Csor.00g041210 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g041210
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein ZGRF1 isoform X4
Location	Csor_Chr02: 5740961 .. 5742837 (+)
RNA-Seq Expression	Csor.00g041210
Synteny	Csor.00g041210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAAACGAATCGATGGAAGGTGACCTATACCAAGCATCTCAAGCAGAAACGCAAAGTTTATCACGACGGTTTCTTAGGCATCCACCTCTCCAGCAACAAGGTCTCTCTTTCTTCTATAATTTGTCTTCACTGTACATCTTTTGAATTCCTAGATTTGTTATTCTGCTGAAGAACTTGTCGAATTTCTGAGATTTTGGACTGGAAAGTATGGAGTTATCTAGCATCAGTGGCGTTGAAGCCTAGAATTTGAATTTTCTTATTCTGATTGTTAGACTAGTCGATTTGTTCTAATGATTAGATCGACACACAGATGATGCTCTATGATGAGTGCGCGAAGCTTCTAGAATGCAGGCTCTTAAAGCAAGATGAAGTAATTTACTCCCGCGAAACGCTTATATTCAACCGTTACCTTGTTGACACTGATGCTTCTCAGGGAGATCATAAGCTGGAGTCTGGTCTGAACTTCTAAGCAGGCAATGATAAGATACCTGAAAAATCTGTTGTGTTGCGAGGGAAAAACTTCCGAAATAGCTCTGTTTGCTTTGGTAATTAGTCCCTCCTTGGTTCATTTTTTTTAACTGTCTCCATAATTTATTAGCACGTAATGAAGTTCATTTCTCTAACTGATTGGATTATGATTAATATTATTCTCTGTTTGTGACTTCAAAAATAAAGCAGGTACTCTCAGCCCTTCGCATAAAATAATTAGAGGTAACTTGCATTATTTGGCCAATACACCATGTCTGTTATCGTTTCTCTCCCAATTGCTATTCCAAAGTAGTTTTGGCGATCATGACTTGGGCTATAATTTAAGTCATACTGGTGATTACCATTTACTTCATACGTGCTACTGTCATCATGTGTGTAGCAATGTGCTTTTGAATTAGGTTTCAACACTGTCATTCCGTTTAATTCCAGAATTTAAGAAGAGCAGATTGTGCTATGGATCGCCACAAACTAGCCCAGACACTAGAATAACAGAGGAGACAGGTTAGTTCATGTTCATGACTTGTTTTGGTTGGTTGGTAAAAACATCTTTTTCCTCTTGGAATCCTTAAGTGTCAAACAAAAAAAGTTGTGAACCTCGAATACGTAGTCATAGTGACTCAGGTATTGAACAAATGATATACTTTGTTCGAGGACTCTAGAGAAAGAGGCTTCAGGGGAGGCTCTATGGTGTACTTTGTTTGAGGGGATGATTGTTGGAGTCCCACGTTAGCTAATTAAAAGATGAATATAAGTGAGAGACACTATCTCCCTGAAGTTTTTTTTGAAGAAATCAAAAGAAAAACCAAAGTCACGAGAGTTTATGCTCAAAGTAGACAATATCATACCAACATGGAGTTACTTCTTCCTAACAAATTTATCTCTCATAAAAAAAGGGCGTGCTACAAGAACTTACAAATATTTATGATACTTAGGGAAGGAAGATCTAGCTTTTTGAGCCATACAAAAGAAAAAATGCGAGGACTTATTTGGAAAAAAGATTTGACACGAATTAGAAACAAGTGCATTTTGCAATATAGTGGGAAATTGTATAGCCAGAAAATACAAACTATGCCTTTGACCGAGAAGATGATGCTTTCTGGAGATTGAATTTGAAAAGATCAGCATGCAAAGTTCCATGGAGTAGAATTGTTCTAGTTTCTCGATCCTTTCGTTACACAAATATTTGGATGAAATATAAAAAACATTATTATCTATCAATTAAGTTATATTTAAGAAGATTTTCTGTGGTTTGTGGATTGTGAAGAAGATTCTGAAGTTTGCAAATATGGGAAGAGAATGAAGAGGAAACAAAGCATCGAGTCATATAAAGACCAGCTCAATTGCCTTGCCAATATGGACCAATTCTATCTGAAGTATTTGTAG

mRNA sequence

ATGGGAGAAACGAATCGATGGAAGGTGACCTATACCAAGCATCTCAAGCAGAAACGCAAAGTTTATCACGACGGTTTCTTAGGCATCCACCTCTCCAGCAACAAGATCGACACACAGATGATGCTCTATGATGAGTGCGCGAAGCTTCTAGAATGCAGGCTCTTAAAGCAAGATGAAGTAATTTACTCCCGCGAAACGCTTATATTCAACCGTTACCTTGTTGACACTGATGCTTCTCAGGGAGATCATAAGCTGGAGTCTGAATTTAAGAAGAGCAGATTGTGCTATGGATCGCCACAAACTAGCCCAGACACTAGAATAACAGAGGAGACAGAAGATTCTGAAGTTTGCAAATATGGGAAGAGAATGAAGAGGAAACAAAGCATCGAGTCATATAAAGACCAGCTCAATTGCCTTGCCAATATGGACCAATTCTATCTGAAGTATTTGTAG

Coding sequence (CDS)

ATGGGAGAAACGAATCGATGGAAGGTGACCTATACCAAGCATCTCAAGCAGAAACGCAAAGTTTATCACGACGGTTTCTTAGGCATCCACCTCTCCAGCAACAAGATCGACACACAGATGATGCTCTATGATGAGTGCGCGAAGCTTCTAGAATGCAGGCTCTTAAAGCAAGATGAAGTAATTTACTCCCGCGAAACGCTTATATTCAACCGTTACCTTGTTGACACTGATGCTTCTCAGGGAGATCATAAGCTGGAGTCTGAATTTAAGAAGAGCAGATTGTGCTATGGATCGCCACAAACTAGCCCAGACACTAGAATAACAGAGGAGACAGAAGATTCTGAAGTTTGCAAATATGGGAAGAGAATGAAGAGGAAACAAAGCATCGAGTCATATAAAGACCAGCTCAATTGCCTTGCCAATATGGACCAATTCTATCTGAAGTATTTGTAG

Protein sequence

MGETNRWKVTYTKHLKQKRKVYHDGFLGIHLSSNKIDTQMMLYDECAKLLECRLLKQDEVIYSRETLIFNRYLVDTDASQGDHKLESEFKKSRLCYGSPQTSPDTRITEETEDSEVCKYGKRMKRKQSIESYKDQLNCLANMDQFYLKYL

Homology

[Close]

BLAST of Csor.00g041210 vs. NCBI nr
Match: KAG6605581.1 (hypothetical protein SDJN03_02898, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 310 bits (794), Expect = 1.40e-106
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MGETNRWKVTYTKHLKQKRKVYHDGFLGIHLSSNKIDTQMMLYDECAKLLECRLLKQDEV 60
           MGETNRWKVTYTKHLKQKRKVYHDGFLGIHLSSNKIDTQMMLYDECAKLLECRLLKQDEV
Sbjct: 1   MGETNRWKVTYTKHLKQKRKVYHDGFLGIHLSSNKIDTQMMLYDECAKLLECRLLKQDEV 60

Query: 61  IYSRETLIFNRYLVDTDASQGDHKLESEFKKSRLCYGSPQTSPDTRITEETEDSEVCKYG 120
           IYSRETLIFNRYLVDTDASQGDHKLESEFKKSRLCYGSPQTSPDTRITEETEDSEVCKYG
Sbjct: 61  IYSRETLIFNRYLVDTDASQGDHKLESEFKKSRLCYGSPQTSPDTRITEETEDSEVCKYG 120

Query: 121 KRMKRKQSIESYKDQLNCLANMDQFYLKYL 150
           KRMKRKQSIESYKDQLNCLANMDQFYLKYL
Sbjct: 121 KRMKRKQSIESYKDQLNCLANMDQFYLKYL 150

[Close]

BLAST of Csor.00g041210 vs. NCBI nr
Match: XP_022145926.1 (uncharacterized protein LOC111015274 isoform X2 [Momordica charantia])

HSP 1 Score: 155 bits (391), Expect = 2.61e-41
Identity = 91/163 (55.83%), Postives = 95/163 (58.28%), Query Frame = 0


Query: 1   MGETNRWKVTYTKHLKQKRKVYHDGFLGIHLSSNKIDTQMMLYDECAKLLECRLLKQDEV 60
           MGE NRWKVT+TKHLKQKRKVYHDGFL IH S+NK     +LYDEC KLLECRLLKQDEV
Sbjct: 1   MGEVNRWKVTFTKHLKQKRKVYHDGFLDIHRSTNKA----LLYDECEKLLECRLLKQDEV 60

Query: 61  IYSRETLIFNRYLVDTDASQGDHKLES--------------------------------- 112
           I S ETLIFN YLVD D  QGDHK ES                                 
Sbjct: 61  ICSGETLIFNSYLVDIDTPQGDHKPESGLNTQAGDDEISEKPGVLPGKNFRKNSGCFASA 120

[Close]

BLAST of Csor.00g041210 vs. NCBI nr
Match: XP_022145925.1 (uncharacterized protein LOC111015274 isoform X1 [Momordica charantia])

HSP 1 Score: 155 bits (391), Expect = 2.65e-41
Identity = 91/163 (55.83%), Postives = 95/163 (58.28%), Query Frame = 0


Query: 1   MGETNRWKVTYTKHLKQKRKVYHDGFLGIHLSSNKIDTQMMLYDECAKLLECRLLKQDEV 60
           MGE NRWKVT+TKHLKQKRKVYHDGFL IH S+NK     +LYDEC KLLECRLLKQDEV
Sbjct: 1   MGEVNRWKVTFTKHLKQKRKVYHDGFLDIHRSTNKA----LLYDECEKLLECRLLKQDEV 60

Query: 61  IYSRETLIFNRYLVDTDASQGDHKLES--------------------------------- 112
           I S ETLIFN YLVD D  QGDHK ES                                 
Sbjct: 61  ICSGETLIFNSYLVDIDTPQGDHKPESGLNTQAGDDEISEKPGVLPGKNFRKNSGCFASA 120

[Close]

BLAST of Csor.00g041210 vs. NCBI nr
Match: XP_038874790.1 (uncharacterized protein LOC120067307 isoform X4 [Benincasa hispida])

HSP 1 Score: 152 bits (385), Expect = 1.47e-40
Identity = 91/163 (55.83%), Postives = 93/163 (57.06%), Query Frame = 0


Query: 1   MGETNRWKVTYTKHLKQKRKVYHDGFLGIHLSSNKIDTQMMLYDECAKLLECRLLKQDEV 60
           MGE NRWKVTYTKHLKQKRKVYHDGFL IH SSNK     MLYDEC KLLECR+LKQDEV
Sbjct: 1   MGEMNRWKVTYTKHLKQKRKVYHDGFLDIHRSSNKT----MLYDECEKLLECRILKQDEV 60

Query: 61  IYSRETLIFNRYLVDTDASQGDHKLES--------------------------------- 112
           I S ETLIFN YLVD D   GDHK ES                                 
Sbjct: 61  IGSGETLIFNSYLVDIDTPLGDHKPESDLNFQPGDDKISEKSGVLRGKNFRNNSVSFAST 120

[Close]

BLAST of Csor.00g041210 vs. NCBI nr
Match: XP_038874789.1 (uncharacterized protein LOC120067307 isoform X3 [Benincasa hispida])

HSP 1 Score: 152 bits (385), Expect = 1.91e-40
Identity = 91/163 (55.83%), Postives = 93/163 (57.06%), Query Frame = 0


Query: 1   MGETNRWKVTYTKHLKQKRKVYHDGFLGIHLSSNKIDTQMMLYDECAKLLECRLLKQDEV 60
           MGE NRWKVTYTKHLKQKRKVYHDGFL IH SSNK     MLYDEC KLLECR+LKQDEV
Sbjct: 1   MGEMNRWKVTYTKHLKQKRKVYHDGFLDIHRSSNKT----MLYDECEKLLECRILKQDEV 60

Query: 61  IYSRETLIFNRYLVDTDASQGDHKLES--------------------------------- 112
           I S ETLIFN YLVD D   GDHK ES                                 
Sbjct: 61  IGSGETLIFNSYLVDIDTPLGDHKPESDLNFQPGDDKISEKSGVLRGKNFRNNSVSFAST 120

[Close]

BLAST of Csor.00g041210 vs. ExPASy TrEMBL
Match: A0A6J1CXU9 (uncharacterized protein LOC111015274 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111015274 PE=4 SV=1)

HSP 1 Score: 155 bits (391), Expect = 1.27e-41
Identity = 91/163 (55.83%), Postives = 95/163 (58.28%), Query Frame = 0


Query: 1   MGETNRWKVTYTKHLKQKRKVYHDGFLGIHLSSNKIDTQMMLYDECAKLLECRLLKQDEV 60
           MGE NRWKVT+TKHLKQKRKVYHDGFL IH S+NK     +LYDEC KLLECRLLKQDEV
Sbjct: 1   MGEVNRWKVTFTKHLKQKRKVYHDGFLDIHRSTNKA----LLYDECEKLLECRLLKQDEV 60

Query: 61  IYSRETLIFNRYLVDTDASQGDHKLES--------------------------------- 112
           I S ETLIFN YLVD D  QGDHK ES                                 
Sbjct: 61  ICSGETLIFNSYLVDIDTPQGDHKPESGLNTQAGDDEISEKPGVLPGKNFRKNSGCFASA 120

[Close]

BLAST of Csor.00g041210 vs. ExPASy TrEMBL
Match: A0A6J1CVV0 (uncharacterized protein LOC111015274 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111015274 PE=4 SV=1)

HSP 1 Score: 155 bits (391), Expect = 1.28e-41
Identity = 91/163 (55.83%), Postives = 95/163 (58.28%), Query Frame = 0


Query: 1   MGETNRWKVTYTKHLKQKRKVYHDGFLGIHLSSNKIDTQMMLYDECAKLLECRLLKQDEV 60
           MGE NRWKVT+TKHLKQKRKVYHDGFL IH S+NK     +LYDEC KLLECRLLKQDEV
Sbjct: 1   MGEVNRWKVTFTKHLKQKRKVYHDGFLDIHRSTNKA----LLYDECEKLLECRLLKQDEV 60

Query: 61  IYSRETLIFNRYLVDTDASQGDHKLES--------------------------------- 112
           I S ETLIFN YLVD D  QGDHK ES                                 
Sbjct: 61  ICSGETLIFNSYLVDIDTPQGDHKPESGLNTQAGDDEISEKPGVLPGKNFRKNSGCFASA 120

[Close]

BLAST of Csor.00g041210 vs. ExPASy TrEMBL
Match: A0A6J1EL85 (uncharacterized protein LOC111435594 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111435594 PE=4 SV=1)

HSP 1 Score: 148 bits (373), Expect = 4.66e-39
Identity = 87/166 (52.41%), Postives = 93/166 (56.02%), Query Frame = 0


Query: 1   MGETNRWKVTYTKHLKQKRKVYHDGFLGIHLSSNKIDTQMMLYDECAKLLECRLLKQDEV 60
           M E NRWKVTYTKHLKQ+RKVYHDGFL +H SSNK     MLYDEC KLLECR+LKQ+EV
Sbjct: 1   MAEMNRWKVTYTKHLKQRRKVYHDGFLDVHRSSNKT----MLYDECEKLLECRILKQEEV 60

Query: 61  IYSRETLIFNRYLVDTDASQGDHKLES--------------------------------- 112
           + S ETLIFN YLVD D   GDHK ES                                 
Sbjct: 61  VCSGETLIFNSYLVDIDTPLGDHKPESGLNFQAGHDKIPEKSGVLRGKNFRNNSVCFENK 120

[Close]

BLAST of Csor.00g041210 vs. ExPASy TrEMBL
Match: A0A6J1ESH9 (uncharacterized protein LOC111435594 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435594 PE=4 SV=1)

HSP 1 Score: 148 bits (373), Expect = 4.77e-39
Identity = 87/166 (52.41%), Postives = 93/166 (56.02%), Query Frame = 0


Query: 1   MGETNRWKVTYTKHLKQKRKVYHDGFLGIHLSSNKIDTQMMLYDECAKLLECRLLKQDEV 60
           M E NRWKVTYTKHLKQ+RKVYHDGFL +H SSNK     MLYDEC KLLECR+LKQ+EV
Sbjct: 1   MAEMNRWKVTYTKHLKQRRKVYHDGFLDVHRSSNKT----MLYDECEKLLECRILKQEEV 60

Query: 61  IYSRETLIFNRYLVDTDASQGDHKLES--------------------------------- 112
           + S ETLIFN YLVD D   GDHK ES                                 
Sbjct: 61  VCSGETLIFNSYLVDIDTPLGDHKPESGLNFQAGHDKIPEKSGVLRGKNFRNNSVCFENK 120

[Close]

BLAST of Csor.00g041210 vs. ExPASy TrEMBL
Match: A0A6J1EQ22 (uncharacterized protein LOC111435594 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435594 PE=4 SV=1)

HSP 1 Score: 148 bits (373), Expect = 4.82e-39
Identity = 87/166 (52.41%), Postives = 93/166 (56.02%), Query Frame = 0


Query: 1   MGETNRWKVTYTKHLKQKRKVYHDGFLGIHLSSNKIDTQMMLYDECAKLLECRLLKQDEV 60
           M E NRWKVTYTKHLKQ+RKVYHDGFL +H SSNK     MLYDEC KLLECR+LKQ+EV
Sbjct: 1   MAEMNRWKVTYTKHLKQRRKVYHDGFLDVHRSSNKT----MLYDECEKLLECRILKQEEV 60

Query: 61  IYSRETLIFNRYLVDTDASQGDHKLES--------------------------------- 112
           + S ETLIFN YLVD D   GDHK ES                                 
Sbjct: 61  VCSGETLIFNSYLVDIDTPLGDHKPESGLNFQAGHDKIPEKSGVLRGKNFRNNSVCFENK 120

[Close]

BLAST of Csor.00g041210 vs. TAIR 10
Match: AT4G10890.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439 (InterPro:IPR018838); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-17
Identity = 48/90 (53.33%), Postives = 55/90 (61.11%), Query Frame = 0


Query: 1   MGETNRWKVTYTKHLKQKRKVYHDGFLGIHLSSNKIDTQMMLYDECAKLLECRLLKQDEV 60
           M E  RW   YTKHLKQKRKVYHDGFL +H++  K+    MLYDE   LLE R LK  EV
Sbjct: 241 MAEKQRWIAMYTKHLKQKRKVYHDGFLDLHIARKKV----MLYDEDDNLLESRTLKACEV 300

Query: 61  IYSRETLIFNRYLVDTDASQGDHKLESEFK 91
           + + ETL F  YLVD    +   K  SE K
Sbjct: 301 VNTGETLTFQAYLVDICDPKDGSKASSEPK 326

The following BLAST results are available for this feature:

BLAST of Csor.00g041210 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g041210 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605581.1	1.40e-106	100.00	hypothetical protein SDJN03_02898, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022145926.1	2.61e-41	55.83	uncharacterized protein LOC111015274 isoform X2 [Momordica charantia]	[more]
XP_022145925.1	2.65e-41	55.83	uncharacterized protein LOC111015274 isoform X1 [Momordica charantia]	[more]
XP_038874790.1	1.47e-40	55.83	uncharacterized protein LOC120067307 isoform X4 [Benincasa hispida]	[more]
XP_038874789.1	1.91e-40	55.83	uncharacterized protein LOC120067307 isoform X3 [Benincasa hispida]	[more]

BLAST of Csor.00g041210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CXU9	1.27e-41	55.83	uncharacterized protein LOC111015274 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CVV0	1.28e-41	55.83	uncharacterized protein LOC111015274 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1EL85	4.66e-39	52.41	uncharacterized protein LOC111435594 isoform X3 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1ESH9	4.77e-39	52.41	uncharacterized protein LOC111435594 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1EQ22	4.82e-39	52.41	uncharacterized protein LOC111435594 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Csor.00g041210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10890.1	1.4e-17	53.33	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018838	Domain of unknown function DUF2439	PFAM	PF10382	DUF2439	coord: 6..78 e-value: 4.8E-13 score: 49.2
None	No IPR available	PANTHER	PTHR28535	ZINC FINGER GRF-TYPE CONTAINING 1	coord: 1..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g041210.m01	Csor.00g041210.m01	mRNA