Csor.00g042850 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g042850
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionactin cytoskeleton-regulatory complex protein PAN1-like
LocationCsor_Chr07: 6427914 .. 6429788 (-)
RNA-Seq ExpressionCsor.00g042850
SyntenyCsor.00g042850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACCTGGAACGTGTACATGTTCCTCCATCTGAGCGAAATCTCAGGTCATCGTACTTACCTTCGTTGCCACCACCCTCGTCCACCATTTTAAAAAATGAAACAAAACTCAACTTTAGGATTTACCTGAAAGAGTACCTATTCCTCCATCTTGGTCGAATCCCTCCGAGAAAGGATCGTAGCTCAACATCGAGATGCATCTAGAACAAGTACTTGTTCCTCCGTCTGAGTAGAATCCCAGGTCATCGTACTCACCTCCACCCCACCCTCGTCCACCATTTTAGAAAACTAATCGAAACTCAACTTTGGGATGTATCCGAAAGGTGTACCTATTCCTCCATCTAGGCCGATTCCCTTCGAGAAGGGATCGCAACTCAACTTCGGGATGCACCTAGATTGAGTATCTGTTCCTCTATCTAAGCGGAATACCGGCTCATTGTACTTGTTTCTCGAGAAGGAATTGCAGCTCAACTCCGGGATATACCTGGAACGAGTACTTGTTCCTCCGTCTGAGCGGAATCCTAGATCATTGTACTCACCCTCCACCGCTGTAACAAACCTAAATTTCTACTTACCTAGAGTTGCTACCCTTATCATCATCATCTATACAAATTAAACATTTAAAACTTCATCTTAAAACACCGTCGTCATCATCATACTCACCTCTTGGAAAGAATAATTAATTTATTGATCTACTTATGTTATTCTCATTAACGACTTACTTGGAATTATTTTACAACCTTTTTTGCACTTAAAATATTTTTTAAGACCAAAAAATTATACAAAATATAAAGTAAGTTAAAAAAAAAGGCTAAAAAATATTTTTTATACTTTAAAAAAAATTAAAAATACTCCAACCATAGTTTTGGATGTAAACTTTTAATACATTTTTTTTAAAATACACTCCATTTTTTTAAAAAAAATGTTTAAAAAATTCTTCAAAACGTCAAAAAACACTTTTGAGCCTTTTAAAAAAACTTTAAAAAATGCTTTTATCATTAATACTGCCTTTACAAAATATTCATAAATTTTTAAAAGTAATATTAAAAATTTTGGAGATTATATTATTATCTACTTTTAAAATTTCATACTTATTTTAAGAATATTATCGTAATTTTTTAAATATTATTAAAATTTTAAAGAATTTTTTTAAAGGAAAGTGCGGACCGTTTTTATCCAATAAAGTATTGAATTGAATAAAAAAAAAAATAAAAAACAGCTTTTTTTTTTTTTTCTAATAAATTCAAAAACCGTAAATTGAATTAATAGAAAATGTTATATAAAGGAAGCCAGTAAAGAATCCAGAGTGTTTTTAGGATATATATATATTTTTTTTTAAAGAAAGTAATAATAGTTTTCACCTAAATAAGGTATTCAATTAAATGAGAAAAATAAACCATTGAATTCTAGAAAAAAAACCCCACAATTTAATGGCTAATAATTTAAAAAATTGTAAATTGAATTAACAAGTAAATGCTTTATAAAGGAAGCTAGAGAAGAATGAAAAAACACACAAAAAATGATCTCAGTCAATTTTAAAACGCTTTCAGGAGCTTGTGTTTTTATCCTCTTAGCGTTCCATTTTTCTACCCTAGGGCACAGGCTACAAGGACTAATGTGTTGAATGGGGATCTGAAACTCACTGGCTTAGAGAAGGGAACACAACTCAACTTTGGAATGCATTTAGACCGAGTACCTGTTCCTCCGTCTGGGTTGAATCCTGGGTCATCGTTCTCACCTCCGCTACCACCACTCGAGAAAGAATCGCAGCTCAACTTTGGAATGCACTTAGAACGAGTACCTGTTCCTCCGTCTGGGTTGAATCCTGGGTCATCCTTCTCACCTCCGCCACCACCACCCCAGAAGGGATCGTAG

mRNA sequence

ATGCACCTGGAACGTGTACATGTTCCTCCATCTGAGCGAAATCTCAGGGCACAGGCTACAAGGACTAATGTGTTGAATGGGGATCTGAAACTCACTGGCTTAGAGAAGGGAACACAACTCAACTTTGGAATGCATTTAGACCGAGTACCTGTTCCTCCGTCTGGGTTGAATCCTGGGTCATCGTTCTCACCTCCGCTACCACCACTCGAGAAAGAATCGCAGCTCAACTTTGGAATGCACTTAGAACGAGTACCTGTTCCTCCGTCTGGGTTGAATCCTGGGTCATCCTTCTCACCTCCGCCACCACCACCCCAGAAGGGATCGTAG

Coding sequence (CDS)

ATGCACCTGGAACGTGTACATGTTCCTCCATCTGAGCGAAATCTCAGGGCACAGGCTACAAGGACTAATGTGTTGAATGGGGATCTGAAACTCACTGGCTTAGAGAAGGGAACACAACTCAACTTTGGAATGCATTTAGACCGAGTACCTGTTCCTCCGTCTGGGTTGAATCCTGGGTCATCGTTCTCACCTCCGCTACCACCACTCGAGAAAGAATCGCAGCTCAACTTTGGAATGCACTTAGAACGAGTACCTGTTCCTCCGTCTGGGTTGAATCCTGGGTCATCCTTCTCACCTCCGCCACCACCACCCCAGAAGGGATCGTAG

Protein sequence

MHLERVHVPPSERNLRAQATRTNVLNGDLKLTGLEKGTQLNFGMHLDRVPVPPSGLNPGSSFSPPLPPLEKESQLNFGMHLERVPVPPSGLNPGSSFSPPPPPPQKGS
Homology
BLAST of Csor.00g042850 vs. NCBI nr
Match: KAG6595470.1 (hypothetical protein SDJN03_12023, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 216 bits (549), Expect = 1.43e-70
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0

Query: 1   MHLERVHVPPSERNLRAQATRTNVLNGDLKLTGLEKGTQLNFGMHLDRVPVPPSGLNPGS 60
           MHLERVHVPPSERNLRAQATRTNVLNGDLKLTGLEKGTQLNFGMHLDRVPVPPSGLNPGS
Sbjct: 1   MHLERVHVPPSERNLRAQATRTNVLNGDLKLTGLEKGTQLNFGMHLDRVPVPPSGLNPGS 60

Query: 61  SFSPPLPPLEKESQLNFGMHLERVPVPPSGLNPGSSFSPPPPPPQKGS 108
           SFSPPLPPLEKESQLNFGMHLERVPVPPSGLNPGSSFSPPPPPPQKGS
Sbjct: 61  SFSPPLPPLEKESQLNFGMHLERVPVPPSGLNPGSSFSPPPPPPQKGS 108

BLAST of Csor.00g042850 vs. NCBI nr
Match: KAG6595469.1 (hypothetical protein SDJN03_12022, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110 bits (274), Expect = 7.64e-26
Identity = 65/107 (60.75%), Postives = 74/107 (69.16%), Query Frame = 0

Query: 1   MHLERVHVPPSERNLRAQATRTNVLNGDLKLTGLEKGTQLNFGMHLDRVPVPPSGLNPGS 60
           MHLERVH+PPS RN      R++ L   L     +KG QLN  MHL+RVP+PPSG NP S
Sbjct: 159 MHLERVHIPPSGRN-----PRSSFLPPPLPA---KKGLQLNSEMHLERVPIPPSGRNPKS 218

Query: 61  SFSPPLPPLEKESQLNFGMHLERVPVPPSGLNPGSSFSPPPPPPQKG 107
           SF PP  P +K  QLN  MHLERVP+PPSG NP SSF PPP PP+KG
Sbjct: 219 SFLPPPLPPKKGLQLNSEMHLERVPIPPSGRNPRSSFLPPPLPPKKG 257

BLAST of Csor.00g042850 vs. NCBI nr
Match: XP_011654399.2 (proline-rich protein HaeIII subfamily 1-like [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 1.14e-09
Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = 0

Query: 39  QLNFGMHLDRVPVPPSGLNPGSSFSPPLPPLE--KESQLNFGMHLERVPVPPSGLNPGSS 98
           + +FGM+   +P+PPSG +  +S S P PP      +   FGM+  RVP+PPSGLNP +S
Sbjct: 79  KFDFGMYPKGIPIPPSGPSQRTSDSSPPPPSNFFHHNTFGFGMYQRRVPIPPSGLNPRTS 138

Query: 99  FSPPPPPPQ 105
           +SPPPPP Q
Sbjct: 139 YSPPPPPSQ 147

BLAST of Csor.00g042850 vs. NCBI nr
Match: EOY16631.1 (Uncharacterized protein TCM_035454 [Theobroma cacao])

HSP 1 Score: 59.3 bits (142), Expect = 1.75e-08
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 0

Query: 36  KGTQLNFGMHLDRVPVPPSGLNPGSSFSPPLPPLEKESQLNFGMHLERVPVPPSGLNPGS 95
           + +QLNFG+    VP+PPSG +  +S SPP PP  +   LNFGM  + VP+PPSG +  +
Sbjct: 30  EASQLNFGVFPKGVPIPPSGPSRRTSASPPPPPPIR--LLNFGMFPKGVPIPPSGPSRRT 89

Query: 96  SFSPPPPPP 104
           S SPPPPPP
Sbjct: 90  SASPPPPPP 96

BLAST of Csor.00g042850 vs. NCBI nr
Match: XP_007019406.2 (PREDICTED: formin-like protein 20 [Theobroma cacao])

HSP 1 Score: 59.3 bits (142), Expect = 2.19e-08
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 0

Query: 36  KGTQLNFGMHLDRVPVPPSGLNPGSSFSPPLPPLEKESQLNFGMHLERVPVPPSGLNPGS 95
           + +QLNFG+    VP+PPSG +  +S SPP PP  +   LNFGM  + VP+PPSG +  +
Sbjct: 42  EASQLNFGVFPKGVPIPPSGPSRRTSASPPPPPPIR--LLNFGMFPKGVPIPPSGPSRRT 101

Query: 96  SFSPPPPPP 104
           S SPPPPPP
Sbjct: 102 SASPPPPPP 108

BLAST of Csor.00g042850 vs. ExPASy TrEMBL
Match: A0A061FHV4 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_035454 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.47e-09
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 0

Query: 36  KGTQLNFGMHLDRVPVPPSGLNPGSSFSPPLPPLEKESQLNFGMHLERVPVPPSGLNPGS 95
           + +QLNFG+    VP+PPSG +  +S SPP PP  +   LNFGM  + VP+PPSG +  +
Sbjct: 30  EASQLNFGVFPKGVPIPPSGPSRRTSASPPPPPPIR--LLNFGMFPKGVPIPPSGPSRRT 89

Query: 96  SFSPPPPPP 104
           S SPPPPPP
Sbjct: 90  SASPPPPPP 96

BLAST of Csor.00g042850 vs. ExPASy TrEMBL
Match: A0A6J1HRH7 (actin cytoskeleton-regulatory complex protein PAN1-like OS=Cucurbita maxima OX=3661 GN=LOC111467141 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.75e-06
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 0

Query: 34  LEKGTQLNFGMHLDRVPVPPSGLNPGSSFSPPLPPLEKESQLNFGMHLERVPVPPSGLNP 93
           L K +++NFGM    VP+PPSG +  +S  PP PP     ++NFGM  + VP+PPSG + 
Sbjct: 397 LNKQSKINFGMLPKGVPIPPSGPSHRTSDYPPPPPHVLWPKINFGMLPKDVPIPPSGPSQ 456

Query: 94  GSSFSPPPPP 103
            +S  PPPPP
Sbjct: 457 RTSDYPPPPP 466

BLAST of Csor.00g042850 vs. ExPASy TrEMBL
Match: A0A1S2Y3N8 (proline-rich protein 2-like OS=Cicer arietinum OX=3827 GN=LOC101510047 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 9.62e-06
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 0

Query: 40  LNFGMHLDRVPVPPSGLNPGSSFSPPLPPLEKESQLNFGMHLERVPVPPSGLNPGSSFSP 99
           LNFGM L +  +PPSG + GSS+SPP PP      LNFG+ L +  VPPSG + GSS SP
Sbjct: 48  LNFGM-LPKGHIPPSGPSTGSSYSPPPPP---HRNLNFGI-LPKGHVPPSGPSTGSSNSP 105

Query: 100 PPP 102
           PPP
Sbjct: 108 PPP 105

BLAST of Csor.00g042850 vs. ExPASy TrEMBL
Match: A0A2Z6N3Z2 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_15960 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.25e-05
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 0

Query: 38  TQLNFGMHLDRVPVPPSGLNPGSSFSPPLPPLEKESQLNFGMHLERVPVPPSGLNPGSSF 97
           + LNFG+ L + PVPPSG + G  + PP PP    S LNFG+ L + PVPPSG + GS+ 
Sbjct: 95  SNLNFGI-LPKGPVPPSGPS-GGFYDPPSPP-HHSSNLNFGI-LPKGPVPPSGPSEGSAD 154

Query: 98  SPPPP 102
           SPPPP
Sbjct: 155 SPPPP 155

BLAST of Csor.00g042850 vs. ExPASy TrEMBL
Match: A0A2K3KAU6 (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g061602 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.03e-05
Identity = 32/56 (57.14%), Postives = 37/56 (66.07%), Query Frame = 0

Query: 46  LDRVPVPPSGLNPGSSFSPPLPPLEKESQLNFGMHLERVPVPPSGLNPGSSFSPPP 101
           L + PVPPSG + GSS SPP P     + LNFGM L + PVPPSG + G S SPPP
Sbjct: 2   LPKGPVPPSGPSRGSSNSPPPP--HHSANLNFGM-LPKGPVPPSGPSGGISASPPP 54

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6595470.11.43e-70100.00hypothetical protein SDJN03_12023, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6595469.17.64e-2660.75hypothetical protein SDJN03_12022, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_011654399.21.14e-0949.28proline-rich protein HaeIII subfamily 1-like [Cucumis sativus][more]
EOY16631.11.75e-0852.17Uncharacterized protein TCM_035454 [Theobroma cacao][more]
XP_007019406.22.19e-0852.17PREDICTED: formin-like protein 20 [Theobroma cacao][more]
Match NameE-valueIdentityDescription
A0A061FHV48.47e-0952.17Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_035454 PE=4 SV=1[more]
A0A6J1HRH71.75e-0647.14actin cytoskeleton-regulatory complex protein PAN1-like OS=Cucurbita maxima OX=3... [more]
A0A1S2Y3N89.62e-0657.14proline-rich protein 2-like OS=Cicer arietinum OX=3827 GN=LOC101510047 PE=4 SV=1[more]
A0A2Z6N3Z21.25e-0553.85Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_15960 PE=4 SV=... [more]
A0A2K3KAU65.03e-0557.14Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g06160... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g042850.m01Csor.00g042850.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity