Csor.00g041700 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g041700
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr07: 5553173 .. 5553463 (+)
RNA-Seq ExpressionCsor.00g041700
SyntenyCsor.00g041700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTGAGGGAGATGGATTTGAGGGAGTGGAAGTGGGCGTTGGTTGGGTTGGTTCTGGTGGGCGCTTGCTTTAGCAACGGAGTGGTGGTGGAAGGCAGTAGTAGGCGGTCTTGGATGTTGCCAGTGAAGCTTCACAAAGGGGGTTTTGAGGCATATGATTCAAACATGATTGCCACCTTGGGTATTGAATGCAAGTGTTGTGATGATGAGATTGGAGGTAAATGCAGTACTCACTTCGCCGCAGCTTCTTGCTCTAATCTCCGTTGTTCTCCTTGGAAACACTATTAG

mRNA sequence

ATGGATTTGAGGGAGATGGATTTGAGGGAGTGGAAGTGGGCGTTGGTTGGGTTGGTTCTGGTGGGCGCTTGCTTTAGCAACGGAGTGGTGGTGGAAGGCAGTAGTAGGCGGTCTTGGATGTTGCCAGTGAAGCTTCACAAAGGGGGTTTTGAGGCATATGATTCAAACATGATTGCCACCTTGGGTATTGAATGCAAGTGTTGTGATGATGAGATTGGAGGTAAATGCAGTACTCACTTCGCCGCAGCTTCTTGCTCTAATCTCCGTTGTTCTCCTTGGAAACACTATTAG

Coding sequence (CDS)

ATGGATTTGAGGGAGATGGATTTGAGGGAGTGGAAGTGGGCGTTGGTTGGGTTGGTTCTGGTGGGCGCTTGCTTTAGCAACGGAGTGGTGGTGGAAGGCAGTAGTAGGCGGTCTTGGATGTTGCCAGTGAAGCTTCACAAAGGGGGTTTTGAGGCATATGATTCAAACATGATTGCCACCTTGGGTATTGAATGCAAGTGTTGTGATGATGAGATTGGAGGTAAATGCAGTACTCACTTCGCCGCAGCTTCTTGCTCTAATCTCCGTTGTTCTCCTTGGAAACACTATTAG

Protein sequence

MDLREMDLREWKWALVGLVLVGACFSNGVVVEGSSRRSWMLPVKLHKGGFEAYDSNMIATLGIECKCCDDEIGGKCSTHFAAASCSNLRCSPWKHY
Homology
BLAST of Csor.00g041700 vs. NCBI nr
Match: KAG6595355.1 (hypothetical protein SDJN03_11908, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 211 bits (536), Expect = 5.72e-69
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0

Query: 1  MDLREMDLREWKWALVGLVLVGACFSNGVVVEGSSRRSWMLPVKLHKGGFEAYDSNMIAT 60
          MDLREMDLREWKWALVGLVLVGACFSNGVVVEGSSRRSWMLPVKLHKGGFEAYDSNMIAT
Sbjct: 1  MDLREMDLREWKWALVGLVLVGACFSNGVVVEGSSRRSWMLPVKLHKGGFEAYDSNMIAT 60

Query: 61 LGIECKCCDDEIGGKCSTHFAAASCSNLRCSPWKHY 96
          LGIECKCCDDEIGGKCSTHFAAASCSNLRCSPWKHY
Sbjct: 61 LGIECKCCDDEIGGKCSTHFAAASCSNLRCSPWKHY 96

BLAST of Csor.00g041700 vs. NCBI nr
Match: KAE8649554.1 (hypothetical protein Csa_018195 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 1.62e-10
Identity = 38/72 (52.78%), Postives = 45/72 (62.50%), Query Frame = 0

Query: 6  MDLREWKWALVGLVLVGACFSNGV-VVEGSSRRSWMLPV-KLHKGGFEAYDSNMIATLGI 65
          M    +K   +G +L    F NGV VVEGSSR   + P+ KL KG    YDS + AT+GI
Sbjct: 1  MGFVNFKCLFLGFLLTFVPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGI 60

Query: 66 ECKCCDDEIGGK 75
          ECKCCD EIGGK
Sbjct: 61 ECKCCD-EIGGK 71

BLAST of Csor.00g041700 vs. NCBI nr
Match: KCW65605.1 (hypothetical protein EUGRSUZ_G02995 [Eucalyptus grandis])

HSP 1 Score: 62.4 bits (150), Expect = 2.23e-10
Identity = 34/79 (43.04%), Postives = 44/79 (55.70%), Query Frame = 0

Query: 17 GLVLVGACFSNGVVVEGSSRRSWMLPVKLHKGGFEAYDSNMIATLGIECKCCDDEIGGKC 76
          GL   G      V +  S R     P  +H    +  DSNM ATLG++CKCCD + GG+C
Sbjct: 3  GLKHFGLLVMMIVAMYTSPREVAAAPYFVHH---QLRDSNMYATLGVQCKCCDGK-GGEC 62

Query: 77 STHFAAASCSNLRCSPWKH 95
           + +A  SCS LRC PWK+
Sbjct: 63 RSEWAEGSCSKLRCLPWKY 77

BLAST of Csor.00g041700 vs. NCBI nr
Match: KAF8022120.1 (hypothetical protein BT93_G2305 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 62.0 bits (149), Expect = 3.16e-10
Identity = 36/79 (45.57%), Postives = 43/79 (54.43%), Query Frame = 0

Query: 17 GLVLVGACFSNGVVVEGSSRRSWMLPVKLHKGGFEAYDSNMIATLGIECKCCDDEIGGKC 76
          GL   G      VVV  S R     P  +H    +  DSNM ATLG+ CKCCD E  G+C
Sbjct: 3  GLKHFGLLVMMIVVVCTSPREVAAAPSFIHH---QLRDSNMYATLGVHCKCCDGE-RGEC 62

Query: 77 STHFAAASCSNLRCSPWKH 95
           + +A  SCS LRC PWK+
Sbjct: 63 RSEWAEGSCSKLRCLPWKY 77

BLAST of Csor.00g041700 vs. NCBI nr
Match: KCW65607.1 (hypothetical protein EUGRSUZ_G02997 [Eucalyptus grandis])

HSP 1 Score: 58.5 bits (140), Expect = 7.27e-09
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 0

Query: 54 DSNMIATLGIECKCCDDEIGGKCSTHFAAASCSNLRCSPWKH 95
          DS+M ATLG++CKCCD E  G+C + +A  SCS LRC PWK+
Sbjct: 37 DSSMYATLGVQCKCCDGE-RGECRSEWAEGSCSKLRCLPWKY 77

BLAST of Csor.00g041700 vs. ExPASy TrEMBL
Match: A0A0A0KXD1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303090 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 7.53e-23
Identity = 53/93 (56.99%), Postives = 60/93 (64.52%), Query Frame = 0

Query: 6  MDLREWKWALVGLVLVGACFSNGV-VVEGSSRRSWMLPV-KLHKGGFEAYDSNMIATLGI 65
          M    +K   +G +L    F NGV VVEGSSR   + P+ KL KG    YDS + AT+GI
Sbjct: 1  MGFVNFKCLFLGFLLTFVPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGI 60

Query: 66 ECKCCDDEIGGKCSTHFAAASCSNLRCSPWKHY 96
          ECKCCD EIGGKCST F   SCSNL CSPWK Y
Sbjct: 61 ECKCCD-EIGGKCSTEFTT-SCSNLHCSPWKQY 91

BLAST of Csor.00g041700 vs. ExPASy TrEMBL
Match: A0A059BIU0 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02995 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.08e-10
Identity = 34/79 (43.04%), Postives = 44/79 (55.70%), Query Frame = 0

Query: 17 GLVLVGACFSNGVVVEGSSRRSWMLPVKLHKGGFEAYDSNMIATLGIECKCCDDEIGGKC 76
          GL   G      V +  S R     P  +H    +  DSNM ATLG++CKCCD + GG+C
Sbjct: 3  GLKHFGLLVMMIVAMYTSPREVAAAPYFVHH---QLRDSNMYATLGVQCKCCDGK-GGEC 62

Query: 77 STHFAAASCSNLRCSPWKH 95
           + +A  SCS LRC PWK+
Sbjct: 63 RSEWAEGSCSKLRCLPWKY 77

BLAST of Csor.00g041700 vs. ExPASy TrEMBL
Match: A0A059BH96 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02997 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.52e-09
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 0

Query: 54 DSNMIATLGIECKCCDDEIGGKCSTHFAAASCSNLRCSPWKH 95
          DS+M ATLG++CKCCD E  G+C + +A  SCS LRC PWK+
Sbjct: 37 DSSMYATLGVQCKCCDGE-RGECRSEWAEGSCSKLRCLPWKY 77

BLAST of Csor.00g041700 vs. ExPASy TrEMBL
Match: A0A1S2XQG0 (uncharacterized protein LOC101514220 OS=Cicer arietinum OX=3827 GN=LOC101514220 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.23e-07
Identity = 24/42 (57.14%), Postives = 33/42 (78.57%), Query Frame = 0

Query: 55 SNMIATLGIECKCCDDEIGGKCSTHFAAASCSNLRCSPWKHY 96
          SN++ATLG+ CKCCD  IGG C++ +   SC+NL+CSPWK +
Sbjct: 40 SNILATLGVVCKCCDG-IGGTCTSTWKK-SCNNLKCSPWKSH 79

BLAST of Csor.00g041700 vs. ExPASy TrEMBL
Match: A0A0B2SRB0 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_006373 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.26e-07
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 0

Query: 55 SNMIATLGIECKCCDDEIGGKCSTHFAAASCSNLRCSPWKHY 96
          S + ATLGI CKCCD   GG C++ +   SCSNL+CSPWK +
Sbjct: 44 SKIFATLGIVCKCCDGVEGGACTSTWTE-SCSNLQCSPWKSH 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6595355.15.72e-69100.00hypothetical protein SDJN03_11908, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8649554.11.62e-1052.78hypothetical protein Csa_018195 [Cucumis sativus][more]
KCW65605.12.23e-1043.04hypothetical protein EUGRSUZ_G02995 [Eucalyptus grandis][more]
KAF8022120.13.16e-1045.57hypothetical protein BT93_G2305 [Corymbia citriodora subsp. variegata][more]
KCW65607.17.27e-0959.52hypothetical protein EUGRSUZ_G02997 [Eucalyptus grandis][more]
Match NameE-valueIdentityDescription
A0A0A0KXD17.53e-2356.99Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303090 PE=4 SV=1[more]
A0A059BIU01.08e-1043.04Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02995 PE=4 SV... [more]
A0A059BH963.52e-0959.52Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02997 PE=4 SV... [more]
A0A1S2XQG03.23e-0757.14uncharacterized protein LOC101514220 OS=Cicer arietinum OX=3827 GN=LOC101514220 ... [more]
A0A0B2SRB05.26e-0757.14Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_006373 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37078FAMILY NOT NAMEDcoord: 50..95
NoneNo IPR availablePANTHERPTHR37078:SF6SUBFAMILY NOT NAMEDcoord: 50..95
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..24
score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g041700.m01Csor.00g041700.m01mRNA