Csor.00g039560 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g039560
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	WRKY transcription factor
Location	Csor_Chr02: 6717478 .. 6717957 (+)
RNA-Seq Expression	Csor.00g039560
Synteny	Csor.00g039560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCGGAGACGACGACTGGGATCTCTCCGCCGTCGTCCGGAGCTGCTATTCAGGCTCCTCCACGTCCTCCTCCTCCACCACCGCCGACCCAACTGCCGCTTCCGCCGCAGAAACCGCCTTGTCTTGTCTCGCTTCCTTAACTTTTGACGACGATCCAAACAACGTCGCATTCTCCTTTTCCGACATCCTTCACCCCCAACAGCCCAACGGCTTCCATGAATTACACCAAGCCTTCATTTCTTTCCTCCCCAACCCCGTCGCCCCCGCCGTCGCCCCCGCCGCACCGGAAATCCCCAATCCGGTTCCAACCCGCCAATCCCGACACGGAATTAAACCCATTCGACCACAGCCAGATCCCGGAGCGGTGGCGCTGCAATCCCATCACCGGCAACAGCCACTTTTCCGGCCAGACTTCCCAAATTCACCAATGACGCCTCCTCACATACCCAAATCGAGAAAAAGGCAAGTAATTTAA

mRNA sequence

ATGGCTGCCGGAGACGACGACTGGGATCTCTCCGCCGTCGTCCGGAGCTGCTATTCAGGCTCCTCCACGTCCTCCTCCTCCACCACCGCCGACCCAACTGCCGCTTCCGCCGCAGAAACCGCCTTGTCTTGTCTCGCTTCCTTAACTTTTGACGACGATCCAAACAACGTCGCATTCTCCTTTTCCGACATCCTTCACCCCCAACAGCCCAACGGCTTCCATGAATTACACCAAGCCTTCATTTCTTTCCTCCCCAACCCCGTCGCCCCCGCCGTCGCCCCCGCCGCACCGGAAATCCCCAATCCGGTTCCAACCCGCCAATCCCGACACGGAATTAAACCCATTCGACCACAGCCAGATCCCGGAGCGGTGGCGCTGCAATCCCATCACCGGCAACAGCCACTTTTCCGGCCAGACTTCCCAAATTCACCAATGACGCCTCCTCACATACCCAAATCGAGAAAAAGGCAAGTAATTTAA

Coding sequence (CDS)

ATGGCTGCCGGAGACGACGACTGGGATCTCTCCGCCGTCGTCCGGAGCTGCTATTCAGGCTCCTCCACGTCCTCCTCCTCCACCACCGCCGACCCAACTGCCGCTTCCGCCGCAGAAACCGCCTTGTCTTGTCTCGCTTCCTTAACTTTTGACGACGATCCAAACAACGTCGCATTCTCCTTTTCCGACATCCTTCACCCCCAACAGCCCAACGGCTTCCATGAATTACACCAAGCCTTCATTTCTTTCCTCCCCAACCCCGTCGCCCCCGCCGTCGCCCCCGCCGCACCGGAAATCCCCAATCCGGTTCCAACCCGCCAATCCCGACACGGAATTAAACCCATTCGACCACAGCCAGATCCCGGAGCGGTGGCGCTGCAATCCCATCACCGGCAACAGCCACTTTTCCGGCCAGACTTCCCAAATTCACCAATGACGCCTCCTCACATACCCAAATCGAGAAAAAGGCAAGTAATTTAA

Protein sequence

MAAGDDDWDLSAVVRSCYSGSSTSSSSTTADPTAASAAETALSCLASLTFDDDPNNVAFSFSDILHPQQPNGFHELHQAFISFLPNPVAPAVAPAAPEIPNPVPTRQSRHGIKPIRPQPDPGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKRQVI

Homology

[Close]

BLAST of Csor.00g039560 vs. NCBI nr
Match: KAG6605744.1 (hypothetical protein SDJN03_03061, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 314 bits (805), Expect = 5.79e-108
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MAAGDDDWDLSAVVRSCYSGSSTSSSSTTADPTAASAAETALSCLASLTFDDDPNNVAFS 60
           MAAGDDDWDLSAVVRSCYSGSSTSSSSTTADPTAASAAETALSCLASLTFDDDPNNVAFS
Sbjct: 1   MAAGDDDWDLSAVVRSCYSGSSTSSSSTTADPTAASAAETALSCLASLTFDDDPNNVAFS 60

Query: 61  FSDILHPQQPNGFHELHQAFISFLPNPVAPAVAPAAPEIPNPVPTRQSRHGIKPIRPQPD 120
           FSDILHPQQPNGFHELHQAFISFLPNPVAPAVAPAAPEIPNPVPTRQSRHGIKPIRPQPD
Sbjct: 61  FSDILHPQQPNGFHELHQAFISFLPNPVAPAVAPAAPEIPNPVPTRQSRHGIKPIRPQPD 120

Query: 121 PGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKRQVI 159
           PGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKRQVI
Sbjct: 121 PGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKRQVI 159

[Close]

BLAST of Csor.00g039560 vs. NCBI nr
Match: KAG7035649.1 (putative WRKY transcription factor 27, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 308 bits (790), Expect = 4.35e-103
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MAAGDDDWDLSAVVRSCYSGSSTSSSSTTADPTAASAAETALSCLASLTFDDDPNNVAFS 60
           MAAGDDDWDLSAVVRSCYSGSSTSSSST ADPTAASAAETALSCLASLTFDDDPNNVAFS
Sbjct: 1   MAAGDDDWDLSAVVRSCYSGSSTSSSSTAADPTAASAAETALSCLASLTFDDDPNNVAFS 60

Query: 61  FSDILHPQQPNGFHELHQAFISFLPNPVAPAVAPAAPEIPNPVPTRQSRHGIKPIRPQPD 120
           FSDILHPQQPNGFHELHQAFISFLPNPVAPAVAPAAPEIPNPVPTRQSRHGIKPIRPQPD
Sbjct: 61  FSDILHPQQPNGFHELHQAFISFLPNPVAPAVAPAAPEIPNPVPTRQSRHGIKPIRPQPD 120

Query: 121 PGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKRQ 157
           PGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKRQ
Sbjct: 121 PGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKRQ 157

[Close]

BLAST of Csor.00g039560 vs. NCBI nr
Match: XP_022958605.1 (probable WRKY transcription factor 27 [Cucurbita moschata])

HSP 1 Score: 306 bits (783), Expect = 5.03e-102
Identity = 154/157 (98.09%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MAAGDDDWDLSAVVRSCYSGSSTSSSSTTADPTAASAAETALSCLASLTFDDDPNNVAFS 60
           MAAGDDDWDLSAVVRSCYSGSSTSS+ST ADPTAASAAETALSCLASLTFDDDPNNVAFS
Sbjct: 1   MAAGDDDWDLSAVVRSCYSGSSTSSTSTAADPTAASAAETALSCLASLTFDDDPNNVAFS 60

Query: 61  FSDILHPQQPNGFHELHQAFISFLPNPVAPAVAPAAPEIPNPVPTRQSRHGIKPIRPQPD 120
           FSDILHPQQPNGFHELHQAFISFLPNPVAPAVAPAAPEIPNPVPTRQSRHGIKPIRPQPD
Sbjct: 61  FSDILHPQQPNGFHELHQAFISFLPNPVAPAVAPAAPEIPNPVPTRQSRHGIKPIRPQPD 120

Query: 121 PGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKRQ 157
           PGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKR+
Sbjct: 121 PGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKRK 157

[Close]

BLAST of Csor.00g039560 vs. NCBI nr
Match: XP_022996002.1 (probable WRKY transcription factor 27 [Cucurbita maxima])

HSP 1 Score: 305 bits (782), Expect = 7.13e-102
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MAAGDDDWDLSAVVRSCYSGSSTSSSSTTADPTAASAAETALSCLASLTFDDDPNNVAFS 60
           MAAGDDDWDLSAVVRSCYSGSSTSSSST ADPTAASAAETALSCLASLTFDDDPNNVAFS
Sbjct: 1   MAAGDDDWDLSAVVRSCYSGSSTSSSSTAADPTAASAAETALSCLASLTFDDDPNNVAFS 60

Query: 61  FSDILHPQQPNGFHELHQAFISFLPNPVAPAVAPAAPEIPNPVPTRQSRHGIKPIRPQPD 120
           FSDILHPQQPNGFHELHQAFISFLPNPVAPAVAP APEIPNPVPTRQSRHGIKPIRPQPD
Sbjct: 61  FSDILHPQQPNGFHELHQAFISFLPNPVAPAVAPVAPEIPNPVPTRQSRHGIKPIRPQPD 120

Query: 121 PGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKRQ 157
           PGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKR+
Sbjct: 121 PGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKRK 157

[Close]

BLAST of Csor.00g039560 vs. NCBI nr
Match: XP_023534342.1 (probable WRKY transcription factor 27 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 300 bits (769), Expect = 6.72e-100
Identity = 152/157 (96.82%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 1   MAAGDDDWDLSAVVRSCYSGSSTSSSSTTADPTAASAAETALSCLASLTFDDDPNNVAFS 60
           MAAGDDDWDLSAVVRSCYSGSSTSS+ST ADPTAASAAETALSCLASLTFDDDPNNVAFS
Sbjct: 1   MAAGDDDWDLSAVVRSCYSGSSTSSTSTAADPTAASAAETALSCLASLTFDDDPNNVAFS 60

Query: 61  FSDILHPQQPNGFHELHQAFISFLPNPVAPAVAPAAPEIPNPVPTRQSRHGIKPIRPQPD 120
           FSDILHPQQPNGFHELHQAFISFLPNPVAPAVAPAAP IPNPVPTRQSRHGIKPIRP PD
Sbjct: 61  FSDILHPQQPNGFHELHQAFISFLPNPVAPAVAPAAPVIPNPVPTRQSRHGIKPIRPLPD 120

Query: 121 PGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKRQ 157
           PGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKR+
Sbjct: 121 PGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKRK 157

[Close]

BLAST of Csor.00g039560 vs. ExPASy TrEMBL
Match: A0A6J1H3Z3 (probable WRKY transcription factor 27 OS=Cucurbita moschata OX=3662 GN=LOC111459781 PE=4 SV=1)

HSP 1 Score: 306 bits (783), Expect = 2.43e-102
Identity = 154/157 (98.09%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MAAGDDDWDLSAVVRSCYSGSSTSSSSTTADPTAASAAETALSCLASLTFDDDPNNVAFS 60
           MAAGDDDWDLSAVVRSCYSGSSTSS+ST ADPTAASAAETALSCLASLTFDDDPNNVAFS
Sbjct: 1   MAAGDDDWDLSAVVRSCYSGSSTSSTSTAADPTAASAAETALSCLASLTFDDDPNNVAFS 60

Query: 61  FSDILHPQQPNGFHELHQAFISFLPNPVAPAVAPAAPEIPNPVPTRQSRHGIKPIRPQPD 120
           FSDILHPQQPNGFHELHQAFISFLPNPVAPAVAPAAPEIPNPVPTRQSRHGIKPIRPQPD
Sbjct: 61  FSDILHPQQPNGFHELHQAFISFLPNPVAPAVAPAAPEIPNPVPTRQSRHGIKPIRPQPD 120

Query: 121 PGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKRQ 157
           PGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKR+
Sbjct: 121 PGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKRK 157

[Close]

BLAST of Csor.00g039560 vs. ExPASy TrEMBL
Match: A0A6J1K0K0 (probable WRKY transcription factor 27 OS=Cucurbita maxima OX=3661 GN=LOC111491344 PE=4 SV=1)

HSP 1 Score: 305 bits (782), Expect = 3.45e-102
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MAAGDDDWDLSAVVRSCYSGSSTSSSSTTADPTAASAAETALSCLASLTFDDDPNNVAFS 60
           MAAGDDDWDLSAVVRSCYSGSSTSSSST ADPTAASAAETALSCLASLTFDDDPNNVAFS
Sbjct: 1   MAAGDDDWDLSAVVRSCYSGSSTSSSSTAADPTAASAAETALSCLASLTFDDDPNNVAFS 60

Query: 61  FSDILHPQQPNGFHELHQAFISFLPNPVAPAVAPAAPEIPNPVPTRQSRHGIKPIRPQPD 120
           FSDILHPQQPNGFHELHQAFISFLPNPVAPAVAP APEIPNPVPTRQSRHGIKPIRPQPD
Sbjct: 61  FSDILHPQQPNGFHELHQAFISFLPNPVAPAVAPVAPEIPNPVPTRQSRHGIKPIRPQPD 120

Query: 121 PGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKRQ 157
           PGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKR+
Sbjct: 121 PGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKRK 157

[Close]

BLAST of Csor.00g039560 vs. ExPASy TrEMBL
Match: A0A0A0KNF3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139940 PE=4 SV=1)

HSP 1 Score: 190 bits (483), Expect = 3.41e-59
Identity = 108/167 (64.67%), Postives = 117/167 (70.06%), Query Frame = 0


Query: 1   MAAGDDDWDLSAVVRSCYSGSSTSSSSTTADPTAASAAETALSCLASLTFDDDPNNVAFS 60
           MAAG+DDWDLSAVVRSC S  S +      DPT+A+A E+ALSCLASLTFDDDPN+VAFS
Sbjct: 1   MAAGNDDWDLSAVVRSCNSAGSAT------DPTSAAAEESALSCLASLTFDDDPNDVAFS 60

Query: 61  FSDILHPQQPNGFHELHQAFISFLPNP--------VAPAVAPAAPEIPNPVPTRQSRHGI 120
           FSDI  P+QPNGFHELHQAFISFLPNP          PA  P  P +  P   R  R  +
Sbjct: 61  FSDIFQPKQPNGFHELHQAFISFLPNPSTTATTVTTVPAAEPEIPYLTTPPTNRHFRQVM 120

Query: 121 KPIRPQPDPGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKRQVI 159
           KPIRP P P  VAL  HHRQ P F PD PNSPMT   IPKSRKRQVI
Sbjct: 121 KPIRPNPHPHPVALHHHHRQPP-FSPDLPNSPMTHSLIPKSRKRQVI 160

[Close]

BLAST of Csor.00g039560 vs. ExPASy TrEMBL
Match: A0A5A7TGX7 (WRKY transcription factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00900 PE=4 SV=1)

HSP 1 Score: 179 bits (454), Expect = 1.85e-52
Identity = 111/171 (64.91%), Postives = 122/171 (71.35%), Query Frame = 0


Query: 1   MAAGDDDWDLSAVVRSCYSGSSTSSSSTTADPTAASAAETALSCLASLTFDDDPNNVAFS 60
           MAAG+DDWDLSAVVRSC S +S +      DPT+A AAE+ALSCLASLTFDDDP++VAFS
Sbjct: 1   MAAGNDDWDLSAVVRSCNSAASAT------DPTSA-AAESALSCLASLTFDDDPDDVAFS 60

Query: 61  FSDILHPQQPNG-FHELHQAFISFLPNPVAP-----------AVAPAAPEIPNPVP-TRQ 120
           FSDI  P+QPNG FHELHQAF+SFLPNP A            AV  + PEIP P P  R 
Sbjct: 61  FSDIFQPKQPNGGFHELHQAFVSFLPNPSATDTTTTTTTTVTAVPVSEPEIPYPTPPNRH 120

Query: 121 SRHGIKPIRPQPDPGAVALQSH-HRQQPLFRPDFPNSPMTPPHIPKSRKRQ 157
            R GIKPIRP P P  VALQ H H +QP F PD PNSPMT   IPKSRKRQ
Sbjct: 121 FRQGIKPIRPNPPP--VALQQHPHHRQPPFSPDLPNSPMTQSLIPKSRKRQ 162

[Close]

BLAST of Csor.00g039560 vs. ExPASy TrEMBL
Match: E5GBD4 (WRKY transcription factor OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 179 bits (454), Expect = 1.95e-52
Identity = 111/171 (64.91%), Postives = 122/171 (71.35%), Query Frame = 0


Query: 1   MAAGDDDWDLSAVVRSCYSGSSTSSSSTTADPTAASAAETALSCLASLTFDDDPNNVAFS 60
           MAAG+DDWDLSAVVRSC S +S +      DPT+A AAE+ALSCLASLTFDDDP++VAFS
Sbjct: 1   MAAGNDDWDLSAVVRSCNSAASAT------DPTSA-AAESALSCLASLTFDDDPDDVAFS 60

Query: 61  FSDILHPQQPNG-FHELHQAFISFLPNPVAP-----------AVAPAAPEIPNPVP-TRQ 120
           FSDI  P+QPNG FHELHQAF+SFLPNP A            AV  + PEIP P P  R 
Sbjct: 61  FSDIFQPKQPNGGFHELHQAFVSFLPNPSATDTTTTTTTTVTAVPVSEPEIPYPTPPNRH 120

Query: 121 SRHGIKPIRPQPDPGAVALQSH-HRQQPLFRPDFPNSPMTPPHIPKSRKRQ 157
            R GIKPIRP P P  VALQ H H +QP F PD PNSPMT   IPKSRKRQ
Sbjct: 121 FRQGIKPIRPNPPP--VALQQHPHHRQPPFSPDLPNSPMTQSLIPKSRKRQ 162

The following BLAST results are available for this feature:

BLAST of Csor.00g039560 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g039560 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605744.1	5.79e-108	100.00	hypothetical protein SDJN03_03061, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7035649.1	4.35e-103	99.36	putative WRKY transcription factor 27, partial [Cucurbita argyrosperma subsp. ar...	[more]
XP_022958605.1	5.03e-102	98.09	probable WRKY transcription factor 27 [Cucurbita moschata]	[more]
XP_022996002.1	7.13e-102	98.09	probable WRKY transcription factor 27 [Cucurbita maxima]	[more]
XP_023534342.1	6.72e-100	96.82	probable WRKY transcription factor 27 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g039560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H3Z3	2.43e-102	98.09	probable WRKY transcription factor 27 OS=Cucurbita moschata OX=3662 GN=LOC111459...	[more]
A0A6J1K0K0	3.45e-102	98.09	probable WRKY transcription factor 27 OS=Cucurbita maxima OX=3661 GN=LOC11149134...	[more]
A0A0A0KNF3	3.41e-59	64.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139940 PE=4 SV=1	[more]
A0A5A7TGX7	1.85e-52	64.91	WRKY transcription factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
E5GBD4	1.95e-52	64.91	WRKY transcription factor OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of Csor.00g039560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..159
None	No IPR available	PANTHER	PTHR32096:SF80	WRKY TRANSCRIPTION FACTOR 27-RELATED	coord: 6..156
IPR044810	WRKY transcription factor, plant	PANTHER	PTHR32096	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	coord: 6..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g039560.m01	Csor.00g039560.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding