Csor.00g044150 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTGGTTGCCTTAGTTTCTTTTGGATGTAAAAACCTTCTGAGCAAGGGCCTGAAGATTATTGTTGCTGCAGCAGTCGATACGGGAGTGACCGAAGCAAGGGCACGGATATTTGGTCATATACTGAATCCAATAGGTCTACGAATGCTATCTTCATTGGTATGAAGCCTTTTTGGGAACCAAAAGCAAAGCTACGAGAAATTATACTCAAAGTGGACAACATCATACCATTGTGGAGAGTCGTGGTTCTTAACACCTATGCCATCATCACGAAGCCGAAGAGTGTGCTGACTGACAACAAGCTCGTCAAAATATCCAAGCGAGAGAAGAAAGCAATAAAGTCACTTGTTATGGGAATCAAGAGTGTAGCCTTGATGATGGGAATTCTAGTCTTTGGATGGACGAGCAAGCTAAGGAGGAATCATGTGTTCTCGAGCAATATGAGTCGTATACCGAGCTTGCCCGAGAGATCCCATTCAGCGCCCATGTTGCTCTCTATGGAAATGGACAAATGATAATGGATAAGAACTAG ATGTTGGTTGCCTTAGTTTCTTTTGGATGTAAAAACCTTCTGAGCAAGGGCCTGAAGATTATTGTTGCTGCAGCAGTCGATACGGGAGTGACCGAAGCAAGGGCACGGATATTTGGTCATATACTGAATCCAATAGAGTGTAGCCTTGATGATGGGAATTCTAGTCTTTGGATGGACGAGCAAGCTAAGGAGGAATCATGTGTTCTCGAGCAATATGAGTCGTATACCGAGCTTGCCCGAGAGATCCCATTCAGCGCCCATGTTGCTCTCTATGGAAATGGACAAATGATAATGGATAAGAACTAG ATGTTGGTTGCCTTAGTTTCTTTTGGATGTAAAAACCTTCTGAGCAAGGGCCTGAAGATTATTGTTGCTGCAGCAGTCGATACGGGAGTGACCGAAGCAAGGGCACGGATATTTGGTCATATACTGAATCCAATAGAGTGTAGCCTTGATGATGGGAATTCTAGTCTTTGGATGGACGAGCAAGCTAAGGAGGAATCATGTGTTCTCGAGCAATATGAGTCGTATACCGAGCTTGCCCGAGAGATCCCATTCAGCGCCCATGTTGCTCTCTATGGAAATGGACAAATGATAATGGATAAGAACTAG MLVALVSFGCKNLLSKGLKIIVAAAVDTGVTEARARIFGHILNPIECSLDDGNSSLWMDEQAKEESCVLEQYESYTELAREIPFSAHVALYGNGQMIMDKN Homology
BLAST of Csor.00g044150 vs. NCBI nr
Match: KAG6573158.1 (hypothetical protein SDJN03_27045, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 198 bits (504), Expect = 6.30e-64 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0
BLAST of Csor.00g044150 vs. NCBI nr
Match: XP_004293878.1 (PREDICTED: uncharacterized protein LOC101298294 [Fragaria vesca subsp. vesca]) HSP 1 Score: 48.9 bits (115), Expect = 8.08e-05 Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 0
BLAST of Csor.00g044150 vs. NCBI nr
Match: XP_038876969.1 (28S ribosomal protein S33, mitochondrial [Benincasa hispida] >XP_038876970.1 28S ribosomal protein S33, mitochondrial [Benincasa hispida]) HSP 1 Score: 48.9 bits (115), Expect = 8.25e-05 Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 0
BLAST of Csor.00g044150 vs. NCBI nr
Match: XP_009340264.1 (PREDICTED: 28S ribosomal protein S33, mitochondrial [Pyrus x bretschneideri] >XP_009340265.1 PREDICTED: 28S ribosomal protein S33, mitochondrial [Pyrus x bretschneideri] >KAB2601729.1 28S ribosomal protein S33 [Pyrus ussuriensis x Pyrus communis] >KAB2634378.1 28S ribosomal protein S33 [Pyrus ussuriensis x Pyrus communis]) HSP 1 Score: 47.8 bits (112), Expect = 2.36e-04 Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 0
BLAST of Csor.00g044150 vs. NCBI nr
Match: XP_008383262.1 (28S ribosomal protein S33, mitochondrial [Malus domestica] >XP_008383263.1 28S ribosomal protein S33, mitochondrial [Malus domestica] >RXH86759.1 hypothetical protein DVH24_022032 [Malus domestica]) HSP 1 Score: 47.8 bits (112), Expect = 2.36e-04 Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 0
BLAST of Csor.00g044150 vs. ExPASy TrEMBL
Match: A0A5N5FF40 (28S ribosomal protein S33 OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_002734 PE=3 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 1.14e-04 Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 0
BLAST of Csor.00g044150 vs. ExPASy TrEMBL
Match: A0A498ITZ3 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_022032 PE=3 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 1.14e-04 Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 0
BLAST of Csor.00g044150 vs. ExPASy TrEMBL
Match: A0A2P6RGD2 (Putative ribosomal protein S27/S33 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0492041 PE=3 SV=1) HSP 1 Score: 47.4 bits (111), Expect = 1.54e-04 Identity = 23/30 (76.67%), Postives = 26/30 (86.67%), Query Frame = 0
BLAST of Csor.00g044150 vs. ExPASy TrEMBL
Match: A0A2P6Q7J6 (Putative ribosomal protein S27/S33 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0021361 PE=3 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 3.06e-04 Identity = 22/27 (81.48%), Postives = 25/27 (92.59%), Query Frame = 0
BLAST of Csor.00g044150 vs. ExPASy TrEMBL
Match: A0A498JU21 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_011000 PE=3 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 3.18e-04 Identity = 21/28 (75.00%), Postives = 26/28 (92.86%), Query Frame = 0
BLAST of Csor.00g044150 vs. TAIR 10
Match: AT5G44710.1 (CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219); Has 101 Blast hits to 101 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). ) HSP 1 Score: 43.9 bits (102), Expect = 8.9e-05 Identity = 20/32 (62.50%), Postives = 26/32 (81.25%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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