Csor.00g039510 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g039510
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	RNA-binding protein pno1-like
Location	Csor_Chr02: 6735125 .. 6735799 (+)
RNA-Seq Expression	Csor.00g039510
Synteny	Csor.00g039510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTCTACTGAAGTCCCCATCTCCATGGAAGTGGAAGCAGTTCCAAGTAAATCGACAACTGAAGTCGGCATCTTGCCTCCAAAACCACTGTTTGAACCTCTAAAGCCTCATGAAATGAATGATGGCCGAGTTCAGTTCCGGAAGGTATCTGTTCCTCCACATCGCTATTCTCCTCTCAAGAAAGCATGGATGGAGATCTACACCCCAATATACGAGCAGATGAAAATCGACATCCGTATGAACCTCAAAGCTCGTAAAGTCGAACTGAAAACCAGAGCAGACACACCAGACATCAGTAACTTGCAAAAGTGTGCAGATTTTGTCCATGCCTTCATGCTGGGTTTTGATATAATTGACGCCATTGCACTCTTACGAGTGGATGAACTCTACGTAGAATCTTTCGAGATTAAAGATGTTAAAACACTTCGAGGTGAGCATTTGTCCCGTGCCATAGGCCGATTGTCTGGTAAAGCTGGAAAAACTAAGTTCGCCATTGAAAATGCTACAAAGACGAGGATAGTCATTGCAGACACCAAGATTCACATATTAGGATCCTTTGCCAACATCAAAATTGCTAGAGATTCTCTTTGCAGCCTCATTTTAGGTTCCCCTGCAGGTAAAGTTTATTCGAAATTAAGAGCAGTTACTGCTAGATTGGCTGAAAGGTTTTGA

mRNA sequence

ATGCAGTCTACTGAAGTCCCCATCTCCATGGAAGTGGAAGCAGTTCCAAGTAAATCGACAACTGAAGTCGGCATCTTGCCTCCAAAACCACTGTTTGAACCTCTAAAGCCTCATGAAATGAATGATGGCCGAGTTCAGTTCCGGAAGGTATCTGTTCCTCCACATCGCTATTCTCCTCTCAAGAAAGCATGGATGGAGATCTACACCCCAATATACGAGCAGATGAAAATCGACATCCGTATGAACCTCAAAGCTCGTAAAGTCGAACTGAAAACCAGAGCAGACACACCAGACATCAGTAACTTGCAAAAGTGTGCAGATTTTGTCCATGCCTTCATGCTGGGTTTTGATATAATTGACGCCATTGCACTCTTACGAGTGGATGAACTCTACGTAGAATCTTTCGAGATTAAAGATGTTAAAACACTTCGAGGTGAGCATTTGTCCCGTGCCATAGGCCGATTGTCTGGTAAAGCTGGAAAAACTAAGTTCGCCATTGAAAATGCTACAAAGACGAGGATAGTCATTGCAGACACCAAGATTCACATATTAGGATCCTTTGCCAACATCAAAATTGCTAGAGATTCTCTTTGCAGCCTCATTTTAGGTTCCCCTGCAGGTAAAGTTTATTCGAAATTAAGAGCAGTTACTGCTAGATTGGCTGAAAGGTTTTGA

Coding sequence (CDS)

ATGCAGTCTACTGAAGTCCCCATCTCCATGGAAGTGGAAGCAGTTCCAAGTAAATCGACAACTGAAGTCGGCATCTTGCCTCCAAAACCACTGTTTGAACCTCTAAAGCCTCATGAAATGAATGATGGCCGAGTTCAGTTCCGGAAGGTATCTGTTCCTCCACATCGCTATTCTCCTCTCAAGAAAGCATGGATGGAGATCTACACCCCAATATACGAGCAGATGAAAATCGACATCCGTATGAACCTCAAAGCTCGTAAAGTCGAACTGAAAACCAGAGCAGACACACCAGACATCAGTAACTTGCAAAAGTGTGCAGATTTTGTCCATGCCTTCATGCTGGGTTTTGATATAATTGACGCCATTGCACTCTTACGAGTGGATGAACTCTACGTAGAATCTTTCGAGATTAAAGATGTTAAAACACTTCGAGGTGAGCATTTGTCCCGTGCCATAGGCCGATTGTCTGGTAAAGCTGGAAAAACTAAGTTCGCCATTGAAAATGCTACAAAGACGAGGATAGTCATTGCAGACACCAAGATTCACATATTAGGATCCTTTGCCAACATCAAAATTGCTAGAGATTCTCTTTGCAGCCTCATTTTAGGTTCCCCTGCAGGTAAAGTTTATTCGAAATTAAGAGCAGTTACTGCTAGATTGGCTGAAAGGTTTTGA

Protein sequence

MQSTEVPISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIIDAIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF

Homology

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BLAST of Csor.00g039510 vs. ExPASy Swiss-Prot
Match: Q9VR89 (RNA-binding protein pno1 OS=Drosophila melanogaster OX=7227 GN=l(1)G0004 PE=2 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 3.9e-66
Identity = 122/187 (65.24%), Postives = 156/187 (83.42%), Query Frame = 0


Query: 37  PHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADT 96
           P +    R + RKVSVPPHRYS LK+ WM+I+TP+ E MK+ IR N+KAR+VEL+   +T
Sbjct: 53  PPKAKRARSELRKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGPET 112

Query: 97  PDISNLQKCADFVHAFMLGFDIIDAIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLS 156
           PDI+NLQ+ ADFV AF+ GF++ DA+ALLR+++L+VESFEIKDVKTLRG+H SRAIGRL+
Sbjct: 113 PDIANLQRGADFVRAFLCGFEVDDALALLRLEDLFVESFEIKDVKTLRGDHQSRAIGRLA 172

Query: 157 GKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAV 216
           GK G+TKF IEN TKTRIV+AD+KIHILGS+ NI++AR ++C+LILGSP  KVY  LRAV
Sbjct: 173 GKGGRTKFTIENVTKTRIVLADSKIHILGSYQNIQLARRAVCNLILGSPPSKVYGNLRAV 232

Query: 217 TARLAER 224
            +RL+ER
Sbjct: 233 ASRLSER 239

[Close]

BLAST of Csor.00g039510 vs. ExPASy Swiss-Prot
Match: Q29IG6 (RNA-binding protein pno1 OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=l(1)G0004 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 4.4e-65
Identity = 119/178 (66.85%), Postives = 153/178 (85.96%), Query Frame = 0


Query: 46  QFRKVSVPPHRYSPLKKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKC 105
           + RKVSVPPHRYS LK+ WM+I+TP+ E MK+ IR N+KAR+VEL+   +TPDI+NLQK 
Sbjct: 60  ELRKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGPETPDIANLQKG 119

Query: 106 ADFVHAFMLGFDIIDAIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFA 165
           ADFV AF+ GF++ DA+ALLR+++L+VE+FEIKDVKTLRG+H SRAIGRL+GK G+TKF 
Sbjct: 120 ADFVKAFLCGFEVDDALALLRLEDLFVETFEIKDVKTLRGDHQSRAIGRLAGKGGRTKFT 179

Query: 166 IENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAER 224
           IEN TKTRIV+AD+KIHILGS+ NI++AR ++C+LILGSP  KVY  LR+V +RL+ER
Sbjct: 180 IENVTKTRIVLADSKIHILGSYQNIQLARRAICNLILGSPPSKVYGNLRSVASRLSER 237

[Close]

BLAST of Csor.00g039510 vs. ExPASy Swiss-Prot
Match: A7RP64 (RNA-binding protein pno1 OS=Nematostella vectensis OX=45351 GN=pno1 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 5.7e-65
Identity = 118/196 (60.20%), Postives = 157/196 (80.10%), Query Frame = 0


Query: 29  KPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYEQMKIDIRMNLKARKV 88
           +P F P+K  ++  G+ + RK+ VP HRY+PLK+ WM+I+TP+ E +K+ IR NL +R V
Sbjct: 43  RPSFPPVKAQKLAGGKSETRKIPVPSHRYTPLKENWMKIFTPVVEHLKLQIRFNLGSRHV 102

Query: 89  ELKTRADTPDISNLQKCADFVHAFMLGFDIIDAIALLRVDELYVESFEIKDVKTLRGEHL 148
           E++   +T DI  +QK ADFV AF+LGF++ DA+AL+R+D+L++ESFEI DVK L+G+HL
Sbjct: 103 EIRASKETSDIGAVQKAADFVQAFILGFEVEDALALIRLDDLFLESFEIADVKPLKGDHL 162

Query: 149 SRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGK 208
           SRAIGR++GK GKTKF IEN TKTRIV+A+TKIHILGSF NIKIAR ++C+LILGSP  K
Sbjct: 163 SRAIGRVAGKGGKTKFTIENVTKTRIVLAETKIHILGSFQNIKIARTAICNLILGSPPSK 222

Query: 209 VYSKLRAVTARLAERF 225
           VY  +RAV +R AERF
Sbjct: 223 VYGNMRAVASRSAERF 238

[Close]

BLAST of Csor.00g039510 vs. ExPASy Swiss-Prot
Match: Q5F414 (RNA-binding protein PNO1 OS=Gallus gallus OX=9031 GN=PNO1 PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 4.8e-64
Identity = 122/209 (58.37%), Postives = 161/209 (77.03%), Query Frame = 0


Query: 17  SKSTTEVGILPPK-PLFEPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYEQM 76
           ++S    G  P K P F PL    +  G+ + RKV VP +RY+PLK+ WM+I+TPI E +
Sbjct: 34  AESAEAAGPQPSKRPAFPPLPAAALGVGKGEVRKVPVPANRYTPLKENWMKIFTPIVEHL 93

Query: 77  KIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIIDAIALLRVDELYVESF 136
           ++ IR NLK R VE+KT ++T D+S L K ADFV AF+LGF + DA+AL+R+D+L++ESF
Sbjct: 94  QLQIRFNLKTRNVEIKTCSETKDLSALTKAADFVKAFILGFQVEDALALIRLDDLFLESF 153

Query: 137 EIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARD 196
           E+ DVK L+G+HLSRAIGR++GK GKTKF IEN T+TRIV+AD+KIHILGSF NIK+AR 
Sbjct: 154 EVTDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVTRTRIVLADSKIHILGSFQNIKMART 213

Query: 197 SLCSLILGSPAGKVYSKLRAVTARLAERF 225
           ++C+LILGSP  KVY  +RAV +R AERF
Sbjct: 214 AICNLILGSPPSKVYGNIRAVASRAAERF 242

[Close]

BLAST of Csor.00g039510 vs. ExPASy Swiss-Prot
Match: Q1DQZ5 (Pre-rRNA-processing protein PNO1 OS=Coccidioides immitis (strain RS) OX=246410 GN=PNO1 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.4e-63
Identity = 122/198 (61.62%), Postives = 154/198 (77.78%), Query Frame = 0


Query: 29  KPLFEPLKPHEMNDG--RVQFRKVSVPPHRYSPLKKAWMEIYTPIYEQMKIDIRMNLKAR 88
           +PLF P+      DG  R++ RKV VPPHR SPLK AW +IY P+ E +K+ +RMN+K++
Sbjct: 61  RPLFTPI---TATDGAYRIENRKVPVPPHRMSPLKAAWPKIYPPLVEHLKLQVRMNIKSK 120

Query: 89  KVELKTRADTPDISNLQKCADFVHAFMLGFDIIDAIALLRVDELYVESFEIKDVKTLRGE 148
            VEL+T  +T D   LQK  DF+ AF LGFD+ DAIALLR+D+LY+E+FEIKDVK L GE
Sbjct: 121 AVELRTSKNTTDTGALQKGEDFIKAFTLGFDVDDAIALLRLDDLYIETFEIKDVKPLNGE 180

Query: 149 HLSRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPA 208
           HL RAIGR++GK GKTKFAIENA++TR+V+AD KIHILG F NI+IAR+++ SLILGSP 
Sbjct: 181 HLGRAIGRIAGKDGKTKFAIENASRTRVVLADQKIHILGGFRNIRIAREAIVSLILGSPP 240

Query: 209 GKVYSKLRAVTARLAERF 225
           GKVY  LR V +R+ ERF
Sbjct: 241 GKVYGNLRTVASRMKERF 255

[Close]

BLAST of Csor.00g039510 vs. NCBI nr
Match: XP_022958607.1 (RNA-binding protein pno1-like [Cucurbita moschata] >XP_022958608.1 RNA-binding protein pno1-like [Cucurbita moschata] >KAG6605749.1 RNA-binding protein pno1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035653.1 RNA-binding protein pno1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 437 bits (1123), Expect = 2.67e-154
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   MQSTEVPISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVPISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120
           KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Csor.00g039510 vs. NCBI nr
Match: XP_022995381.1 (RNA-binding protein pno1-like [Cucurbita maxima] >XP_022995382.1 RNA-binding protein pno1-like [Cucurbita maxima] >XP_022995383.1 RNA-binding protein pno1-like [Cucurbita maxima] >XP_023532898.1 RNA-binding protein pno1-like [Cucurbita pepo subsp. pepo] >XP_023532899.1 RNA-binding protein pno1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 434 bits (1117), Expect = 2.19e-153
Identity = 223/224 (99.55%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MQSTEVPISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVPISMEVEAVPSKS TEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPISMEVEAVPSKSITEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120
           KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Csor.00g039510 vs. NCBI nr
Match: XP_038874451.1 (RNA-binding protein pno1-like [Benincasa hispida])

HSP 1 Score: 423 bits (1088), Expect = 5.78e-149
Identity = 215/224 (95.98%), Postives = 220/224 (98.21%), Query Frame = 0


Query: 1   MQSTEVPISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVPISMEVEAV SK+ TEVG LPPKP F+PLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPISMEVEAVSSKTATEVGTLPPKPKFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120
           KKAWMEIYTPIY+QMKID+RMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFD+ID
Sbjct: 61  KKAWMEIYTPIYDQMKIDVRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Csor.00g039510 vs. NCBI nr
Match: XP_004145908.1 (RNA-binding protein pno1 [Cucumis sativus] >KGN49911.1 hypothetical protein Csa_000276 [Cucumis sativus])

HSP 1 Score: 421 bits (1082), Expect = 4.75e-148
Identity = 212/224 (94.64%), Postives = 219/224 (97.77%), Query Frame = 0


Query: 1   MQSTEVPISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVP+SMEVE V SK+ TE+G LPPKP F+PLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPVSMEVETVSSKTVTEIGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120
           KKAWMEIYTPIY+QMKIDIRMNLKARKVELKTRADTPD+SNLQKCADFVHAFMLGFD+ID
Sbjct: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDVSNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Csor.00g039510 vs. NCBI nr
Match: XP_008437547.1 (PREDICTED: RNA-binding protein pno1-like [Cucumis melo] >XP_016903508.1 PREDICTED: RNA-binding protein pno1-like [Cucumis melo])

HSP 1 Score: 421 bits (1081), Expect = 6.74e-148
Identity = 213/224 (95.09%), Postives = 219/224 (97.77%), Query Frame = 0


Query: 1   MQSTEVPISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVP+SMEVE V SK+ TEVG +PPKP FEPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPVSMEVETVSSKTVTEVGTMPPKPQFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120
           KKAWMEIYTPIY+QMKIDIRMNLKARKVELKTRA+TPDISNLQKCADFVHAFMLGFD+ID
Sbjct: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRAETPDISNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Csor.00g039510 vs. ExPASy TrEMBL
Match: A0A6J1H2A3 (RNA-binding protein pno1-like OS=Cucurbita moschata OX=3662 GN=LOC111459784 PE=3 SV=1)

HSP 1 Score: 437 bits (1123), Expect = 1.29e-154
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   MQSTEVPISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVPISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120
           KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Csor.00g039510 vs. ExPASy TrEMBL
Match: A0A6J1K1S8 (RNA-binding protein pno1-like OS=Cucurbita maxima OX=3661 GN=LOC111490946 PE=3 SV=1)

HSP 1 Score: 434 bits (1117), Expect = 1.06e-153
Identity = 223/224 (99.55%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MQSTEVPISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVPISMEVEAVPSKS TEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPISMEVEAVPSKSITEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120
           KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Csor.00g039510 vs. ExPASy TrEMBL
Match: A0A0A0KQC5 (KH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G139880 PE=3 SV=1)

HSP 1 Score: 421 bits (1082), Expect = 2.30e-148
Identity = 212/224 (94.64%), Postives = 219/224 (97.77%), Query Frame = 0


Query: 1   MQSTEVPISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVP+SMEVE V SK+ TE+G LPPKP F+PLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPVSMEVETVSSKTVTEIGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120
           KKAWMEIYTPIY+QMKIDIRMNLKARKVELKTRADTPD+SNLQKCADFVHAFMLGFD+ID
Sbjct: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDVSNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Csor.00g039510 vs. ExPASy TrEMBL
Match: A0A1S3AUA6 (RNA-binding protein pno1-like OS=Cucumis melo OX=3656 GN=LOC103482927 PE=3 SV=1)

HSP 1 Score: 421 bits (1081), Expect = 3.27e-148
Identity = 213/224 (95.09%), Postives = 219/224 (97.77%), Query Frame = 0


Query: 1   MQSTEVPISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVP+SMEVE V SK+ TEVG +PPKP FEPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPVSMEVETVSSKTVTEVGTMPPKPQFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120
           KKAWMEIYTPIY+QMKIDIRMNLKARKVELKTRA+TPDISNLQKCADFVHAFMLGFD+ID
Sbjct: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRAETPDISNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Csor.00g039510 vs. ExPASy TrEMBL
Match: A0A5D3C450 (RNA-binding protein pno1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00840 PE=3 SV=1)

HSP 1 Score: 421 bits (1081), Expect = 5.81e-148
Identity = 213/224 (95.09%), Postives = 219/224 (97.77%), Query Frame = 0


Query: 1   MQSTEVPISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVP+SMEVE V SK+ TEVG +PPKP FEPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 17  MQSTEVPVSMEVETVSSKTVTEVGTMPPKPQFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 76

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120
           KKAWMEIYTPIY+QMKIDIRMNLKARKVELKTRA+TPDISNLQKCADFVHAFMLGFD+ID
Sbjct: 77  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRAETPDISNLQKCADFVHAFMLGFDVID 136

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 137 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 196

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 197 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 240

[Close]

BLAST of Csor.00g039510 vs. TAIR 10
Match: AT3G13230.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 344.7 bits (883), Expect = 5.4e-95
Identity = 174/213 (81.69%), Postives = 196/213 (92.02%), Query Frame = 0


Query: 10  MEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYT 69
           MEVE     +T     LPPKP F+PLK HEM+DG+VQFRK++VPP+RYSPLKKAW++IYT
Sbjct: 7   MEVET----ATEGTVPLPPKPTFKPLKAHEMSDGKVQFRKIAVPPNRYSPLKKAWLDIYT 66

Query: 70  PIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIIDAIALLRVDE 129
           PIY+QMK+DIRMNLKARKVELKTRADTPDISNLQK ADFVHAFMLGFDI DAI+LLR+DE
Sbjct: 67  PIYDQMKVDIRMNLKARKVELKTRADTPDISNLQKSADFVHAFMLGFDIPDAISLLRMDE 126

Query: 130 LYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFAN 189
           LYVESFEIKDVKTL+GEHLSRAIGRLSGK GKTKFAIEN+TKTRIVIADT+IHILG+F+N
Sbjct: 127 LYVESFEIKDVKTLKGEHLSRAIGRLSGKGGKTKFAIENSTKTRIVIADTRIHILGAFSN 186

Query: 190 IKIARDSLCSLILGSPAGKVYSKLRAVTARLAE 223
           IK+AR SLCSLI+GSPAGKVYSKLR+V+ARL E
Sbjct: 187 IKVARSSLCSLIMGSPAGKVYSKLRSVSARLNE 215

The following BLAST results are available for this feature:

BLAST of Csor.00g039510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9VR89	3.9e-66	65.24	RNA-binding protein pno1 OS=Drosophila melanogaster OX=7227 GN=l(1)G0004 PE=2 SV...	[more]
Q29IG6	4.4e-65	66.85	RNA-binding protein pno1 OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=l...	[more]
A7RP64	5.7e-65	60.20	RNA-binding protein pno1 OS=Nematostella vectensis OX=45351 GN=pno1 PE=3 SV=1	[more]
Q5F414	4.8e-64	58.37	RNA-binding protein PNO1 OS=Gallus gallus OX=9031 GN=PNO1 PE=2 SV=1	[more]
Q1DQZ5	1.4e-63	61.62	Pre-rRNA-processing protein PNO1 OS=Coccidioides immitis (strain RS) OX=246410 G...	[more]

BLAST of Csor.00g039510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958607.1	2.67e-154	100.00	RNA-binding protein pno1-like [Cucurbita moschata] >XP_022958608.1 RNA-binding p...	[more]
XP_022995381.1	2.19e-153	99.55	RNA-binding protein pno1-like [Cucurbita maxima] >XP_022995382.1 RNA-binding pro...	[more]
XP_038874451.1	5.78e-149	95.98	RNA-binding protein pno1-like [Benincasa hispida]	[more]
XP_004145908.1	4.75e-148	94.64	RNA-binding protein pno1 [Cucumis sativus] >KGN49911.1 hypothetical protein Csa_...	[more]
XP_008437547.1	6.74e-148	95.09	PREDICTED: RNA-binding protein pno1-like [Cucumis melo] >XP_016903508.1 PREDICTE...	[more]

BLAST of Csor.00g039510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H2A3	1.29e-154	100.00	RNA-binding protein pno1-like OS=Cucurbita moschata OX=3662 GN=LOC111459784 PE=3...	[more]
A0A6J1K1S8	1.06e-153	99.55	RNA-binding protein pno1-like OS=Cucurbita maxima OX=3661 GN=LOC111490946 PE=3 S...	[more]
A0A0A0KQC5	2.30e-148	94.64	KH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G139880 PE=3 SV=...	[more]
A0A1S3AUA6	3.27e-148	95.09	RNA-binding protein pno1-like OS=Cucumis melo OX=3656 GN=LOC103482927 PE=3 SV=1	[more]
A0A5D3C450	5.81e-148	95.09	RNA-binding protein pno1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of Csor.00g039510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13230.1	5.4e-95	81.69	RNA-binding KH domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 129..202 e-value: 1.7E-4 score: 31.0
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 128..224 e-value: 1.1E-22 score: 81.9
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 129..223
None	No IPR available	PANTHER	PTHR12826	RIBONUCLEASE Y	coord: 11..224
IPR039912	Pre-rRNA-processing protein PNO1-like	PANTHER	PTHR12826:SF13	RNA-BINDING PROTEIN PNO1	coord: 11..224

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g039510.m01	Csor.00g039510.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding