Csor.00g040330 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g040330
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	rRNA processing protein-related
Location	Csor_Chr02: 6272162 .. 6272734 (-)
RNA-Seq Expression	Csor.00g040330
Synteny	Csor.00g040330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCTTGAGAAGTTCCAATCTTTAGGACTTCCTTTTCTCAGGCCACCAGACTATTATGCAGAGATGGTGAAGACGGATACCCACATGGTAAAAGTGAAAGGCCGGTTGCTAATGGAACAGAAAAAGATGGAGGAGGCCGAGGAAAGAAGGAAGGCGAGAGAAGCGAAGAAATTAGCTAAAGAGATTCAAGCTCAGAAGCTAAAGGAGAGGGCTAAACAAAAGAAAGAGGAGATTGAGTCTGTTAAGAAATGGAGGAAGCAGAGGCAGAAGAGTGGTTTTTCTGATAAAGGCGGTGAGATGGACTTATCGTTTGAAGACGGGAAGGCGTTTAATAAGTCTGGTGGTAAGAAGAGGCCAGGGGTGTCTCCCGGCGATCGCTCCGGAGGGAAGGCAAGACATGGTGGAGGTGGAAAAGGGAAAAATCCGAAGAAAAGAGATTTTAGAGATTCGAAGTTCGGATTCGGCGGGAGGAAAAGTATGAAAAAACAAAACACAGCTGAGACAACAAATGATATTAGGGGATTCAACAATGGCAGTTTGTCAAGCAATAAAAGAAGGAAGAAGTCATAG

mRNA sequence

ATGGCCCTTGAGAAGTTCCAATCTTTAGGACTTCCTTTTCTCAGGCCACCAGACTATTATGCAGAGATGGTGAAGACGGATACCCACATGGTAAAAGTGAAAGGCCGGTTGCTAATGGAACAGAAAAAGATGGAGGAGGCCGAGGAAAGAAGGAAGGCGAGAGAAGCGAAGAAATTAGCTAAAGAGATTCAAGCTCAGAAGCTAAAGGAGAGGGCTAAACAAAAGAAAGAGGAGATTGAGTCTGTTAAGAAATGGAGGAAGCAGAGGCAGAAGAGTGGTTTTTCTGATAAAGGCGGTGAGATGGACTTATCGTTTGAAGACGGGAAGGCGTTTAATAAGTCTGGTGGTAAGAAGAGGCCAGGGGTGTCTCCCGGCGATCGCTCCGGAGGGAAGGCAAGACATGGTGGAGGTGGAAAAGGGAAAAATCCGAAGAAAAGAGATTTTAGAGATTCGAAGTTCGGATTCGGCGGGAGGAAAAGTATGAAAAAACAAAACACAGCTGAGACAACAAATGATATTAGGGGATTCAACAATGGCAGTTTGTCAAGCAATAAAAGAAGGAAGAAGTCATAG

Coding sequence (CDS)

ATGGCCCTTGAGAAGTTCCAATCTTTAGGACTTCCTTTTCTCAGGCCACCAGACTATTATGCAGAGATGGTGAAGACGGATACCCACATGGTAAAAGTGAAAGGCCGGTTGCTAATGGAACAGAAAAAGATGGAGGAGGCCGAGGAAAGAAGGAAGGCGAGAGAAGCGAAGAAATTAGCTAAAGAGATTCAAGCTCAGAAGCTAAAGGAGAGGGCTAAACAAAAGAAAGAGGAGATTGAGTCTGTTAAGAAATGGAGGAAGCAGAGGCAGAAGAGTGGTTTTTCTGATAAAGGCGGTGAGATGGACTTATCGTTTGAAGACGGGAAGGCGTTTAATAAGTCTGGTGGTAAGAAGAGGCCAGGGGTGTCTCCCGGCGATCGCTCCGGAGGGAAGGCAAGACATGGTGGAGGTGGAAAAGGGAAAAATCCGAAGAAAAGAGATTTTAGAGATTCGAAGTTCGGATTCGGCGGGAGGAAAAGTATGAAAAAACAAAACACAGCTGAGACAACAAATGATATTAGGGGATTCAACAATGGCAGTTTGTCAAGCAATAAAAGAAGGAAGAAGTCATAG

Protein sequence

MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDLSFEDGKAFNKSGGKKRPGVSPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGSLSSNKRRKKS

Homology

[Close]

BLAST of Csor.00g040330 vs. ExPASy Swiss-Prot
Match: Q9LUJ5 (Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana OX=3702 GN=EBP2 PE=1 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-54
Identity = 124/189 (65.61%), Postives = 149/189 (78.84%), Query Frame = 0


Query: 2   ALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLAK 61
           A  K   +G+ FLRP +YYAEMVK+D HM KVK RLL E+K++EE+EERRKAR+ K++AK
Sbjct: 108 AFGKLNEMGVNFLRPANYYAEMVKSDVHMEKVKSRLLHEKKQIEESEERRKARDNKRMAK 167

Query: 62  EIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDLSFEDGKAFNKSGGKKRPG 121
           E+Q+QK+KERAK+KK+ IESVKKWRKQRQ+SGFSDK GE +L FE GK+F + GGKKRPG
Sbjct: 168 EVQSQKMKERAKEKKDNIESVKKWRKQRQQSGFSDKAGEPELDFESGKSFQRGGGKKRPG 227

Query: 122 VSPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIR-GFNNGS 181
           VSPGDRSGGK R          KKR+FRDSKFG GGRK + KQNTAETTND + GF  G 
Sbjct: 228 VSPGDRSGGKGR---PTSRMGNKKREFRDSKFGHGGRKGLSKQNTAETTNDFKGGFRGGK 287

Query: 182 LSSNKRRKK 190
            S NKR+K+
Sbjct: 288 ASGNKRQKR 293

[Close]

BLAST of Csor.00g040330 vs. ExPASy Swiss-Prot
Match: Q9I8J6 (Probable rRNA-processing protein EBP2 OS=Xenopus laevis OX=8355 GN=ebna1bp2 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.3e-13
Identity = 65/184 (35.33%), Postives = 101/184 (54.89%), Query Frame = 0


Query: 2   ALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLAK 61
           +L + + L +   RP DY+AEM KTD HM K++ +L ++Q  ME++E+ ++ R  +K  K
Sbjct: 120 SLPRLRKLKVATKRPDDYFAEMAKTDQHMQKIRHKLQLKQASMEKSEKAKQLRALRKYGK 179

Query: 62  EIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDLSFEDGKAFNKSGGKKRPG 121
           ++Q + L++R K+K   +  +KK++K     G SDK     L F +G        KK P 
Sbjct: 180 KVQVEVLQKRQKEKSAMVTQIKKYQK-----GLSDK-----LDFLEG----DQTPKKTPN 239

Query: 122 VSPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGSL 181
            + G  +  KA      K     KR ++D KFGFGG+K   K NT  + ND+ GF  GS+
Sbjct: 240 KTGGSAAAQKA------KNTPSAKRRYKDQKFGFGGKKKGSKGNTKGSYNDVSGF-RGSV 282

Query: 182 SSNK 186
           +  K
Sbjct: 300 AHGK 282

[Close]

BLAST of Csor.00g040330 vs. ExPASy Swiss-Prot
Match: Q09958 (Probable rRNA-processing protein EBP2 homolog OS=Caenorhabditis elegans OX=6239 GN=C18A3.3 PE=1 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 3.6e-12
Identity = 67/193 (34.72%), Postives = 97/193 (50.26%), Query Frame = 0


Query: 1   MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLA 60
           +A  +  +LG+  LRP DYYAEM K+DTHM KV+ RLL  Q+  E  E  R+ RE KK A
Sbjct: 143 IAYPRLLNLGIKVLRPTDYYAEMAKSDTHMQKVRKRLLGIQEMKERQEAFRRIREEKKFA 202

Query: 61  KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDLSFEDGKAFNKSGGKKRP 120
            ++Q + L  +  +KK   E+VKK +K  ++        +++    + K          P
Sbjct: 203 VKVQKEVLAAKNTEKKNLAEAVKKHKKGMKQ--------QLEDMLNNVKRHGLDQDDDAP 262

Query: 121 GVSPGDRSGGKARHGGGGKGKNPK-------KRDFRDSKFGFGGRKSMKKQNTAETTNDI 180
             + GDR GG+   G GG G+          KR  +  KFG+GG+K   K+N  E+ ND+
Sbjct: 263 TGAFGDRLGGRGGAGRGGAGRGGSMRNAGELKRKLKSDKFGYGGKKKGMKRNNKESFNDL 322

Query: 181 RGFNNGSLSSNKR 187
            G   G      R
Sbjct: 323 FGAPRGGFGGRGR 327

[Close]

BLAST of Csor.00g040330 vs. ExPASy Swiss-Prot
Match: Q9D903 (Probable rRNA-processing protein EBP2 OS=Mus musculus OX=10090 GN=Ebna1bp2 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.2e-12
Identity = 59/174 (33.91%), Postives = 98/174 (56.32%), Query Frame = 0


Query: 3   LEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLAKE 62
           L +   L +P  RP DY+AEM K+D  M K++ +L  +Q  ME++E+ ++ R  +K  K+
Sbjct: 120 LPRLHQLQVPTKRPTDYFAEMAKSDQQMQKIRQKLQTKQAAMEKSEKAKQLRALRKYGKK 179

Query: 63  IQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDLSFEDGKAFNKSGGKKRPGV 122
           +Q + L++R ++K   + ++KK++K     GFSDK   +D    D K   +S        
Sbjct: 180 VQTEVLQKRQREKAHMMNAIKKYQK-----GFSDK---LDFLEGDQKPVERSA------- 239

Query: 123 SPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGF 177
               ++GGK +     KG N K+R +++ KFGFGG+K   K NT E+ +D+  F
Sbjct: 240 ----KAGGKGQQ--MSKGPNAKRR-YKNQKFGFGGKKKGSKWNTKESYDDVSSF 271

[Close]

BLAST of Csor.00g040330 vs. ExPASy Swiss-Prot
Match: P36049 (rRNA-processing protein EBP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=EBP2 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.2e-11
Identity = 55/188 (29.26%), Postives = 98/188 (52.13%), Query Frame = 0


Query: 1   MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLA 60
           +A ++ + L +PF RP DY+AEMVK+D HM K+KG+L+ E    +  EE R+ R+ KK  
Sbjct: 256 VARDELKRLKVPFKRPLDYFAEMVKSDEHMDKIKGKLIEEASDKKAREEARRQRQLKKFG 315

Query: 61  KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDLSFE-DGKAFNKSGGKKR 120
           K++Q   L++R  +K+E +E +K  + +R+ +        + +  E +GK F+       
Sbjct: 316 KQVQNATLQKRQLEKRETLEKIKSLKNKRKHNEIDHSEFNVGVEEEVEGKRFD------- 375

Query: 121 PGVSPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNG 180
                              +G+   KR  +++K+G GG K  K++N A ++ D+ GF++ 
Sbjct: 376 -------------------RGRPNGKRAAKNAKYGQGGMKRFKRKNDATSSADVSGFSSR 417

Query: 181 SLSSNKRR 188
            +     R
Sbjct: 436 KMKGKTNR 417

[Close]

BLAST of Csor.00g040330 vs. NCBI nr
Match: KAG6605669.1 (putative rRNA-processing protein EBP2-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 344 bits (882), Expect = 1.10e-118
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLA 60
           MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLA
Sbjct: 1   MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLA 60

Query: 61  KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDLSFEDGKAFNKSGGKKRP 120
           KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDLSFEDGKAFNKSGGKKRP
Sbjct: 61  KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDLSFEDGKAFNKSGGKKRP 120

Query: 121 GVSPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGS 180
           GVSPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGS
Sbjct: 121 GVSPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGS 180

Query: 181 LSSNKRRKKS 190
           LSSNKRRKKS
Sbjct: 181 LSSNKRRKKS 190

[Close]

BLAST of Csor.00g040330 vs. NCBI nr
Match: XP_023534524.1 (probable rRNA-processing protein EBP2 homolog [Cucurbita pepo subsp. pepo] >XP_023534525.1 probable rRNA-processing protein EBP2 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 341 bits (874), Expect = 7.30e-116
Identity = 188/190 (98.95%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLA 60
           MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLA
Sbjct: 107 MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLA 166

Query: 61  KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDLSFEDGKAFNKSGGKKRP 120
           KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDLSFEDGKAF++SGGKKRP
Sbjct: 167 KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDLSFEDGKAFDRSGGKKRP 226

Query: 121 GVSPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGS 180
           GVSPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGS
Sbjct: 227 GVSPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGS 286

Query: 181 LSSNKRRKKS 190
           LSSNKRRKKS
Sbjct: 287 LSSNKRRKKS 296

[Close]

BLAST of Csor.00g040330 vs. NCBI nr
Match: XP_022958567.1 (probable rRNA-processing protein EBP2 homolog [Cucurbita moschata] >XP_022958569.1 probable rRNA-processing protein EBP2 homolog [Cucurbita moschata])

HSP 1 Score: 341 bits (874), Expect = 7.81e-116
Identity = 188/190 (98.95%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLA 60
           MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLA
Sbjct: 109 MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLA 168

Query: 61  KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDLSFEDGKAFNKSGGKKRP 120
           KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDLSFEDGKAF++SGGKKRP
Sbjct: 169 KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDLSFEDGKAFDRSGGKKRP 228

Query: 121 GVSPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGS 180
           GVSPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGS
Sbjct: 229 GVSPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGS 288

Query: 181 LSSNKRRKKS 190
           LSSNKRRKKS
Sbjct: 289 LSSNKRRKKS 298

[Close]

BLAST of Csor.00g040330 vs. NCBI nr
Match: KAG7035578.1 (putative rRNA-processing protein EBP2-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 341 bits (874), Expect = 7.81e-116
Identity = 188/190 (98.95%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLA 60
           MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLA
Sbjct: 109 MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLA 168

Query: 61  KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDLSFEDGKAFNKSGGKKRP 120
           KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDLSFEDGKAF++SGGKKRP
Sbjct: 169 KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDLSFEDGKAFDRSGGKKRP 228

Query: 121 GVSPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGS 180
           GVSPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGS
Sbjct: 229 GVSPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGS 288

Query: 181 LSSNKRRKKS 190
           LSSNKRRKKS
Sbjct: 289 LSSNKRRKKS 298

[Close]

BLAST of Csor.00g040330 vs. NCBI nr
Match: XP_022995363.1 (probable rRNA-processing protein EBP2 homolog [Cucurbita maxima] >XP_022995364.1 probable rRNA-processing protein EBP2 homolog [Cucurbita maxima])

HSP 1 Score: 338 bits (868), Expect = 5.97e-115
Identity = 187/190 (98.42%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 1   MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLA 60
           MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLA
Sbjct: 107 MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLA 166

Query: 61  KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDLSFEDGKAFNKSGGKKRP 120
           KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDL FEDGKAF++SGGKKRP
Sbjct: 167 KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDLLFEDGKAFDRSGGKKRP 226

Query: 121 GVSPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGS 180
           GVSPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGS
Sbjct: 227 GVSPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGS 286

Query: 181 LSSNKRRKKS 190
           LSSNKRRKKS
Sbjct: 287 LSSNKRRKKS 296

[Close]

BLAST of Csor.00g040330 vs. ExPASy TrEMBL
Match: A0A6J1H264 (probable rRNA-processing protein EBP2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111459763 PE=3 SV=1)

HSP 1 Score: 341 bits (874), Expect = 3.78e-116
Identity = 188/190 (98.95%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLA 60
           MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLA
Sbjct: 109 MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLA 168

Query: 61  KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDLSFEDGKAFNKSGGKKRP 120
           KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDLSFEDGKAF++SGGKKRP
Sbjct: 169 KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDLSFEDGKAFDRSGGKKRP 228

Query: 121 GVSPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGS 180
           GVSPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGS
Sbjct: 229 GVSPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGS 288

Query: 181 LSSNKRRKKS 190
           LSSNKRRKKS
Sbjct: 289 LSSNKRRKKS 298

[Close]

BLAST of Csor.00g040330 vs. ExPASy TrEMBL
Match: A0A6J1K7Q8 (probable rRNA-processing protein EBP2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111490936 PE=3 SV=1)

HSP 1 Score: 338 bits (868), Expect = 2.89e-115
Identity = 187/190 (98.42%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 1   MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLA 60
           MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLA
Sbjct: 107 MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLA 166

Query: 61  KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDLSFEDGKAFNKSGGKKRP 120
           KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDL FEDGKAF++SGGKKRP
Sbjct: 167 KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDLLFEDGKAFDRSGGKKRP 226

Query: 121 GVSPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGS 180
           GVSPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGS
Sbjct: 227 GVSPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGS 286

Query: 181 LSSNKRRKKS 190
           LSSNKRRKKS
Sbjct: 287 LSSNKRRKKS 296

[Close]

BLAST of Csor.00g040330 vs. ExPASy TrEMBL
Match: A0A6J1IZU9 (probable rRNA-processing protein EBP2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111480644 PE=3 SV=1)

HSP 1 Score: 302 bits (773), Expect = 9.19e-101
Identity = 174/193 (90.16%), Postives = 181/193 (93.78%), Query Frame = 0


Query: 1   MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLA 60
           MALEKFQSLGLPFLRP DYYAEMVKTDTHM KVKGRLL EQ+KMEEAEERRKAREAKKLA
Sbjct: 108 MALEKFQSLGLPFLRPSDYYAEMVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLA 167

Query: 61  KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFS--DKGGEMDLSFEDGKAFNKSGGKK 120
           KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGF+  DKGGEM+LSFEDGKAF +SGGKK
Sbjct: 168 KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFAGGDKGGEMELSFEDGKAFERSGGKK 227

Query: 121 RPGVSPGDRSGGKARHGGGGKGKN-PKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFN 180
           RPGVSPGDRSGGKARH  GGKGKN  KK+DFRDSKFGFGGRKS+KKQNTAETTNDIRGFN
Sbjct: 228 RPGVSPGDRSGGKARHRNGGKGKNLKKKKDFRDSKFGFGGRKSLKKQNTAETTNDIRGFN 287

Query: 181 NGSLSSNKRRKKS 190
           N SL SNKRRK+S
Sbjct: 288 NDSLLSNKRRKRS 300

[Close]

BLAST of Csor.00g040330 vs. ExPASy TrEMBL
Match: A0A1S3CT69 (probable rRNA-processing protein EBP2 homolog OS=Cucumis melo OX=3656 GN=LOC103504670 PE=3 SV=1)

HSP 1 Score: 300 bits (769), Expect = 4.70e-100
Identity = 174/195 (89.23%), Postives = 181/195 (92.82%), Query Frame = 0


Query: 1   MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLA 60
           MALEKFQSLGLPFLRP DYYAEMVKTDTHM KVKGRLL EQ+KMEEAEERRKAREAKKLA
Sbjct: 112 MALEKFQSLGLPFLRPSDYYAEMVKTDTHMQKVKGRLLSEQRKMEEAEERRKAREAKKLA 171

Query: 61  KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFS--DKGGEMDLSFEDGKAFNKSGGKK 120
           KEIQAQK KERAKQKKEEIESVKKWRKQRQK+ F+  DKGG+MD SFEDGK F +SGGKK
Sbjct: 172 KEIQAQKQKERAKQKKEEIESVKKWRKQRQKNNFAGGDKGGDMDFSFEDGKTFERSGGKK 231

Query: 121 RPGVSPGDRSGGKARHGGGG--KGKN-PKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRG 180
           RPGVSPGDRSGGKARHGGGG  KGKN  KKRDFRDSKFGFGGRKS+KKQNTAETTNDIRG
Sbjct: 232 RPGVSPGDRSGGKARHGGGGGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRG 291

Query: 181 FNNGSLSSNKRRKKS 190
           FNNGSLS+NKRRKKS
Sbjct: 292 FNNGSLSNNKRRKKS 306

[Close]

BLAST of Csor.00g040330 vs. ExPASy TrEMBL
Match: A0A5D3DB33 (Putative rRNA-processing protein EBP2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001370 PE=3 SV=1)

HSP 1 Score: 300 bits (769), Expect = 6.31e-100
Identity = 174/195 (89.23%), Postives = 181/195 (92.82%), Query Frame = 0


Query: 1   MALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLA 60
           MALEKFQSLGLPFLRP DYYAEMVKTDTHM KVKGRLL EQ+KMEEAEERRKAREAKKLA
Sbjct: 121 MALEKFQSLGLPFLRPSDYYAEMVKTDTHMQKVKGRLLSEQRKMEEAEERRKAREAKKLA 180

Query: 61  KEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFS--DKGGEMDLSFEDGKAFNKSGGKK 120
           KEIQAQK KERAKQKKEEIESVKKWRKQRQK+ F+  DKGG+MD SFEDGK F +SGGKK
Sbjct: 181 KEIQAQKQKERAKQKKEEIESVKKWRKQRQKNNFAGGDKGGDMDFSFEDGKTFERSGGKK 240

Query: 121 RPGVSPGDRSGGKARHGGGG--KGKN-PKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRG 180
           RPGVSPGDRSGGKARHGGGG  KGKN  KKRDFRDSKFGFGGRKS+KKQNTAETTNDIRG
Sbjct: 241 RPGVSPGDRSGGKARHGGGGGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRG 300

Query: 181 FNNGSLSSNKRRKKS 190
           FNNGSLS+NKRRKKS
Sbjct: 301 FNNGSLSNNKRRKKS 315

[Close]

BLAST of Csor.00g040330 vs. TAIR 10
Match: AT3G22660.1 (rRNA processing protein-related )

HSP 1 Score: 214.2 bits (544), Expect = 9.4e-56
Identity = 124/189 (65.61%), Postives = 149/189 (78.84%), Query Frame = 0


Query: 2   ALEKFQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLAK 61
           A  K   +G+ FLRP +YYAEMVK+D HM KVK RLL E+K++EE+EERRKAR+ K++AK
Sbjct: 108 AFGKLNEMGVNFLRPANYYAEMVKSDVHMEKVKSRLLHEKKQIEESEERRKARDNKRMAK 167

Query: 62  EIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFSDKGGEMDLSFEDGKAFNKSGGKKRPG 121
           E+Q+QK+KERAK+KK+ IESVKKWRKQRQ+SGFSDK GE +L FE GK+F + GGKKRPG
Sbjct: 168 EVQSQKMKERAKEKKDNIESVKKWRKQRQQSGFSDKAGEPELDFESGKSFQRGGGKKRPG 227

Query: 122 VSPGDRSGGKARHGGGGKGKNPKKRDFRDSKFGFGGRKSMKKQNTAETTNDIR-GFNNGS 181
           VSPGDRSGGK R          KKR+FRDSKFG GGRK + KQNTAETTND + GF  G 
Sbjct: 228 VSPGDRSGGKGR---PTSRMGNKKREFRDSKFGHGGRKGLSKQNTAETTNDFKGGFRGGK 287

Query: 182 LSSNKRRKK 190
            S NKR+K+
Sbjct: 288 ASGNKRQKR 293

The following BLAST results are available for this feature:

BLAST of Csor.00g040330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUJ5	1.3e-54	65.61	Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9I8J6	3.3e-13	35.33	Probable rRNA-processing protein EBP2 OS=Xenopus laevis OX=8355 GN=ebna1bp2 PE=2...	[more]
Q09958	3.6e-12	34.72	Probable rRNA-processing protein EBP2 homolog OS=Caenorhabditis elegans OX=6239 ...	[more]
Q9D903	6.2e-12	33.91	Probable rRNA-processing protein EBP2 OS=Mus musculus OX=10090 GN=Ebna1bp2 PE=2 ...	[more]
P36049	5.2e-11	29.26	rRNA-processing protein EBP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S...	[more]

BLAST of Csor.00g040330 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605669.1	1.10e-118	100.00	putative rRNA-processing protein EBP2-like protein, partial [Cucurbita argyrospe...	[more]
XP_023534524.1	7.30e-116	98.95	probable rRNA-processing protein EBP2 homolog [Cucurbita pepo subsp. pepo] >XP_0...	[more]
XP_022958567.1	7.81e-116	98.95	probable rRNA-processing protein EBP2 homolog [Cucurbita moschata] >XP_022958569...	[more]
KAG7035578.1	7.81e-116	98.95	putative rRNA-processing protein EBP2-like protein [Cucurbita argyrosperma subsp...	[more]
XP_022995363.1	5.97e-115	98.42	probable rRNA-processing protein EBP2 homolog [Cucurbita maxima] >XP_022995364.1...	[more]

BLAST of Csor.00g040330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H264	3.78e-116	98.95	probable rRNA-processing protein EBP2 homolog OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1K7Q8	2.89e-115	98.42	probable rRNA-processing protein EBP2 homolog OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1IZU9	9.19e-101	90.16	probable rRNA-processing protein EBP2 homolog OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A1S3CT69	4.70e-100	89.23	probable rRNA-processing protein EBP2 homolog OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A5D3DB33	6.31e-100	89.23	Putative rRNA-processing protein EBP2-like protein OS=Cucumis melo var. makuwa O...	[more]

BLAST of Csor.00g040330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22660.1	9.4e-56	65.61	rRNA processing protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 30..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..190
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..183
None	No IPR available	PANTHER	PTHR13028:SF2	BNAA01G24550D PROTEIN	coord: 2..189
IPR008610	Eukaryotic rRNA processing	PFAM	PF05890	Ebp2	coord: 2..187 e-value: 4.3E-50 score: 170.8
IPR008610	Eukaryotic rRNA processing	PANTHER	PTHR13028	RRNA PROCESSING PROTEIN EBNA1-BINDING PROTEIN-RELATED	coord: 2..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g040330.m01	Csor.00g040330.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0034399	nuclear periphery
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor