Csor.00g041340 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g041340
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Pectin lyase-like superfamily protein
Location	Csor_Chr02: 5670791 .. 5674268 (-)
RNA-Seq Expression	Csor.00g041340
Synteny	Csor.00g041340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCCGTTTTTCCTCTTCATTTTCATCTGCTTCGCTGCTCTTTTGTCCTCTCCACTTGCCGCCGGTGAGCTCACTACCTGCTCCGGGATAGTCCCCATGAAGTATCGGAGCGATAAGATTTCCATTGCCGATTTTGGGGGTGTCGGCGATGGCCGTACATTGAACACTAGAGCGTTTCGAGCTGCGATTTATCGAATTCAACATTTGAGAAGAAGAGGGGGTACTTTGCTTTACATTCCTCCTGGGGTTTACTTGACGGAGAGCTTTAATCTCACTAGCCATATGACTCTGTATCTTGCAAAAGACGCTGTTATCAAAGCTGTTCAGGTATATGATTCTCACTGAACTTCTTTGTTGTTTCTCTTATTTGTGATTCAGTAGTGTGGCTAGTGTTGGTTGTTGTTGAATGAGAGAATTTCCCTGATTTTTCGCTGGTGATTCTCGTGCTTAGGGTTTCTTTTGTTTGGTGATTCTGATATTGAGCTTATTTTTGTCGGTGATTCTGAATGGTTTCTAGATTAGGGGATTGGGATTTATCAGAATGAACATGTGTTCTGGTGGGTGGGTATTCGATTAAGCTGTGGCATGTGCATCCACTCTAAATTAATAACATTATATATATAATTATGATGGACCGCCGACAGGCTGTTCTTTGTCGGATTTGATGCTAAATTTTATTAGAATGTGATCCCATTTTAGTTGATTGATCCAATTCAAAGTTCTGATTTGCTAATTTGTGCTTATTATTTTGCTGATCTGGACATCAATTTCAAGCAACCAAAAATTGGCTTGTCCCATAGTGGAAATATCCATGTCGAAACATGGTGGTTCTTTTTAGAAGGATGATGACAATGTTACTAATTAGATGTAGTAATTACTTCAACTCAATCCATTCTATTTCAGCCAGCAAAACAGGCCATAAAGGATCTGTTTTGTTCTTTGTTTTTGGGAGATTCTACCTCGATTGGAGAGGGAAACAAAACGTTACTTCTAACGGTGTGGAAAGCTCACCCTAGAAGACACGTTTTAAAACCGTGAGGCTGACGACGATATGTAACAGCCGAAGCAGACAATATCGACTAGTGATGAGCTTGGACTAGTACAAATGGTATCAGAGCCAGGTTCTACCATGCGAGGCAGTCTAGTCGGAGTAGGGCTAGATTATCTCTATAGTAGATGCGTTTTAAAACCATGAGGCTGGTTGAGAGTGATATGTAATGCGGTGAAGGCAAACAATATGGTACAGTAGCGGTGGGCTTAGGCTATTACAGTTTTCCCGGAAGGAACTTTACCTAGTTCTCTAGTACTTCAAGTATAATGGCGTGGAAATTATGTCAAGATTTTGAAATTAGAACTGTTATATGTTGGTCGTTGTCTAAAAATTTGACTCCTATATGATTACCCGCTTCACAATAAGCATTTTTATAATTCTGGGTTTGTATGCATCCTAATGGATGGTCAATTAGTGAGTGCAAGATCTTTTGGTCTAATAGTTTTCACCAATCGTGTTACTGTATCCATCAACTTCTCGATGATGTAATTTTCTGCAGATGATGAGAATTGTCCGATCTTTTCATAAAATTTCTCTCTTTTTTTAAACTAGTTTAATCCTTTCACTTTTATTGTTTTACTTTTGTATTAAAGCTTTTGTTTTTTTTTCTCTGTTTGATGTCCAGGATTCTTCAAATTGGCCAGTGATCGAGCCGTTGCCATCATATGGAAGAGGGAGGGAGCCGCCCTGGTGGAAGATAGGTAAGCTTTATTCATGGAGATGGTGTTCATGATGTGGTGATCACTGGTATGAATCATCTAGTTCTTTTTAAAATGTATATAAAGGATATTGGCCACAAAACCGGCGGTTACCTGTGTTGTGTCTTGGAACAAAAGTATTTATATTACTAGCCCGATTTAAATTTGTTTGTGGTAGGTGTAGAATGGGACCATTGATGGCCAAGGGTGATGTCTGGTGGAATATGTTGAGGACCAAGGACCTTCTGAATGTACACTAGGCATAATCTCGTTGAATTTATTCAATTCTCCTAATAACATCATTTCCAACGTAATGTTAGCTGAAACTCTCCGTTTTTGGAACATTCATCCAGTTTACTGCAGGTAAAGAATTAAAAGTTAGTTTTCACCAATCACGTTACAGGTAAGAATTAAAGTTCCGTTTTCAATCACGTTACAGCTCCAATAATTGCTCATAATCGTGGTTTGAAATACCCCCTTGAATGTTCATCATATTTTCTTTTTCTGCTTTTCTGCCAACCAAAAACACTTATTTAGCTTGTGAGATCCAACATTGGTTGGAGAGAGAAACCTAAGCATTTTTTATATAAGGTATGAAAATCTCTCCTTAGTAGAGCGTTTTTTTAAATCATCGAGGTTGATGGACGCTACGTAGCGGGGAAAAGCGGATTAATATCTTACATAGCGGTGAGCTTGGACTAAACAAATGGTATCGGAAGTTAGTCCATCGAGCAATTGGTGCCAACGAGGACGTGGGGTTCCCGAGGGGTGGATTGTGAGAATCCCACCTGGGTTATGGTTGGGAGGAGTAGAACGAAGTATTCCTTATAGGTGGTTTGGAAAACTCTCCCTAGCAGGACGCGTTTTAAAAACCGTAGAGGTTGACGGTGATACATAATGGGCCAAAACGGAGCAATATCCTACTAGGGTGGGCTTGAGCTATTTAAATCCTTTCAGGGTAATATCAACAGCCAATGTGCGCTCGTACTTTTTTTCTAATCCTTCTGTTGCAGTAACGTTGTTGGGAGCCACAGAGGCAACGGTATCTAATAAGTTTTTTCTACTCAGTTCTATTGATTTCTATCTTTTCCATCCCACTCGATATTTATCTATATTTATTTCATTTTTAAATTGTAATTCTTTTTTACATGAAAATTTCATTTCACTTGATTATTTCGGATCAACTAGGTTGATTAAATTGTATTTAGTTCAAATAATGTCCCGGATGTTTCGTTTATAATTTTAGTCTAAAAAACTATAAATATATAAATAGATAAGATTAATAGACTCGCCGGTCCCTCGTCGTCTCAGTCAGCTGGCGAGTCGGCTTGAGTCGGTTGGAACGGGCTCACTGTCGCCTTGAAAGTGAAACCTTTTGAAGAATCTCTTATCACAATCCTTCCAATAAAATGTAAGTGTATCATAAGCCAGATTTCCATGTCGTCTTTCATCAGATCGTCACTTTTGGAAATTGAAATTTTCGCCTCCATGGCCTAATTTGTTTGAAGCTTCACTCTATGGCTATAATTGCGATGCCCAGGATTTGTGGCGCGACCAGGAGGACTTCATTAATCGGCCTTCCCAACGCCCGAACCGGAGGATGATCGAGAACAGCAGCCTTACTTTTCAAGAAACAATCAATATCAAGGTCCTGAAGTTTATTCGGCTCGTTTGTTTTCGGTTGGCTATTTTGACTCATTTCATCGTTTCGTTGTGGCGTAGCTGA

mRNA sequence

ATGATGCCGTTTTTCCTCTTCATTTTCATCTGCTTCGCTGCTCTTTTGTCCTCTCCACTTGCCGCCGGTGAGCTCACTACCTGCTCCGGGATAGTCCCCATGAAGTATCGGAGCGATAAGATTTCCATTGCCGATTTTGGGGGTGTCGGCGATGGCCGTACATTGAACACTAGAGCGTTTCGAGCTGCGATTTATCGAATTCAACATTTGAGAAGAAGAGGGGGTACTTTGCTTTACATTCCTCCTGGGGTTTACTTGACGGAGAGCTTTAATCTCACTAGCCATATGACTCTGTATCTTGCAAAAGACGCTGTTATCAAAGCTGTTCAGGATTCTTCAAATTGGCCAGTGATCGAGCCGTTGCCATCATATGGAAGAGGGAGGGAGCCGCCCTGGTGGAAGATAGATCGTCACTTTTGGAAATTGAAATTTTCGCCTCCATGGCCTAATTTGTTTGAAGCTTCACTCTATGGCTATAATTGCGATGCCCAGGATTTGTGGCGCGACCAGGAGGACTTCATTAATCGGCCTTCCCAACGCCCGAACCGGAGGATGATCGAGAACAGCAGCCTTACTTTTCAAGAAACAATCAATATCAAGGTCCTGAAGTTTATTCGGCTCGTTTGTTTTCGGTTGGCTATTTTGACTCATTTCATCGTTTCGTTGTGGCGTAGCTGA

Coding sequence (CDS)

ATGATGCCGTTTTTCCTCTTCATTTTCATCTGCTTCGCTGCTCTTTTGTCCTCTCCACTTGCCGCCGGTGAGCTCACTACCTGCTCCGGGATAGTCCCCATGAAGTATCGGAGCGATAAGATTTCCATTGCCGATTTTGGGGGTGTCGGCGATGGCCGTACATTGAACACTAGAGCGTTTCGAGCTGCGATTTATCGAATTCAACATTTGAGAAGAAGAGGGGGTACTTTGCTTTACATTCCTCCTGGGGTTTACTTGACGGAGAGCTTTAATCTCACTAGCCATATGACTCTGTATCTTGCAAAAGACGCTGTTATCAAAGCTGTTCAGGATTCTTCAAATTGGCCAGTGATCGAGCCGTTGCCATCATATGGAAGAGGGAGGGAGCCGCCCTGGTGGAAGATAGATCGTCACTTTTGGAAATTGAAATTTTCGCCTCCATGGCCTAATTTGTTTGAAGCTTCACTCTATGGCTATAATTGCGATGCCCAGGATTTGTGGCGCGACCAGGAGGACTTCATTAATCGGCCTTCCCAACGCCCGAACCGGAGGATGATCGAGAACAGCAGCCTTACTTTTCAAGAAACAATCAATATCAAGGTCCTGAAGTTTATTCGGCTCGTTTGTTTTCGGTTGGCTATTTTGACTCATTTCATCGTTTCGTTGTGGCGTAGCTGA

Protein sequence

MMPFFLFIFICFAALLSSPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGRTLNTRAFRAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEPLPSYGRGREPPWWKIDRHFWKLKFSPPWPNLFEASLYGYNCDAQDLWRDQEDFINRPSQRPNRRMIENSSLTFQETINIKVLKFIRLVCFRLAILTHFIVSLWRS

Homology

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BLAST of Csor.00g041340 vs. ExPASy Swiss-Prot
Match: A7PZL3 (Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.6e-25
Identity = 60/130 (46.15%), Postives = 83/130 (63.85%), Query Frame = 0


Query: 5   FLFIFICFAALLSSPLAAGELTTCSGIVPMKY-----RSDKISIADFGGVGDGRTLNTRA 64
           F  + +  A +L   ++ GE      +  ++Y     R+   S+ DFGGVGDG+TLNT+A
Sbjct: 22  FQVVSVLVAVVLLLSVSRGECRKGRILEALEYSAISCRAHSASLVDFGGVGDGQTLNTKA 81

Query: 65  FRAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIE 124
           F+ A+  +      GG  LY+P G +LT SF+LTSH TL+L +DAV+ A QD S WPVI+
Sbjct: 82  FQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSHFTLFLHRDAVLLASQDISQWPVIK 141

Query: 125 PLPSYGRGRE 130
           PLPSYGRGR+
Sbjct: 142 PLPSYGRGRD 151

[Close]

BLAST of Csor.00g041340 vs. NCBI nr
Match: KAG6605568.1 (putative polygalacturonase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 463 bits (1191), Expect = 1.23e-164
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MMPFFLFIFICFAALLSSPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGRTLNTRAF 60
           MMPFFLFIFICFAALLSSPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGRTLNTRAF
Sbjct: 1   MMPFFLFIFICFAALLSSPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGRTLNTRAF 60

Query: 61  RAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEP 120
           RAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEP
Sbjct: 61  RAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEP 120

Query: 121 LPSYGRGREPPWWKIDRHFWKLKFSPPWPNLFEASLYGYNCDAQDLWRDQEDFINRPSQR 180
           LPSYGRGREPPWWKIDRHFWKLKFSPPWPNLFEASLYGYNCDAQDLWRDQEDFINRPSQR
Sbjct: 121 LPSYGRGREPPWWKIDRHFWKLKFSPPWPNLFEASLYGYNCDAQDLWRDQEDFINRPSQR 180

Query: 181 PNRRMIENSSLTFQETINIKVLKFIRLVCFRLAILTHFIVSLWRS 225
           PNRRMIENSSLTFQETINIKVLKFIRLVCFRLAILTHFIVSLWRS
Sbjct: 181 PNRRMIENSSLTFQETINIKVLKFIRLVCFRLAILTHFIVSLWRS 225

[Close]

BLAST of Csor.00g041340 vs. NCBI nr
Match: KAG7035482.1 (putative polygalacturonase [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 259 bits (662), Expect = 3.92e-81
Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 0


Query: 1   MMPFFLFIFICFAALLSSPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGRTLNTRAF 60
           MMPFFLFIFICFAALLSSPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGRTLNTRAF
Sbjct: 1   MMPFFLFIFICFAALLSSPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGRTLNTRAF 60

Query: 61  RAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEP 120
           RAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEP
Sbjct: 61  RAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEP 120

Query: 121 LPSYGRGREPP 131
           LPSYGRGRE P
Sbjct: 121 LPSYGRGRERP 131

[Close]

BLAST of Csor.00g041340 vs. NCBI nr
Match: XP_022958006.1 (probable polygalacturonase [Cucurbita moschata])

HSP 1 Score: 258 bits (659), Expect = 1.11e-80
Identity = 129/131 (98.47%), Postives = 130/131 (99.24%), Query Frame = 0


Query: 1   MMPFFLFIFICFAALLSSPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGRTLNTRAF 60
           M+PFFLFIFICFAALLSSPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGRTLNTRAF
Sbjct: 1   MLPFFLFIFICFAALLSSPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGRTLNTRAF 60

Query: 61  RAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEP 120
           RAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEP
Sbjct: 61  RAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEP 120

Query: 121 LPSYGRGREPP 131
           LPSYGRGRE P
Sbjct: 121 LPSYGRGRERP 131

[Close]

BLAST of Csor.00g041340 vs. NCBI nr
Match: XP_023534421.1 (probable polygalacturonase isoform X1 [Cucurbita pepo subsp. pepo] >XP_023534422.1 probable polygalacturonase isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256 bits (653), Expect = 8.84e-80
Identity = 128/131 (97.71%), Postives = 129/131 (98.47%), Query Frame = 0


Query: 1   MMPFFLFIFICFAALLSSPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGRTLNTRAF 60
           M+PFFLFIFICF ALLSSPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGRTLNTRAF
Sbjct: 1   MLPFFLFIFICFDALLSSPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGRTLNTRAF 60

Query: 61  RAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEP 120
           RAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEP
Sbjct: 61  RAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEP 120

Query: 121 LPSYGRGREPP 131
           LPSYGRGRE P
Sbjct: 121 LPSYGRGRERP 131

[Close]

BLAST of Csor.00g041340 vs. NCBI nr
Match: XP_022995393.1 (probable polygalacturonase [Cucurbita maxima])

HSP 1 Score: 252 bits (643), Expect = 2.81e-78
Identity = 126/131 (96.18%), Postives = 127/131 (96.95%), Query Frame = 0


Query: 1   MMPFFLFIFICFAALLSSPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGRTLNTRAF 60
           M+PFFLFIFICF ALLS PLAAGELTTCSGIVPMKYRSDKISIADFGGVGDG TLNTRAF
Sbjct: 1   MLPFFLFIFICFDALLSPPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGHTLNTRAF 60

Query: 61  RAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEP 120
           RAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEP
Sbjct: 61  RAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEP 120

Query: 121 LPSYGRGREPP 131
           LPSYGRGRE P
Sbjct: 121 LPSYGRGRERP 131

[Close]

BLAST of Csor.00g041340 vs. ExPASy TrEMBL
Match: A0A6J1H0T7 (probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111459369 PE=3 SV=1)

HSP 1 Score: 258 bits (659), Expect = 5.37e-81
Identity = 129/131 (98.47%), Postives = 130/131 (99.24%), Query Frame = 0


Query: 1   MMPFFLFIFICFAALLSSPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGRTLNTRAF 60
           M+PFFLFIFICFAALLSSPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGRTLNTRAF
Sbjct: 1   MLPFFLFIFICFAALLSSPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGRTLNTRAF 60

Query: 61  RAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEP 120
           RAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEP
Sbjct: 61  RAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEP 120

Query: 121 LPSYGRGREPP 131
           LPSYGRGRE P
Sbjct: 121 LPSYGRGRERP 131

[Close]

BLAST of Csor.00g041340 vs. ExPASy TrEMBL
Match: A0A6J1K7T4 (probable polygalacturonase OS=Cucurbita maxima OX=3661 GN=LOC111490953 PE=3 SV=1)

HSP 1 Score: 252 bits (643), Expect = 1.36e-78
Identity = 126/131 (96.18%), Postives = 127/131 (96.95%), Query Frame = 0


Query: 1   MMPFFLFIFICFAALLSSPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGRTLNTRAF 60
           M+PFFLFIFICF ALLS PLAAGELTTCSGIVPMKYRSDKISIADFGGVGDG TLNTRAF
Sbjct: 1   MLPFFLFIFICFDALLSPPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGHTLNTRAF 60

Query: 61  RAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEP 120
           RAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEP
Sbjct: 61  RAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEP 120

Query: 121 LPSYGRGREPP 131
           LPSYGRGRE P
Sbjct: 121 LPSYGRGRERP 131

[Close]

BLAST of Csor.00g041340 vs. ExPASy TrEMBL
Match: A0A0A0KK36 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G150430 PE=3 SV=1)

HSP 1 Score: 231 bits (588), Expect = 2.42e-70
Identity = 115/131 (87.79%), Postives = 120/131 (91.60%), Query Frame = 0


Query: 1   MMPFFLFIFICFAALLSSPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGRTLNTRAF 60
           M+PF LFIFI F  L  SPLA  +LTTCSGIVPMKYR+DKISIADFGG+GDGRTLNTRAF
Sbjct: 1   MLPFPLFIFIFFTTLFPSPLAVADLTTCSGIVPMKYRNDKISIADFGGIGDGRTLNTRAF 60

Query: 61  RAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEP 120
           RAAIYRIQHLRRRGGTLLYIPPGVYLTE+FNLTSHMTLYLAK AVIKAVQDSSNWPVI P
Sbjct: 61  RAAIYRIQHLRRRGGTLLYIPPGVYLTETFNLTSHMTLYLAKGAVIKAVQDSSNWPVIAP 120

Query: 121 LPSYGRGREPP 131
           LPSYGRGRE P
Sbjct: 121 LPSYGRGRERP 131

[Close]

BLAST of Csor.00g041340 vs. ExPASy TrEMBL
Match: A0A5A7TLS6 (Putative polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001910 PE=3 SV=1)

HSP 1 Score: 228 bits (582), Expect = 1.91e-69
Identity = 113/131 (86.26%), Postives = 119/131 (90.84%), Query Frame = 0


Query: 1   MMPFFLFIFICFAALLSSPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGRTLNTRAF 60
           M+PF LF+FI F  L  SPLA  +L TCSGIVPMKYR+DKISIADFGG+GDGRTLNTRAF
Sbjct: 1   MVPFSLFVFIFFTTLFPSPLAVADLITCSGIVPMKYRNDKISIADFGGIGDGRTLNTRAF 60

Query: 61  RAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEP 120
           RAAIYRIQHLRRRGGTLLYIPPGVYLTE+FNLTSHMTLYLAK AVIKAVQDSSNWPVI P
Sbjct: 61  RAAIYRIQHLRRRGGTLLYIPPGVYLTETFNLTSHMTLYLAKGAVIKAVQDSSNWPVIAP 120

Query: 121 LPSYGRGREPP 131
           LPSYGRGRE P
Sbjct: 121 LPSYGRGRERP 131

[Close]

BLAST of Csor.00g041340 vs. ExPASy TrEMBL
Match: A0A1S3ATJ9 (probable polygalacturonase OS=Cucumis melo OX=3656 GN=LOC103482817 PE=3 SV=1)

HSP 1 Score: 228 bits (582), Expect = 1.91e-69
Identity = 113/131 (86.26%), Postives = 119/131 (90.84%), Query Frame = 0


Query: 1   MMPFFLFIFICFAALLSSPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGRTLNTRAF 60
           M+PF LF+FI F  L  SPLA  +L TCSGIVPMKYR+DKISIADFGG+GDGRTLNTRAF
Sbjct: 1   MVPFSLFVFIFFTTLFPSPLAVADLITCSGIVPMKYRNDKISIADFGGIGDGRTLNTRAF 60

Query: 61  RAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEP 120
           RAAIYRIQHLRRRGGTLLYIPPGVYLTE+FNLTSHMTLYLAK AVIKAVQDSSNWPVI P
Sbjct: 61  RAAIYRIQHLRRRGGTLLYIPPGVYLTETFNLTSHMTLYLAKGAVIKAVQDSSNWPVIAP 120

Query: 121 LPSYGRGREPP 131
           LPSYGRGRE P
Sbjct: 121 LPSYGRGRERP 131

[Close]

BLAST of Csor.00g041340 vs. TAIR 10
Match: AT4G23820.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 197.6 bits (501), Expect = 1.1e-50
Identity = 96/126 (76.19%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 6   LFIFICFAALLSSPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGRTLNTRAFRAAIY 65
           +F+F C    +SS        TCSGIVP++YR DKISI DFGGVGDGRT+NT+AFRAAIY
Sbjct: 8   IFLFSCL--FVSSSSLGDSEATCSGIVPLRYRYDKISITDFGGVGDGRTVNTKAFRAAIY 67

Query: 66  RIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEPLPSYG 125
           RIQHL+RRGGTLLYIPPGVYLTESFNLTSHMTLYLAK AVI+AVQD+ NWP+I+PLPSYG
Sbjct: 68  RIQHLKRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKGAVIRAVQDTWNWPLIDPLPSYG 127

Query: 126 RGREPP 132
           RGRE P
Sbjct: 128 RGRELP 131

[Close]

BLAST of Csor.00g041340 vs. TAIR 10
Match: AT5G41870.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 161.4 bits (407), Expect = 8.5e-40
Identity = 79/130 (60.77%), Postives = 99/130 (76.15%), Query Frame = 0


Query: 3   PFFLFIFICFAALLSSPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGRTLNTRAFRA 62
           P  +F+    + +L   L+ G   TCSGIVPMK+R++ +SI+DFG VGDG+TLNT+AF +
Sbjct: 7   PISVFVLFLLSTVLPHHLSLGAPITCSGIVPMKHRNEMLSISDFGAVGDGKTLNTKAFNS 66

Query: 63  AIYRIQHLRRRG-GTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEPL 122
           AI RI++      GTLLY+P GVYLT+SFNLTSHMTLYLA  AVIKAVQD+  WP+ +PL
Sbjct: 67  AIDRIRNSNNSNEGTLLYVPRGVYLTQSFNLTSHMTLYLADGAVIKAVQDTEKWPLTDPL 126

Query: 123 PSYGRGREPP 132
           PSYGRGRE P
Sbjct: 127 PSYGRGREHP 136

[Close]

BLAST of Csor.00g041340 vs. TAIR 10
Match: AT3G06770.2 (Pectin lyase-like superfamily protein )

HSP 1 Score: 118.2 bits (295), Expect = 8.3e-27
Identity = 56/110 (50.91%), Postives = 75/110 (68.18%), Query Frame = 0


Query: 22  AGELTTCSGIVPMKYRSDKISIADFGGVGDGRTLNTRAFRAAIYRIQHLRRRGGTLLYIP 81
           AG++    G   +  R   +SI DFG VGDG+TLNT AF+ A++ +     +GG  LY+P
Sbjct: 24  AGKICDELGRRSLSTRPHSVSITDFGAVGDGKTLNTLAFQNAVFYLMSFADKGGAQLYVP 83

Query: 82  PGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEPLPSYGRGREPP 132
           PG +LT SF+LTSH+TL+L   AVI A QD S+W V++PLPSYGRG + P
Sbjct: 84  PGHWLTGSFSLTSHLTLFLENGAVIVASQDPSHWEVVDPLPSYGRGIDLP 133

[Close]

BLAST of Csor.00g041340 vs. TAIR 10
Match: AT3G16850.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 117.1 bits (292), Expect = 1.8e-26
Identity = 62/130 (47.69%), Postives = 79/130 (60.77%), Query Frame = 0


Query: 2   MPFFLFIFICFAALLSSPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGRTLNTRAFR 61
           MP  L   + F  LL S    G    C     +  R   +SI +FG VGDG+TLNT AF+
Sbjct: 3   MPVALVWLLAFTILLIS--GEGNNAICKENFKLDPRPHSVSILEFGAVGDGKTLNTIAFQ 62

Query: 62  AAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEPL 121
            A++ ++    +GG  LY+PPG +LT SFNLTSH+TL+L K A I A  D S+W V+ PL
Sbjct: 63  NAVFYLKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGATILASPDPSHWDVVSPL 122

Query: 122 PSYGRGREPP 132
           PSYGRG E P
Sbjct: 123 PSYGRGIELP 130

[Close]

BLAST of Csor.00g041340 vs. TAIR 10
Match: AT5G49215.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 116.3 bits (290), Expect = 3.2e-26
Identity = 54/95 (56.84%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 37  RSDKISIADFGGVGDGRTLNTRAFRAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHM 96
           R   + I DFG VGDG+TLNT AF+ A++ ++    +GG  LY+PPG +LT SFNLTSH+
Sbjct: 39  RPHSVKITDFGAVGDGKTLNTLAFQNAVFYLKSFADKGGAQLYVPPGRWLTGSFNLTSHL 98

Query: 97  TLYLAKDAVIKAVQDSSNWPVIEPLPSYGRGREPP 132
           TL+L KDAVI A QD S+W V + LPSYGRG + P
Sbjct: 99  TLFLEKDAVILASQDPSHWQVTDALPSYGRGIDLP 133

The following BLAST results are available for this feature:

BLAST of Csor.00g041340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A7PZL3	2.6e-25	46.15	Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 ...	[more]

BLAST of Csor.00g041340 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605568.1	1.23e-164	100.00	putative polygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7035482.1	3.92e-81	99.24	putative polygalacturonase [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022958006.1	1.11e-80	98.47	probable polygalacturonase [Cucurbita moschata]	[more]
XP_023534421.1	8.84e-80	97.71	probable polygalacturonase isoform X1 [Cucurbita pepo subsp. pepo] >XP_023534422...	[more]
XP_022995393.1	2.81e-78	96.18	probable polygalacturonase [Cucurbita maxima]	[more]

BLAST of Csor.00g041340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H0T7	5.37e-81	98.47	probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111459369 PE=3 SV...	[more]
A0A6J1K7T4	1.36e-78	96.18	probable polygalacturonase OS=Cucurbita maxima OX=3661 GN=LOC111490953 PE=3 SV=1	[more]
A0A0A0KK36	2.42e-70	87.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G150430 PE=3 SV=1	[more]
A0A5A7TLS6	1.91e-69	86.26	Putative polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3ATJ9	1.91e-69	86.26	probable polygalacturonase OS=Cucumis melo OX=3656 GN=LOC103482817 PE=3 SV=1	[more]

BLAST of Csor.00g041340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23820.1	1.1e-50	76.19	Pectin lyase-like superfamily protein	[more]
AT5G41870.1	8.5e-40	60.77	Pectin lyase-like superfamily protein	[more]
AT3G06770.2	8.3e-27	50.91	Pectin lyase-like superfamily protein	[more]
AT3G16850.1	1.8e-26	47.69	Pectin lyase-like superfamily protein	[more]
AT5G49215.1	3.2e-26	56.84	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 37..197 e-value: 2.0E-25 score: 91.5
IPR024535	Pectate lyase superfamily protein	PFAM	PF12708	Pectate_lyase_3	coord: 41..113 e-value: 2.7E-7 score: 30.7
None	No IPR available	PANTHER	PTHR31339:SF77	GLYCOSIDE HYDROLASE, FAMILY 28, PECTIN LYASE FOLD/VIRULENCE FACTOR-RELATED	coord: 14..131
None	No IPR available	PANTHER	PTHR31339	PECTIN LYASE-RELATED	coord: 14..131
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 1..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g041340.m01	Csor.00g041340.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity