Csor.00g041590 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g041590
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionglycine-rich protein 5-like
LocationCsor_Chr07: 5476595 .. 5476999 (-)
RNA-Seq ExpressionCsor.00g041590
SyntenyCsor.00g041590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCCAACAGCAGTATTCATCATCCTACCCGTTGTCTTCGTTTCCCTCTGGATTACTATATGTGTGTTGAGTATTATTTGTCGGAGCAGAGTTTCTAATGGCAAAGTTAGCGGCGGTGGTGTTGGTGCTTATGATGGGAACCAAGTCAATATAGATATTGATGATGGTGGTAGCGGCGGATTTAACCACGACAACAACAATGGATGGGGCAGTGACGCTGGAGGTGGCGGCTATGACTTTGGTGGGGGAGGAGGATATGACTTTGGAGGTGGAGGTGGAGGCGGCGGAGGAGGAGGATGTGACTTTGGAGGTGGTGGTGGTGGCGGTGGCGGAGGTGGGGGAGGAGGAGGAGGGTGTGATTCTGGAGGCGGCGGCGGTGGTGGAGGCTCATCTGGCTATTGA

mRNA sequence

ATGGTTCCAACAGCAGTATTCATCATCCTACCCGTTGTCTTCGTTTCCCTCTGGATTACTATATGTGTGTTGAGTATTATTTGTCGGAGCAGAGTTTCTAATGGCAAAGTTAGCGGCGGTGGTGTTGGTGCTTATGATGGGAACCAAGTCAATATAGATATTGATGATGGTGGTAGCGGCGGATTTAACCACGACAACAACAATGGATGGGGCAGTGACGCTGGAGGTGGCGGCTATGACTTTGGTGGGGGAGGAGGATATGACTTTGGAGGTGGAGGTGGAGGCGGCGGAGGAGGAGGATGTGACTTTGGAGGTGGTGGTGGTGGCGGTGGCGGAGGTGGGGGAGGAGGAGGAGGGTGTGATTCTGGAGGCGGCGGCGGTGGTGGAGGCTCATCTGGCTATTGA

Coding sequence (CDS)

ATGGTTCCAACAGCAGTATTCATCATCCTACCCGTTGTCTTCGTTTCCCTCTGGATTACTATATGTGTGTTGAGTATTATTTGTCGGAGCAGAGTTTCTAATGGCAAAGTTAGCGGCGGTGGTGTTGGTGCTTATGATGGGAACCAAGTCAATATAGATATTGATGATGGTGGTAGCGGCGGATTTAACCACGACAACAACAATGGATGGGGCAGTGACGCTGGAGGTGGCGGCTATGACTTTGGTGGGGGAGGAGGATATGACTTTGGAGGTGGAGGTGGAGGCGGCGGAGGAGGAGGATGTGACTTTGGAGGTGGTGGTGGTGGCGGTGGCGGAGGTGGGGGAGGAGGAGGAGGGTGTGATTCTGGAGGCGGCGGCGGTGGTGGAGGCTCATCTGGCTATTGA

Protein sequence

MVPTAVFIILPVVFVSLWITICVLSIICRSRVSNGKVSGGGVGAYDGNQVNIDIDDGGSGGFNHDNNNGWGSDAGGGGYDFGGGGGYDFGGGGGGGGGGGCDFGGGGGGGGGGGGGGGGCDSGGGGGGGGSSGY
Homology
[Close]
BLAST of Csor.00g041590 vs. NCBI nr
Match: KAG6595344.1 (hypothetical protein SDJN03_11897, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 184 bits (468), Expect = 2.13e-57
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MVPTAVFIILPVVFVSLWITICVLSIICRSRVSNGKVSGGGVGAYDGNQVNIDIDDGGSG 60
           MVPTAVFIILPVVFVSLWITICVLSIICRSRVSNGKVSGGGVGAYDGNQVNIDIDDGGSG
Sbjct: 1   MVPTAVFIILPVVFVSLWITICVLSIICRSRVSNGKVSGGGVGAYDGNQVNIDIDDGGSG 60

Query: 61  GFNHDNNNGWGSDAGGGGYDFGGGGGYDFGGGGGGGGGGGCDFGGGGGGGGGGGGGGGGC 120
           GFNHDNNNGWGSDAGGGGYDFGGGGGYDFGGGGGGGGGGGCDFGGGGGGGGGGGGGGGGC
Sbjct: 61  GFNHDNNNGWGSDAGGGGYDFGGGGGYDFGGGGGGGGGGGCDFGGGGGGGGGGGGGGGGC 120

Query: 121 DSGGGGGGGGSSGY 134
           DSGGGGGGGGSSGY
Sbjct: 121 DSGGGGGGGGSSGY 134

[Close]
BLAST of Csor.00g041590 vs. NCBI nr
Match: XP_022931866.1 (glycine-rich protein 5-like [Cucurbita moschata])

HSP 1 Score: 176 bits (446), Expect = 4.92e-54
Identity = 133/135 (98.52%), Postives = 133/135 (98.52%), Query Frame = 0 

Query: 1   MVPTAVFIILPVVFVSLWITICVLSIICRSRVSNGKVSGGGVGAYDGNQVNIDIDDGGSG 60
           MVPTAVFIILPVVFVSLWITICVLSIICRSRVSNGKVSGGGVGAYDGNQVNIDIDDGGSG
Sbjct: 1   MVPTAVFIILPVVFVSLWITICVLSIICRSRVSNGKVSGGGVGAYDGNQVNIDIDDGGSG 60

Query: 61  GFNHDNNNGWGSDAGGGGYDFGGGGGYDFGGGGGGGGGGGCDFGGGGGGG--GGGGGGGG 120
           GFNHDNNNGWGSDAGGGGYDFGGGGGYDFGGGGGGGGGGGCDFGGGGGGG  GGGGGGGG
Sbjct: 61  GFNHDNNNGWGSDAGGGGYDFGGGGGYDFGGGGGGGGGGGCDFGGGGGGGDGGGGGGGGG 120

Query: 121 GCDSGGGGGGGGSSG 133
           GCDSGGGGGGGGSSG
Sbjct: 121 GCDSGGGGGGGGSSG 135

[Close]
BLAST of Csor.00g041590 vs. NCBI nr
Match: KAF3962666.1 (hypothetical protein CMV_012843 [Castanea mollissima])

HSP 1 Score: 48.1 bits (113), Expect = 6.94e-04
Identity = 47/85 (55.29%), Postives = 55/85 (64.71%), Query Frame = 0 

Query: 7  FIILPVVFVSLWITICVLSIIC-RSRVS-NGKVSGGG---VGAYDGNQVNIDIDDGGSGG 66
          FIILPVVF SL + I VL+IIC R RV  +G + GGG   +G Y+G     DI+ GG+GG
Sbjct: 5  FIILPVVFFSLILVIVVLNIICGRRRVGFSGNIHGGGGEGIGGYEGGGGGFDIETGGAGG 64

Query: 67 FNHDNNNGWGSDAGGGGYDFGGGGG 86
             D   G G D GGGG DFGGGGG
Sbjct: 65 ---DLVGGGGGDFGGGGGDFGGGGG 86

[Close]
BLAST of Csor.00g041590 vs. ExPASy TrEMBL
Match: A0A6J1EUT9 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111438148 PE=4 SV=1)

HSP 1 Score: 176 bits (446), Expect = 2.38e-54
Identity = 133/135 (98.52%), Postives = 133/135 (98.52%), Query Frame = 0 

Query: 1   MVPTAVFIILPVVFVSLWITICVLSIICRSRVSNGKVSGGGVGAYDGNQVNIDIDDGGSG 60
           MVPTAVFIILPVVFVSLWITICVLSIICRSRVSNGKVSGGGVGAYDGNQVNIDIDDGGSG
Sbjct: 1   MVPTAVFIILPVVFVSLWITICVLSIICRSRVSNGKVSGGGVGAYDGNQVNIDIDDGGSG 60

Query: 61  GFNHDNNNGWGSDAGGGGYDFGGGGGYDFGGGGGGGGGGGCDFGGGGGGG--GGGGGGGG 120
           GFNHDNNNGWGSDAGGGGYDFGGGGGYDFGGGGGGGGGGGCDFGGGGGGG  GGGGGGGG
Sbjct: 61  GFNHDNNNGWGSDAGGGGYDFGGGGGYDFGGGGGGGGGGGCDFGGGGGGGDGGGGGGGGG 120

Query: 121 GCDSGGGGGGGGSSG 133
           GCDSGGGGGGGGSSG
Sbjct: 121 GCDSGGGGGGGGSSG 135

The following BLAST results are available for this feature:
BLAST of Csor.00g041590 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g041590 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6595344.12.13e-57100.00hypothetical protein SDJN03_11897, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022931866.14.92e-5498.52glycine-rich protein 5-like [Cucurbita moschata][more]
KAF3962666.16.94e-0455.29hypothetical protein CMV_012843 [Castanea mollissima][more]
BLAST of Csor.00g041590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EUT92.38e-5498.52glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111438148 PE=4 S... [more]
BLAST of Csor.00g041590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g041590.m01Csor.00g041590.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane