Csor.00g039760 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g039760
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionprotein SHORTAGE IN CHIASMATA 1
LocationCsor_Chr02: 6630983 .. 6631249 (-)
RNA-Seq ExpressionCsor.00g039760
SyntenyCsor.00g039760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAAGTCGGTTCCTCCACGTTGATTACTTCGCTCCGGAAAACAAATTCTTCCACCGATTCCCTATAACCTCACCTCGCTTTTTGAAGCCACTTTCCACCGTCGGCGACCTCCTCTGCTTCGATTTTGTCCCTGAATTCTCTCTCGGAATTGATTGGTTAACGATCGATTCTGCTGTCTCCAAGTTCTTTGACGACGTTCTTCCTCGGAGAATCGATGTTGATAATGGATGTCTCGGTGCTGGTGGTCAGTCTTTGAGCTTCTGA

mRNA sequence

ATGCGAAGTCGGTTCCTCCACGTTGATTACTTCGCTCCGGAAAACAAATTCTTCCACCGATTCCCTATAACCTCACCTCGCTTTTTGAAGCCACTTTCCACCGTCGGCGACCTCCTCTGCTTCGATTTTGTCCCTGAATTCTCTCTCGGAATTGATTGGTTAACGATCGATTCTGCTGTCTCCAAGTTCTTTGACGACGTTCTTCCTCGGAGAATCGATGTTGATAATGGATGTCTCGGTGCTGGTGGTCAGTCTTTGAGCTTCTGA

Coding sequence (CDS)

ATGCGAAGTCGGTTCCTCCACGTTGATTACTTCGCTCCGGAAAACAAATTCTTCCACCGATTCCCTATAACCTCACCTCGCTTTTTGAAGCCACTTTCCACCGTCGGCGACCTCCTCTGCTTCGATTTTGTCCCTGAATTCTCTCTCGGAATTGATTGGTTAACGATCGATTCTGCTGTCTCCAAGTTCTTTGACGACGTTCTTCCTCGGAGAATCGATGTTGATAATGGATGTCTCGGTGCTGGTGGTCAGTCTTTGAGCTTCTGA

Protein sequence

MRSRFLHVDYFAPENKFFHRFPITSPRFLKPLSTVGDLLCFDFVPEFSLGIDWLTIDSAVSKFFDDVLPRRIDVDNGCLGAGGQSLSF
Homology
[Close]
BLAST of Csor.00g039760 vs. ExPASy Swiss-Prot
Match: F4KG50 (Protein SHORTAGE IN CHIASMATA 1 OS=Arabidopsis thaliana OX=3702 GN=SHOC1 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.7e-04
Identity = 32/83 (38.55%), Postives = 45/83 (54.22%), Query Frame = 0 

Query: 1  MRSRFLHVDYFA--PENKF----FHRFPITSPRFLKPLSTVG--DLLCFDFVPEFSLGID 60
          MR+RFL++DYF+  P + F    F   P     F  P+   G  D L F  +   S+ I 
Sbjct: 1  MRTRFLNIDYFSTPPSHVFETLGFLNLP-APDNFPAPIVYNGEEDRLRFGSIENVSIPIG 60

Query: 61 WLTIDSAVSKFFDDVLPRRIDVD 76
           L I++A+SKF  DV+P R+ VD
Sbjct: 61 NLPIEAALSKFLSDVVPDRVSVD 82

[Close]
BLAST of Csor.00g039760 vs. NCBI nr
Match: KAG6605724.1 (hypothetical protein SDJN03_03041, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 190 bits (482), Expect = 5.56e-61
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MRSRFLHVDYFAPENKFFHRFPITSPRFLKPLSTVGDLLCFDFVPEFSLGIDWLTIDSAV 60
          MRSRFLHVDYFAPENKFFHRFPITSPRFLKPLSTVGDLLCFDFVPEFSLGIDWLTIDSAV
Sbjct: 1  MRSRFLHVDYFAPENKFFHRFPITSPRFLKPLSTVGDLLCFDFVPEFSLGIDWLTIDSAV 60

Query: 61 SKFFDDVLPRRIDVDNGCLGAGGQSLSF 88
          SKFFDDVLPRRIDVDNGCLGAGGQSLSF
Sbjct: 61 SKFFDDVLPRRIDVDNGCLGAGGQSLSF 88

[Close]
BLAST of Csor.00g039760 vs. NCBI nr
Match: XP_022155768.1 (protein SHORTAGE IN CHIASMATA 1 [Momordica charantia])

HSP 1 Score: 116 bits (290), Expect = 7.96e-28
Identity = 60/85 (70.59%), Postives = 67/85 (78.82%), Query Frame = 0 

Query: 1  MRSRFLHVDYFAPENKFFHRFPITSPRFLKPLSTVGDLLCFDFVPEFSLGIDWLTIDSAV 60
          MR+RFL++DYFAPEN  F R P+      +PLSTV DLL FD VPE SLGID LTIDSA+
Sbjct: 1  MRTRFLNIDYFAPENFSFLRLPLPHLA-SEPLSTVADLLQFDSVPEISLGIDSLTIDSAL 60

Query: 61 SKFFDDVLPRRIDVDNGCLGAGGQS 85
          SKFFDDVLPRRID DNG L AGG+S
Sbjct: 61 SKFFDDVLPRRIDYDNGNLDAGGRS 84

[Close]
BLAST of Csor.00g039760 vs. NCBI nr
Match: XP_038887320.1 (protein SHORTAGE IN CHIASMATA 1 [Benincasa hispida])

HSP 1 Score: 115 bits (288), Expect = 1.48e-27
Identity = 56/76 (73.68%), Postives = 63/76 (82.89%), Query Frame = 0 

Query: 1  MRSRFLHVDYFAPENKFFHRFPITSPRFLKPLSTVGDLLCFDFVPEFSLGIDWLTIDSAV 60
          MR+RFL +DYFAPEN  FHRFP+      KPLSTVGDLL FDFVP+ SLGID LTIDSA+
Sbjct: 1  MRTRFLDIDYFAPENDSFHRFPVPHVA-SKPLSTVGDLLHFDFVPQVSLGIDRLTIDSAL 60

Query: 61 SKFFDDVLPRRIDVDN 76
          +KFFDDV+PRRID DN
Sbjct: 61 TKFFDDVIPRRIDDDN 75

[Close]
BLAST of Csor.00g039760 vs. NCBI nr
Match: XP_022971834.1 (protein SHORTAGE IN CHIASMATA 1 isoform X3 [Cucurbita maxima])

HSP 1 Score: 110 bits (276), Expect = 6.19e-26
Identity = 56/89 (62.92%), Postives = 69/89 (77.53%), Query Frame = 0 

Query: 1  MRSRFLHVDYFAPENKFFHRFPITSPRFLK-PLSTVGDLLCFDFVPEFSLGIDWLTIDSA 60
          MR+RFL++D+FAP N+ FHR P+  P  +  PLSTVGDLL FDF+PE SLGID L+IDSA
Sbjct: 1  MRTRFLNIDFFAPGNESFHRLPV--PHLVSNPLSTVGDLLHFDFLPEISLGIDSLSIDSA 60

Query: 61 VSKFFDDVLPRRIDVDNGCLGAGGQSLSF 88
          +S+FFDDVLPRRI+ D+    AG QS  F
Sbjct: 61 ISRFFDDVLPRRIEDDDVYRDAGCQSSGF 87

[Close]
BLAST of Csor.00g039760 vs. NCBI nr
Match: XP_023554172.1 (protein SHORTAGE IN CHIASMATA 1 isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110 bits (276), Expect = 6.19e-26
Identity = 56/89 (62.92%), Postives = 69/89 (77.53%), Query Frame = 0 

Query: 1  MRSRFLHVDYFAPENKFFHRFPITSPRFLK-PLSTVGDLLCFDFVPEFSLGIDWLTIDSA 60
          MR+RFL++D+FAP N+ FHR P+  P  +  PLSTVGDLL FDF+PE SLGID L+IDSA
Sbjct: 1  MRTRFLNIDFFAPGNESFHRLPV--PHLVSNPLSTVGDLLHFDFLPEISLGIDSLSIDSA 60

Query: 61 VSKFFDDVLPRRIDVDNGCLGAGGQSLSF 88
          +S+FFDDVLPRRI+ D+    AG QS  F
Sbjct: 61 ISRFFDDVLPRRIEDDDVYRDAGCQSSGF 87

[Close]
BLAST of Csor.00g039760 vs. ExPASy TrEMBL
Match: A0A6J1DNT5 (protein SHORTAGE IN CHIASMATA 1 OS=Momordica charantia OX=3673 GN=LOC111022805 PE=4 SV=1)

HSP 1 Score: 116 bits (290), Expect = 3.85e-28
Identity = 60/85 (70.59%), Postives = 67/85 (78.82%), Query Frame = 0 

Query: 1  MRSRFLHVDYFAPENKFFHRFPITSPRFLKPLSTVGDLLCFDFVPEFSLGIDWLTIDSAV 60
          MR+RFL++DYFAPEN  F R P+      +PLSTV DLL FD VPE SLGID LTIDSA+
Sbjct: 1  MRTRFLNIDYFAPENFSFLRLPLPHLA-SEPLSTVADLLQFDSVPEISLGIDSLTIDSAL 60

Query: 61 SKFFDDVLPRRIDVDNGCLGAGGQS 85
          SKFFDDVLPRRID DNG L AGG+S
Sbjct: 61 SKFFDDVLPRRIDYDNGNLDAGGRS 84

[Close]
BLAST of Csor.00g039760 vs. ExPASy TrEMBL
Match: A0A6J1I9N8 (protein SHORTAGE IN CHIASMATA 1 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111470528 PE=4 SV=1)

HSP 1 Score: 110 bits (276), Expect = 3.00e-26
Identity = 56/89 (62.92%), Postives = 69/89 (77.53%), Query Frame = 0 

Query: 1  MRSRFLHVDYFAPENKFFHRFPITSPRFLK-PLSTVGDLLCFDFVPEFSLGIDWLTIDSA 60
          MR+RFL++D+FAP N+ FHR P+  P  +  PLSTVGDLL FDF+PE SLGID L+IDSA
Sbjct: 1  MRTRFLNIDFFAPGNESFHRLPV--PHLVSNPLSTVGDLLHFDFLPEISLGIDSLSIDSA 60

Query: 61 VSKFFDDVLPRRIDVDNGCLGAGGQSLSF 88
          +S+FFDDVLPRRI+ D+    AG QS  F
Sbjct: 61 ISRFFDDVLPRRIEDDDVYRDAGCQSSGF 87

[Close]
BLAST of Csor.00g039760 vs. ExPASy TrEMBL
Match: A0A6J1I842 (protein SHORTAGE IN CHIASMATA 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470528 PE=4 SV=1)

HSP 1 Score: 110 bits (276), Expect = 3.00e-26
Identity = 56/89 (62.92%), Postives = 69/89 (77.53%), Query Frame = 0 

Query: 1  MRSRFLHVDYFAPENKFFHRFPITSPRFLK-PLSTVGDLLCFDFVPEFSLGIDWLTIDSA 60
          MR+RFL++D+FAP N+ FHR P+  P  +  PLSTVGDLL FDF+PE SLGID L+IDSA
Sbjct: 1  MRTRFLNIDFFAPGNESFHRLPV--PHLVSNPLSTVGDLLHFDFLPEISLGIDSLSIDSA 60

Query: 61 VSKFFDDVLPRRIDVDNGCLGAGGQSLSF 88
          +S+FFDDVLPRRI+ D+    AG QS  F
Sbjct: 61 ISRFFDDVLPRRIEDDDVYRDAGCQSSGF 87

[Close]
BLAST of Csor.00g039760 vs. ExPASy TrEMBL
Match: A0A6J1I320 (protein SHORTAGE IN CHIASMATA 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470528 PE=4 SV=1)

HSP 1 Score: 110 bits (276), Expect = 3.00e-26
Identity = 56/89 (62.92%), Postives = 69/89 (77.53%), Query Frame = 0 

Query: 1  MRSRFLHVDYFAPENKFFHRFPITSPRFLK-PLSTVGDLLCFDFVPEFSLGIDWLTIDSA 60
          MR+RFL++D+FAP N+ FHR P+  P  +  PLSTVGDLL FDF+PE SLGID L+IDSA
Sbjct: 1  MRTRFLNIDFFAPGNESFHRLPV--PHLVSNPLSTVGDLLHFDFLPEISLGIDSLSIDSA 60

Query: 61 VSKFFDDVLPRRIDVDNGCLGAGGQSLSF 88
          +S+FFDDVLPRRI+ D+    AG QS  F
Sbjct: 61 ISRFFDDVLPRRIEDDDVYRDAGCQSSGF 87

[Close]
BLAST of Csor.00g039760 vs. ExPASy TrEMBL
Match: A0A6J1GJU9 (protein SHORTAGE IN CHIASMATA 1 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111454972 PE=4 SV=1)

HSP 1 Score: 108 bits (271), Expect = 1.42e-25
Identity = 56/89 (62.92%), Postives = 68/89 (76.40%), Query Frame = 0 

Query: 1  MRSRFLHVDYFAPENKFFHRFPITSPRFLK-PLSTVGDLLCFDFVPEFSLGIDWLTIDSA 60
          MR+RFL++D+FAP N+ FHR P+  P  +  PLSTVGDLL FDF+PE SLGID L+IDSA
Sbjct: 1  MRTRFLNIDFFAPGNESFHRLPV--PHLVSNPLSTVGDLLHFDFLPEISLGIDSLSIDSA 60

Query: 61 VSKFFDDVLPRRIDVDNGCLGAGGQSLSF 88
          +S+FFDDVLPRRI  D+    AG QS  F
Sbjct: 61 ISRFFDDVLPRRIVDDDVYRDAGCQSSGF 87

[Close]
BLAST of Csor.00g039760 vs. TAIR 10
Match: AT5G52290.1 (shortage in chiasmata 1 )

HSP 1 Score: 46.6 bits (109), Expect = 1.2e-05
Identity = 32/83 (38.55%), Postives = 45/83 (54.22%), Query Frame = 0 

Query: 1  MRSRFLHVDYFA--PENKF----FHRFPITSPRFLKPLSTVG--DLLCFDFVPEFSLGID 60
          MR+RFL++DYF+  P + F    F   P     F  P+   G  D L F  +   S+ I 
Sbjct: 1  MRTRFLNIDYFSTPPSHVFETLGFLNLP-APDNFPAPIVYNGEEDRLRFGSIENVSIPIG 60

Query: 61 WLTIDSAVSKFFDDVLPRRIDVD 76
           L I++A+SKF  DV+P R+ VD
Sbjct: 61 NLPIEAALSKFLSDVVPDRVSVD 82

The following BLAST results are available for this feature:
BLAST of Csor.00g039760 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4KG501.7e-0438.55Protein SHORTAGE IN CHIASMATA 1 OS=Arabidopsis thaliana OX=3702 GN=SHOC1 PE=1 SV... [more]
BLAST of Csor.00g039760 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6605724.15.56e-61100.00hypothetical protein SDJN03_03041, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022155768.17.96e-2870.59protein SHORTAGE IN CHIASMATA 1 [Momordica charantia][more]
XP_038887320.11.48e-2773.68protein SHORTAGE IN CHIASMATA 1 [Benincasa hispida][more]
XP_022971834.16.19e-2662.92protein SHORTAGE IN CHIASMATA 1 isoform X3 [Cucurbita maxima][more]
XP_023554172.16.19e-2662.92protein SHORTAGE IN CHIASMATA 1 isoform X4 [Cucurbita pepo subsp. pepo][more]
BLAST of Csor.00g039760 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DNT53.85e-2870.59protein SHORTAGE IN CHIASMATA 1 OS=Momordica charantia OX=3673 GN=LOC111022805 P... [more]
A0A6J1I9N83.00e-2662.92protein SHORTAGE IN CHIASMATA 1 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A6J1I8423.00e-2662.92protein SHORTAGE IN CHIASMATA 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A6J1I3203.00e-2662.92protein SHORTAGE IN CHIASMATA 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A6J1GJU91.42e-2562.92protein SHORTAGE IN CHIASMATA 1 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
BLAST of Csor.00g039760 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G52290.11.2e-0538.55shortage in chiasmata 1 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g039760.m01Csor.00g039760.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007131 reciprocal meiotic recombination
cellular_component GO:0016020 membrane