOC111495727 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.74e-22
Identity = 44/59 (74.58%), Postives = 51/59 (86.44%), Query Frame = 0

Query: 9  MKNKPEIEDGDRYLEIPKAVARAWQSHTGSSKPATEFAAHRRNCRSNPSRFKNEAVRKR 67
          MKNK  +ED D +LEI KAVA+AWQSHTG+SKPA+EF AHRRNCR+NPSRFK EA+R R
Sbjct: 1  MKNKAVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSR 59

BLAST of Csor.00g044890 vs. ExPASy TrEMBL
Match: A0A6J1C5Z6 (uncharacterized protein LOC111008716 OS=Momordica charantia OX=3673 GN=LOC111008716 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.05e-22
Identity = 45/62 (72.58%), Postives = 49/62 (79.03%), Query Frame = 0

Query: 9  MKNKPEIEDGDRYLEIPKAVARAWQSHTGSSKPATEFAAHRRNCRSNPSRFKNEAVRKRR 68
          MK KPE+ED  R+LEI KAVA+AW SHTGSSKPA EF AHRRNCR  PSRFK EA+R R 
Sbjct: 1  MKKKPEVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRS 60

Query: 69 PA 70
           A
Sbjct: 61 SA 62

BLAST of Csor.00g044890 vs. ExPASy TrEMBL
Match: A0A0A0LTM3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046880 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.01e-17
Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 0

Query: 9  MKNKPEIE---DGDRYLEIPKAVARAWQSHTGSSKPATEFAAHRRNCRSNPSRFKNEAVR 67
          MK KP++    D DR+LEI KAVA+AW SHTG+SKPA+EF AHRRN R  PSRFK EA+R
Sbjct: 1  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60

BLAST of Csor.00g044890 vs. ExPASy TrEMBL
Match: A0A5A7UNW1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003950 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.02e-17
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 0

Query: 9  MKNKPEIE---DGDRYLEIPKAVARAWQSHTGSSKPATEFAAHRRNCRSNPSRFKNEAVR 67
          MK KP++    D DR+LEI KAVA+AW +HTG+SKPA+EF AHRRN R  PSRFK EA+R
Sbjct: 1  MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6573084.11.39e-51100.00hypothetical protein SDJN03_26971, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6584197.12.20e-2376.27hypothetical protein SDJN03_20129, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022923731.14.09e-2376.27uncharacterized protein LOC111431350 [Cucurbita moschata][more]
XP_023519325.14.09e-2376.27uncharacterized protein LOC111782756 [Cucurbita pepo subsp. pepo][more]
XP_023001654.13.60e-2274.58uncharacterized protein LOC111495727 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
A0A6J1E7J51.98e-2376.27uncharacterized protein LOC111431350 OS=Cucurbita moschata OX=3662 GN=LOC1114313... [more]
A0A6J1KNC11.74e-2274.58uncharacterized protein LOC111495727 OS=Cucurbita maxima OX=3661 GN=LOC111495727... [more]
A0A6J1C5Z62.05e-2272.58uncharacterized protein LOC111008716 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
A0A0A0LTM31.01e-1766.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046880 PE=4 SV=1[more]
A0A5A7UNW12.02e-1764.52Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34665FAMILY NOT NAMEDcoord: 9..67
NoneNo IPR availablePANTHERPTHR34665:SF1OS02G0595200 PROTEINcoord: 9..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g044890.m01Csor.00g044890.m01mRNA