Csor.00g039390 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATAAAACTGTTGCGGAATCCAAACTATGCACAGACTCTAGGCGCATTCTCTTCGATCGTCGCTACGGTTGGGTGTTAGTATCTCTCGATTTCAGCTCACTGTCTGTAAATTCGTAATTTGGATTTTGAGGATGTTTTCCTTTGTTTTGCAGGATTGATGAATGGAAAAATCCTTCGGAAGAAGCTTTGGCCGGTGGCCGAGGAATGTATGTGTGTTTCTTTGCGTTCATTGTTCGTAAGCGTTGGCTGTCGTGCTTTCTGTTGTTTCGATTTTCAGTTCTCAAAGATTGAGAGAGGCTTCTTTTTCGATTTGTGCTTTATGACAAAAGTAGTTTCGATTTTTCGTTTCTCAAGTACATTTGTGCTTTCTCTTTGCTTTTTGAATATTTATTGTTTCCGATTAGCTTACTCAAGCTTCTTGTTTACCAAGCAGATGATAGCAATTTTAGATTGGCGTCCTGATCGTTTCTTATCTTTTTTAGGTTTTGCATTGCGCCCCTCGCGAAAACGCTGGTTAATTCAGTCGCGCAGATGGTATGGCTCTAATCTTATCCACCGTTGATTATTGTTTTTGTTTTTAATTTTCTCTCTCTTTGAAAAATAAACGATTGGATTAGATCAAAATTGGTGAACAAAAATGGAGGAAGAGGAAACTTCCCATCTAGTAAACTTTTAGGAAAAGAACTTCACGCAATCAATGTTTATGAAATTGAAATTGTAAATGTGAGATCCCACGCTGGTTGGAGAGGAGAACGAAGCATTCCTTATAAGGGTGTGGAAACCTCTCCTTAGTAGATGCATTTTAAAATCGTGAGGCGTCAGGCGATACATAATGGGCTAAAACGGACAATATCTGCTAGCGATGGCTTGGATTGTTACAGGAACCCTGTGGTTTGATAGAGTTTGGGGTGTGTGGGGTACACAGATCTTGTGAGGCATTGATTCTTCAATGAAAATAGTTATTCAGTGTTGTGTTTAAGTATGTAAAGCTAAGTTCAGAGACTGTTGGGAAGTTTCAAAATCCATTGTTTAATAAGTTATTGGAGTGCTTTAGCTTGTTCTGGTTTGTTAGTTTTGATTCATTCTGTTGCTTCTTCCTTTTCTATTATTCTTTTGTACCCCGAGCTTGAGACCTGATGCATACTTTTGTTGTGTTTGTTAATAAGAAAACTACTCATTAAGAAGGGTGAAAGAATTCGATGGAAGTGACCCGAAAAAACATCACTTGCTTAGTTGACTAAGGGTAAGGTAGTCGGAATTATCCACTCATAGCACGATGAAATTGTCCGATTAGCTGTTCTTGGCGTTTAGGTAGCTAGTGCTATGGAACTCATGTGCAGTGAGAGATTTAGTAACTCTTCCATGCTCGTAGGTTGACTTCCCTATGCATCCATAATGCCCTAACTTACCAACAAAGGAGCAACCAAGAGGCCAAATTAAAATTGCTAGAAGGAGCTCCAATAGTTGAGCTATTAAGGAAAGAGGAAGATTACAAAGAAGATAACTCATACAATGTCATGGAAACCTGCTTGTCTAATAATCTTCCCCTACGCTTTATAATACACAAAAGTTCGCCAATCTCCAGCCTTGACTAGTGGTTTAGAGCAAGAGAACAAAGCAAAAAGAGATGATTTTGTTAAGACTGTCAACTGTAAAAATGTGTACTATGAGGGGTTAAAAGGGGAATGCAACTCCTACAAGTTATTTCTATAAATTCTATTAGTTAGTTTGCTCACGTTTTGAGAATGTAACTCTAACGACTCAAGCTCACTGCTAGCAGATATTGTCTTTTTGGACTTTTCCTCTCTAGCGCCCCCTCAAGGTTTTTAAAATGCGTCTGCTGTGAGAGGGTCTAGCGCTATTCCAACCAGTGCCTCTCACCGTTCGGTGACTGGCTTTGATACCATTTGTAACAGCCCAATCCCACCGCTATATAAAACTGTGAGACTAACAGCAATACATAACGGCCCAAAACGGATAATATTTGCTAGCGGTGGGCTTGATCTGTTACAGTATCCTCCCTTGGACAAAGATCAAGCAGGAGGGAAATAAGTGGTTTTAATATCAGTTAAAGAACCACCCACGTTCTAATCTTCTTTTGGATGAACACTTTTGGATGAACACTTGGAGCAACTAACTACTAAAAACCCTCCCCTTCTTGGGGATCTTGACCTTGAATTTCACAAAACCATTTAAAATAGAGAATTTTACGTGTTGTTGCCCCCTCAATGCTCTCCAATTGATCATGCTTCTCCCGGGGCCTGGGATATTTTGGAGTGAATTATTTCTAATTTCGACTATGATTTTGGATGTAATAGCCCAAACCGATAATATTGTCTTCTTTAGGTTTTACCTTTCGGGCTTTCCTTAAGGTTTTAAAACGCGTCTGCTAAGGAGAGAGGTTTCCACATCCTTATAAAGAATACTTCGTTCTCCTCCCCAACTGACGTGGGATCTCACAATCCACACCCCCCTTCAGGACCCAACGTCCTCGCGGACACTCGTTCCCTTCTCCAATCGATGTAGGACCCCCCAATCCACCCCTTTGGGGCCTGGCACACCGCCTTGTGTCCACCCCCTTTGGAGCTCAGCCTTCTTGCTGACACATTGTCCAGTATTTAGCTCTAATACCATTTGTAACAGCCCAAGCCCGCCGCTAGCAAATATTTCCCTCTTTGGGCTTTCCCTTCCAGGTCTTAAAACACTTCTGTCAGGGAGAGGTTTCCACACTCTTATAAAAAAATGTTTCATTCTCCTCCCCGACGGATGTGGGATCTCACATTGGATGTTTTCAGAAAATAACATTTGAATTAAAGAGCGGGTTGCCCGACCCTTTCCTCCAATTCTCATGATCCTCCTTTCGTTGCAGGTTAATATTGCTGCAACATCCACAGTTAAAGCTCTTGAAAACCCAGAGCTACTCTCACCTCAGGTACTACAAGCAGGTCTGCATCAAAGGCTTGAGAAATTCATGTCGTCCATGCAATACCCAGCATTCCGCCATGGCTTCCACAAAGTAACTTCTCCTTCAGTTTCCACTAGCTCCTTGCATTTACAGGATGAAAGAGTTGATCACAGCTAG ATGGATAAAACTGTTGCGGAATCCAAACTATGCACAGACTCTAGGCGCATTCTCTTCGATCGTCGCTACGGTTGGGTGATTGATGAATGGAAAAATCCTTCGGAAGAAGCTTTGGCCGGTGGCCGAGGAATGTTTTGCATTGCGCCCCTCGCGAAAACGCTGGTTAATTCAGTCGCGCAGATGGTTAATATTGCTGCAACATCCACAGTTAAAGCTCTTGAAAACCCAGAGCTACTCTCACCTCAGGTACTACAAGCAGGTCTGCATCAAAGGCTTGAGAAATTCATGTCGTCCATGCAATACCCAGCATTCCGCCATGGCTTCCACAAAGTAACTTCTCCTTCAGTTTCCACTAGCTCCTTGCATTTACAGGATGAAAGAGTTGATCACAGCTAG ATGGATAAAACTGTTGCGGAATCCAAACTATGCACAGACTCTAGGCGCATTCTCTTCGATCGTCGCTACGGTTGGGTGATTGATGAATGGAAAAATCCTTCGGAAGAAGCTTTGGCCGGTGGCCGAGGAATGTTTTGCATTGCGCCCCTCGCGAAAACGCTGGTTAATTCAGTCGCGCAGATGGTTAATATTGCTGCAACATCCACAGTTAAAGCTCTTGAAAACCCAGAGCTACTCTCACCTCAGGTACTACAAGCAGGTCTGCATCAAAGGCTTGAGAAATTCATGTCGTCCATGCAATACCCAGCATTCCGCCATGGCTTCCACAAAGTAACTTCTCCTTCAGTTTCCACTAGCTCCTTGCATTTACAGGATGAAAGAGTTGATCACAGCTAG MDKTVAESKLCTDSRRILFDRRYGWVIDEWKNPSEEALAGGRGMFCIAPLAKTLVNSVAQMVNIAATSTVKALENPELLSPQVLQAGLHQRLEKFMSSMQYPAFRHGFHKVTSPSVSTSSLHLQDERVDHS Homology
BLAST of Csor.00g039390 vs. NCBI nr
Match: KAG6592354.1 (hypothetical protein SDJN03_14700, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 263 bits (672), Expect = 1.36e-88 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of Csor.00g039390 vs. NCBI nr
Match: XP_022925399.1 (uncharacterized protein LOC111432700 [Cucurbita moschata]) HSP 1 Score: 256 bits (653), Expect = 1.08e-85 Identity = 126/131 (96.18%), Postives = 128/131 (97.71%), Query Frame = 0
BLAST of Csor.00g039390 vs. NCBI nr
Match: XP_023535526.1 (uncharacterized protein LOC111796939 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023535527.1 uncharacterized protein LOC111796939 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 250 bits (639), Expect = 1.47e-83 Identity = 122/131 (93.13%), Postives = 126/131 (96.18%), Query Frame = 0
BLAST of Csor.00g039390 vs. NCBI nr
Match: KAG7025168.1 (hypothetical protein SDJN02_13991 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 249 bits (636), Expect = 4.08e-83 Identity = 127/131 (96.95%), Postives = 127/131 (96.95%), Query Frame = 0
BLAST of Csor.00g039390 vs. NCBI nr
Match: XP_022973473.1 (uncharacterized protein LOC111472022 [Cucurbita maxima]) HSP 1 Score: 248 bits (633), Expect = 1.21e-82 Identity = 121/131 (92.37%), Postives = 126/131 (96.18%), Query Frame = 0
BLAST of Csor.00g039390 vs. ExPASy TrEMBL
Match: A0A6J1EC20 (uncharacterized protein LOC111432700 OS=Cucurbita moschata OX=3662 GN=LOC111432700 PE=4 SV=1) HSP 1 Score: 256 bits (653), Expect = 5.22e-86 Identity = 126/131 (96.18%), Postives = 128/131 (97.71%), Query Frame = 0
BLAST of Csor.00g039390 vs. ExPASy TrEMBL
Match: A0A6J1ID54 (uncharacterized protein LOC111472022 OS=Cucurbita maxima OX=3661 GN=LOC111472022 PE=4 SV=1) HSP 1 Score: 248 bits (633), Expect = 5.86e-83 Identity = 121/131 (92.37%), Postives = 126/131 (96.18%), Query Frame = 0
BLAST of Csor.00g039390 vs. ExPASy TrEMBL
Match: A0A0A0KUT1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G649290 PE=4 SV=1) HSP 1 Score: 194 bits (494), Expect = 7.49e-62 Identity = 96/120 (80.00%), Postives = 105/120 (87.50%), Query Frame = 0
BLAST of Csor.00g039390 vs. ExPASy TrEMBL
Match: A0A1S3CAM7 (uncharacterized protein LOC103498670 OS=Cucumis melo OX=3656 GN=LOC103498670 PE=4 SV=1) HSP 1 Score: 192 bits (489), Expect = 4.33e-61 Identity = 95/120 (79.17%), Postives = 106/120 (88.33%), Query Frame = 0
BLAST of Csor.00g039390 vs. ExPASy TrEMBL
Match: A0A6J1IB95 (uncharacterized protein LOC111471949 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111471949 PE=4 SV=1) HSP 1 Score: 187 bits (475), Expect = 5.70e-59 Identity = 96/130 (73.85%), Postives = 105/130 (80.77%), Query Frame = 0
BLAST of Csor.00g039390 vs. TAIR 10
Match: AT2G21195.1 (unknown protein; Has 28 Blast hits to 28 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 89.4 bits (220), Expect = 2.4e-18 Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 0
BLAST of Csor.00g039390 vs. TAIR 10
Match: AT2G21195.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 62.0 bits (149), Expect = 4.1e-10 Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 0
BLAST of Csor.00g039390 vs. TAIR 10
Match: AT2G21195.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 61.6 bits (148), Expect = 5.4e-10 Identity = 25/48 (52.08%), Postives = 37/48 (77.08%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|