Csor.00g039540 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g039540
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	60S ribosomal protein L9-like
Location	Csor_Chr02: 6720789 .. 6722546 (-)
RNA-Seq Expression	Csor.00g039540
Synteny	Csor.00g039540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACGATCCTCTCATCGGAAACTATGGATATCCCCGAGGGGGTGAAGATCAAAGTGAACGCCAAAATCATAGAGGTAGAAGGCCCTCGGGGAAAACTCATTCGTAACTTCAAGCATTTGAATTTGGATTTCCAGTTGATTACCGAAGAGGAAACTGGAAAGAAGAAGCTCAAGATTGATGCCTGGTTCGGATCCAGGAAGACTTCGGCTGCCATTCGTACTGCACTTAGCCATGTTGAGAATCTCATCACTGGTGTTACCAAGGGTTATCGTTACAAGATGCGGTTTGTTTATGCTCATTTTCCGATCAATGCTAGCATCACCAGCGGCAACAAGTCTATCGAGATCCGTAACTTTCTTGGTGAGAAAAAGGTATAACTCTTAACCCCACTTTATTGTCATTAGTTTCGCTATTTGTATTCTGAATTCATGTTTACTGCTGCGTTTGGAATTTTACCATAATTGAATGTGAAATGATCGATTTGTAAGTGTTAAGATGAACTGGTTGACTAGTTTTGTAACTACTTCATGACGAAAGCCCTAGCTTTACAATATCATTCATTGTCCTTCCTCCTTTCGTAATTGTTTTAGCCGTACCCCTTGAAAGGGCATATGTTTAAAAATAGATCAGTTAATTTGTACATTGTCTTTACTTGATTTGATTCTCCACAATGTCTATGGTTTAACTTCAGCACCAACAAACACATAATGTCAGTTAGAGAGCAGCAGTGGGTTCAACTATTTTGGAGAATTATTGTTTTTTCTATATACTATCGGTATCTAAAATATAAAATGATGTTCCTTAAGGTTGAGTTGAAAAAAAAATAAACTCCCCACGGTCGGGATTTGGAATCTAGATTTGACACTTGATGATACATTCTTCTACATATCCCACTTACATCGCCACCTATTTGCCACCTATTCTTCTACTAATCCCCACAAGCTAGTTTGGGTTCTTTTAATATGCTTTTTTTTTTTTTTTTTTTTGCTCACATGCTTGGTAGAATAATTGCTTAGTAGTTGAATTTCTCTATCTCAAGCATGATAAAAAACAGGTGGGGCCACTAAAAAAAGGTGTATTTTGTTTGTCTAGATAGTAATTTCAATTATTTGAAATCGTGCTCAAACTTCTATCCTTAGGATCACTCTTTATTTATGTACTTCTTTACTTGAGTATCACAAAAAATGTAGTAAAAACTACTTTGATTACATTAGAAGGAAATAGATACATTGAATGCTGTCCTTTGGTCATTTCATCCAGTCCAATTGTCATAAAATTCAAACATTTATATAAACATAACAAGTACGTACTCCAAATAATTTTTATTAAAAAATCCTCTTTTTTATTTTCATGCTTATTAACAATTGTTCTTGTAAGTACATTTGTTACTATTTATATGATGCATGGATGTGAAGTCTTTCTTCTCTGCAAAACAGGTGCGAAAGGTGGATATGCTTGACGGGGTATCGATTGTTCGATCTGAGAAGGTCAAAGATGAGTTAGTCTTGGATGGTAATGATATAGAGCTTGTATCTCGGTCTGCTGCCTTGATAAACCAGGTCCCTTTCTCTTCCTCGCCACTTAGTGATTTATTCTTGCTTGCAAAACTTCTTTGCCTGTACTGGTCATAATCTGTAGTCTTATACTTGTTTTGTTCTGGGTGACAGAAATGCCATGTCAAGAACAAAGACATCCGGAAATTCCTTGATGGTATTTATGTCAGCGAAAAAGGAACTGTTTTCGAAGAGGAGTGA

mRNA sequence

ATGAAGACGATCCTCTCATCGGAAACTATGGATATCCCCGAGGGGGTGAAGATCAAAGTGAACGCCAAAATCATAGAGGTAGAAGGCCCTCGGGGAAAACTCATTCGTAACTTCAAGCATTTGAATTTGGATTTCCAGTTGATTACCGAAGAGGAAACTGGAAAGAAGAAGCTCAAGATTGATGCCTGGTTCGGATCCAGGAAGACTTCGGCTGCCATTCGTACTGCACTTAGCCATGTTGAGAATCTCATCACTGGTGTTACCAAGGGTTATCGTTACAAGATGCGGTTTGTTTATGCTCATTTTCCGATCAATGCTAGCATCACCAGCGGCAACAAGTCTATCGAGATCCGTAACTTTCTTGGTGAGAAAAAGGTGCGAAAGGTGGATATGCTTGACGGGGTATCGATTGTTCGATCTGAGAAGGTCAAAGATGAGTTAGTCTTGGATGGTAATGATATAGAGCTTGTATCTCGGTCTGCTGCCTTGATAAACCAGAAATGCCATGTCAAGAACAAAGACATCCGGAAATTCCTTGATGGTATTTATGTCAGCGAAAAAGGAACTGTTTTCGAAGAGGAGTGA

Coding sequence (CDS)

ATGAAGACGATCCTCTCATCGGAAACTATGGATATCCCCGAGGGGGTGAAGATCAAAGTGAACGCCAAAATCATAGAGGTAGAAGGCCCTCGGGGAAAACTCATTCGTAACTTCAAGCATTTGAATTTGGATTTCCAGTTGATTACCGAAGAGGAAACTGGAAAGAAGAAGCTCAAGATTGATGCCTGGTTCGGATCCAGGAAGACTTCGGCTGCCATTCGTACTGCACTTAGCCATGTTGAGAATCTCATCACTGGTGTTACCAAGGGTTATCGTTACAAGATGCGGTTTGTTTATGCTCATTTTCCGATCAATGCTAGCATCACCAGCGGCAACAAGTCTATCGAGATCCGTAACTTTCTTGGTGAGAAAAAGGTGCGAAAGGTGGATATGCTTGACGGGGTATCGATTGTTCGATCTGAGAAGGTCAAAGATGAGTTAGTCTTGGATGGTAATGATATAGAGCTTGTATCTCGGTCTGCTGCCTTGATAAACCAGAAATGCCATGTCAAGAACAAAGACATCCGGAAATTCCTTGATGGTATTTATGTCAGCGAAAAAGGAACTGTTTTCGAAGAGGAGTGA

Protein sequence

MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKIDAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNFLGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTVFEEE

Homology

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BLAST of Csor.00g039540 vs. ExPASy Swiss-Prot
Match: P30707 (60S ribosomal protein L9 OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.1e-91
Identity = 172/194 (88.66%), Postives = 183/194 (94.33%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60
           MKTILSSETM+IP+GV IKVNAK+IEVEGPRGKL+R+FKHLNLDF LIT +E GKKKLKI
Sbjct: 1   MKTILSSETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLIT-DENGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKG+RYKMRFVYA FPINASIT+ NKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVD+LDGVSI+RSEKVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTVFEEE 195
           GIYVSEKG V  EE
Sbjct: 181 GIYVSEKGAVVVEE 193

[Close]

BLAST of Csor.00g039540 vs. ExPASy Swiss-Prot
Match: P49209 (60S ribosomal protein L9-1 OS=Arabidopsis thaliana OX=3702 GN=RPL9B PE=1 SV=3)

HSP 1 Score: 330.5 bits (846), Expect = 1.3e-89
Identity = 164/194 (84.54%), Postives = 181/194 (93.30%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60
           MKTILSSETMDIP+ V IKV+AK+IEVEGPRGKL+R+FKHLNLDFQLI + ETGKKKLKI
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120
           D+WFG+RKTSA+IRTALSHV+NLI+GVT+G+RYKMRFVYAHFPINASI    KSIEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV+IVRSEKVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTVFEEE 195
           GIYVSEK  + EEE
Sbjct: 181 GIYVSEKSKIVEEE 194

[Close]

BLAST of Csor.00g039540 vs. ExPASy Swiss-Prot
Match: Q9SZX9 (60S ribosomal protein L9-2 OS=Arabidopsis thaliana OX=3702 GN=RPL9D PE=2 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 4.1e-88
Identity = 161/194 (82.99%), Postives = 179/194 (92.27%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60
           MKTILSSETMDIP+GV IKVNAK+IEVEGPRGKL R+FKHLNLDFQLI ++ TGK++LKI
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120
           D+WFGSRKTSA+IRTALSHV+NLI GVT+G+ Y+MRFVYAHFPINASI   NKSIEIRNF
Sbjct: 61  DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV IVRSEKVKDE++L+GNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTVFEEE 195
           GIYVSEKG +  EE
Sbjct: 181 GIYVSEKGKIAVEE 194

[Close]

BLAST of Csor.00g039540 vs. ExPASy Swiss-Prot
Match: P49210 (60S ribosomal protein L9 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL9 PE=2 SV=3)

HSP 1 Score: 317.8 bits (813), Expect = 8.7e-86
Identity = 157/193 (81.35%), Postives = 179/193 (92.75%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60
           MKTIL+SETM+IPEGV ++V AK++ VEGPRGKL RNFKHLNLDFQL+     G +KL++
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLL----EGGRKLQV 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120
           DAWFG+R+T AAIRTA+SHV+NLITGVTKGYRYKMRFVYAHFPINASIT+ N +IEIRNF
Sbjct: 61  DAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDML+GV+I+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVFEE 194
           GIYVS+KGT+ E+
Sbjct: 181 GIYVSDKGTITED 189

[Close]

BLAST of Csor.00g039540 vs. ExPASy Swiss-Prot
Match: Q90YW0 (60S ribosomal protein L9 OS=Ictalurus punctatus OX=7998 GN=rpl9 PE=2 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.0e-58
Identity = 115/194 (59.28%), Postives = 144/194 (74.23%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60
           MKTILS++T+DIP+ V + +  + + V+GPRG L R F H+NL+ +L+ +++   KKL++
Sbjct: 1   MKTILSTQTVDIPDNVDVTLKGRTVSVKGPRGVLRREFNHINLELRLLGKKQ---KKLRV 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120
           D W+G+RK  A +RT  SHV+N+I GVT G+RYKMR VYAHFPIN  I      +EIRNF
Sbjct: 61  DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEK +R+V M  GV+   S   KDELVL+GNDIELVS SAALI Q   VKNKDIRKFLD
Sbjct: 121 LGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVFEEE 195
           GIYVSEKGTV E E
Sbjct: 181 GIYVSEKGTVVEPE 191

[Close]

BLAST of Csor.00g039540 vs. NCBI nr
Match: XP_022958609.1 (60S ribosomal protein L9-like [Cucurbita moschata] >XP_023532091.1 60S ribosomal protein L9-like [Cucurbita pepo subsp. pepo] >KAG6605746.1 60S ribosomal protein L9, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035650.1 60S ribosomal protein L9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 381 bits (978), Expect = 3.44e-133
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60
           MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI
Sbjct: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVFEEE 194
           GIYVSEKGTVFEEE
Sbjct: 181 GIYVSEKGTVFEEE 194

[Close]

BLAST of Csor.00g039540 vs. NCBI nr
Match: XP_022996012.1 (60S ribosomal protein L9-like [Cucurbita maxima])

HSP 1 Score: 379 bits (972), Expect = 2.83e-132
Identity = 193/194 (99.48%), Postives = 193/194 (99.48%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60
           MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI
Sbjct: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVFEEE 194
           GIYVSEKGTV EEE
Sbjct: 181 GIYVSEKGTVLEEE 194

[Close]

BLAST of Csor.00g039540 vs. NCBI nr
Match: XP_023551562.1 (60S ribosomal protein L9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 374 bits (960), Expect = 1.98e-130
Identity = 191/194 (98.45%), Postives = 192/194 (98.97%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60
           MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI
Sbjct: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASIT+ NKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVFEEE 194
           GIYVSEKGTV EEE
Sbjct: 181 GIYVSEKGTVVEEE 194

[Close]

BLAST of Csor.00g039540 vs. NCBI nr
Match: KAG6579363.1 (60S ribosomal protein L9, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016849.1 60S ribosomal protein L9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 373 bits (957), Expect = 5.68e-130
Identity = 190/194 (97.94%), Postives = 192/194 (98.97%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60
           MKTILSSETMDIP+GVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASIT+ NKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVFEEE 194
           GIYVSEKGTV EEE
Sbjct: 181 GIYVSEKGTVVEEE 194

[Close]

BLAST of Csor.00g039540 vs. NCBI nr
Match: XP_022922256.1 (60S ribosomal protein L9 [Cucurbita moschata])

HSP 1 Score: 372 bits (954), Expect = 1.63e-129
Identity = 189/194 (97.42%), Postives = 192/194 (98.97%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60
           MKTILSSETMDIP+GVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASIT+ NKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVR+VDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRRVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVFEEE 194
           GIYVSEKGTV EEE
Sbjct: 181 GIYVSEKGTVVEEE 194

[Close]

BLAST of Csor.00g039540 vs. ExPASy TrEMBL
Match: A0A6J1H5L1 (60S ribosomal protein L9-like OS=Cucurbita moschata OX=3662 GN=LOC111459785 PE=3 SV=1)

HSP 1 Score: 381 bits (978), Expect = 1.67e-133
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60
           MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI
Sbjct: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVFEEE 194
           GIYVSEKGTVFEEE
Sbjct: 181 GIYVSEKGTVFEEE 194

[Close]

BLAST of Csor.00g039540 vs. ExPASy TrEMBL
Match: A0A6J1K0L1 (60S ribosomal protein L9-like OS=Cucurbita maxima OX=3661 GN=LOC111491349 PE=3 SV=1)

HSP 1 Score: 379 bits (972), Expect = 1.37e-132
Identity = 193/194 (99.48%), Postives = 193/194 (99.48%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60
           MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI
Sbjct: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVFEEE 194
           GIYVSEKGTV EEE
Sbjct: 181 GIYVSEKGTVLEEE 194

[Close]

BLAST of Csor.00g039540 vs. ExPASy TrEMBL
Match: A0A6J1E3M6 (60S ribosomal protein L9 OS=Cucurbita moschata OX=3662 GN=LOC111430293 PE=3 SV=1)

HSP 1 Score: 372 bits (954), Expect = 7.88e-130
Identity = 189/194 (97.42%), Postives = 192/194 (98.97%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60
           MKTILSSETMDIP+GVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASIT+ NKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVR+VDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRRVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVFEEE 194
           GIYVSEKGTV EEE
Sbjct: 181 GIYVSEKGTVVEEE 194

[Close]

BLAST of Csor.00g039540 vs. ExPASy TrEMBL
Match: A0A5D3C437 (60S ribosomal protein L9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00890 PE=3 SV=1)

HSP 1 Score: 371 bits (952), Expect = 1.53e-129
Identity = 187/194 (96.39%), Postives = 192/194 (98.97%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60
           MKTILSSETMDIP+GVKIKVNAKIIEVEGPRGKL+RNFKHLNLDFQLIT+E+TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEDTGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASIT+ NKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVFEEE 194
           GIYVSEKGTV EEE
Sbjct: 181 GIYVSEKGTVVEEE 194

[Close]

BLAST of Csor.00g039540 vs. ExPASy TrEMBL
Match: E5GBD5 (60S ribosomal protein l9 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 371 bits (952), Expect = 1.53e-129
Identity = 187/194 (96.39%), Postives = 192/194 (98.97%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60
           MKTILSSETMDIP+GVKIKVNAKIIEVEGPRGKL+RNFKHLNLDFQLIT+E+TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEDTGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASIT+ NKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVFEEE 194
           GIYVSEKGTV EEE
Sbjct: 181 GIYVSEKGTVVEEE 194

[Close]

BLAST of Csor.00g039540 vs. TAIR 10
Match: AT1G33120.1 (Ribosomal protein L6 family )

HSP 1 Score: 330.5 bits (846), Expect = 9.2e-91
Identity = 164/194 (84.54%), Postives = 181/194 (93.30%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60
           MKTILSSETMDIP+ V IKV+AK+IEVEGPRGKL+R+FKHLNLDFQLI + ETGKKKLKI
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120
           D+WFG+RKTSA+IRTALSHV+NLI+GVT+G+RYKMRFVYAHFPINASI    KSIEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV+IVRSEKVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTVFEEE 195
           GIYVSEK  + EEE
Sbjct: 181 GIYVSEKSKIVEEE 194

[Close]

BLAST of Csor.00g039540 vs. TAIR 10
Match: AT1G33140.1 (Ribosomal protein L6 family )

HSP 1 Score: 330.5 bits (846), Expect = 9.2e-91
Identity = 164/194 (84.54%), Postives = 181/194 (93.30%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60
           MKTILSSETMDIP+ V IKV+AK+IEVEGPRGKL+R+FKHLNLDFQLI + ETGKKKLKI
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120
           D+WFG+RKTSA+IRTALSHV+NLI+GVT+G+RYKMRFVYAHFPINASI    KSIEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV+IVRSEKVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTVFEEE 195
           GIYVSEK  + EEE
Sbjct: 181 GIYVSEKSKIVEEE 194

[Close]

BLAST of Csor.00g039540 vs. TAIR 10
Match: AT4G10450.1 (Ribosomal protein L6 family )

HSP 1 Score: 325.5 bits (833), Expect = 2.9e-89
Identity = 161/194 (82.99%), Postives = 179/194 (92.27%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60
           MKTILSSETMDIP+GV IKVNAK+IEVEGPRGKL R+FKHLNLDFQLI ++ TGK++LKI
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120
           D+WFGSRKTSA+IRTALSHV+NLI GVT+G+ Y+MRFVYAHFPINASI   NKSIEIRNF
Sbjct: 61  DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV IVRSEKVKDE++L+GNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTVFEEE 195
           GIYVSEKG +  EE
Sbjct: 181 GIYVSEKGKIAVEE 194

The following BLAST results are available for this feature:

BLAST of Csor.00g039540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P30707	1.1e-91	88.66	60S ribosomal protein L9 OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV=1	[more]
P49209	1.3e-89	84.54	60S ribosomal protein L9-1 OS=Arabidopsis thaliana OX=3702 GN=RPL9B PE=1 SV=3	[more]
Q9SZX9	4.1e-88	82.99	60S ribosomal protein L9-2 OS=Arabidopsis thaliana OX=3702 GN=RPL9D PE=2 SV=1	[more]
P49210	8.7e-86	81.35	60S ribosomal protein L9 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL9 PE=2 S...	[more]
Q90YW0	2.0e-58	59.28	60S ribosomal protein L9 OS=Ictalurus punctatus OX=7998 GN=rpl9 PE=2 SV=1	[more]

BLAST of Csor.00g039540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958609.1	3.44e-133	100.00	60S ribosomal protein L9-like [Cucurbita moschata] >XP_023532091.1 60S ribosomal...	[more]
XP_022996012.1	2.83e-132	99.48	60S ribosomal protein L9-like [Cucurbita maxima]	[more]
XP_023551562.1	1.98e-130	98.45	60S ribosomal protein L9-like [Cucurbita pepo subsp. pepo]	[more]
KAG6579363.1	5.68e-130	97.94	60S ribosomal protein L9, partial [Cucurbita argyrosperma subsp. sororia] >KAG70...	[more]
XP_022922256.1	1.63e-129	97.42	60S ribosomal protein L9 [Cucurbita moschata]	[more]

BLAST of Csor.00g039540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H5L1	1.67e-133	100.00	60S ribosomal protein L9-like OS=Cucurbita moschata OX=3662 GN=LOC111459785 PE=3...	[more]
A0A6J1K0L1	1.37e-132	99.48	60S ribosomal protein L9-like OS=Cucurbita maxima OX=3661 GN=LOC111491349 PE=3 S...	[more]
A0A6J1E3M6	7.88e-130	97.42	60S ribosomal protein L9 OS=Cucurbita moschata OX=3662 GN=LOC111430293 PE=3 SV=1	[more]
A0A5D3C437	1.53e-129	96.39	60S ribosomal protein L9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
E5GBD5	1.53e-129	96.39	60S ribosomal protein l9 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]

BLAST of Csor.00g039540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33120.1	9.2e-91	84.54	Ribosomal protein L6 family	[more]
AT1G33140.1	9.2e-91	84.54	Ribosomal protein L6 family	[more]
AT4G10450.1	2.9e-89	82.99	Ribosomal protein L6 family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000702	Ribosomal protein L6	PIRSF	PIRSF002162	RPL6p_RPL6a_RPL9e_RPL9o	coord: 1..190 e-value: 1.8E-31 score: 106.9
IPR000702	Ribosomal protein L6	PANTHER	PTHR11655	60S/50S RIBOSOMAL PROTEIN L6/L9	coord: 1..194
IPR020040	Ribosomal protein L6, alpha-beta domain	PFAM	PF00347	Ribosomal_L6	coord: 12..90 e-value: 1.2E-11 score: 45.2 coord: 105..181 e-value: 5.5E-12 score: 46.2
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 1..90 e-value: 1.0E-29 score: 104.8
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 91..194 e-value: 1.1E-51 score: 175.2
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 91..187
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 1..90
None	No IPR available	PANTHER	PTHR11655:SF40	60S RIBOSOMAL PROTEIN L9-LIKE	coord: 1..194
IPR002359	Ribosomal protein L6, conserved site-2	PROSITE	PS00700	RIBOSOMAL_L6_2	coord: 166..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g039540.m01	Csor.00g039540.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome