Csor.00g038840 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g038840
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr13: 2622859 .. 2625567 (+)
RNA-Seq ExpressionCsor.00g038840
SyntenyCsor.00g038840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTGAGGCGGCGGTTGTCGTGCACCACCTGCTTTGATGCTCTGTGGTTCTGCTATTGTATGCATCCTTATAATCAACTCAATTATGTTATTTTCTTAGTTTTCTTTTCCCTAATCACTAGTATATTTGTGTTGTTTCCCATTAATTAATTGGACTGAGGTTTTTAAAGTTCCATATCAATTGGGGAAGAGGATTTAAAGAAGTTTAATGTCTTTATAATATTTTACCCGAATCGTTTTTACGTTCTTTTTTCTTCCAAAAACTATTTTGCTCAGGATTAGGTTTAAATTTGCTCATCATTGTTGTAACTGTCTAATACTCATCTTTGCACCTAATTTTTGCTAATTGTTGACCTCTTTTTTTTCATATCGATGAGCTCATCATTGAACCAAATTGTTAACTTGTTAATCTACTGGTTATATTTACTGGCAGCTCCAGTTCATCAGATGCAGCAATACTACAGGCTTGGGTTTTTTGATAACTGTTCTGACAAATGGACATCTCTTATTGACTGTTTAAATCTCAAGACAAAACGAGCTTCCGAGGTTCAGGTACGTATCGGATACAAAAATACGCTCTGGTTCTTATAATGTATATATTTTAAGAATGCTGAAATCTTGCTGTGGATCTTTATTTGGTTTTTTTTTCCATTAGCCCTGATGTGTAAATATTAGGTGAGATTTCAATTGGACCAAAAGCTGTAAGACACAAATACCACTTCTAGCTTTTAGCTGTGTCTCCTCAAGTCCTTTTGGCTAGTCTACTAGAATTTTGTAGATAAGAAACTAACTTCCCATTAATGGAATGGATAGAACACAGAAAGGAGGAAGGATTCCAACTAGTAGAATACTCAAGGAATTTCCAAAAAACATTATCACACTTGTTTCTAGAAAAAAAAGTATGATGAAAAGGGATGCAACAAGAGGAGCTAAACTCTACAATACACTCTCAAATTTCTGCCCGTCTCTAGCCTTCTCTCTAAAGCTTGTGGTTAACGGCATGCAGATCTTTTTTATTAGGGCATGAAACTGTTAGAATGCCTGTGACTTAAATGAACAAAGCCCAAACCAATCGATGAAGTTCTCGGTATTAGAATTTAGTTAAGTTACTAATTTAGGCCCTACAATTGGGTTTCTATTCGATCAATAAACTTTAAAAAGTGTTGAATAAGTCCTTGAACTTTCAGTTTTATGTTTATTTGGTCCATAAACTTTAAAAAGGGTTGAATAAGTTCTTGAACTTTCAATTTTACGTTTATTTGCTCCATAAACTTTAAAACGTGTTTAAACCTTTTATTTTGTGCCTCGTAAGTCCAAAAACTTTCAATTTTATGTCTAATAAGCCTTGATGTATTCGAGTTTTTTAAAATTCACGAAATTATTGGATATAAAGTTGAAAGTTTATGGTTCTATTAGACTTAAACTTTAATCTTATATCTATTAGGTCAATAATTTTTAAAAACTTTGAACTTATCTTCAAAGATCACACAAACTTAATAGTTTATGGACTTATTAACACTTTTTCAAATCGGCAATCTTTAAGACACAAGCTTGAAAGCTGAAGAACTATACTTGTCATTTAACCTAGAATTTTTTTTTTATTTTTTATCTCATGCTTCATAGTATTAATATTTTTGTACATTATGCACTTCATTTATTTGAAGCCTACAACTTTTTGTAACTGATGCTTAGGCTTTAGAAGAGGGCAATTGCAGCCCAACATGGCTCATATTTGGAAAATTTCTAAGCCTCTTATCTCATCTCAACTCTATGGAATTTAAACATGCCAAATAACAGTGAATTTTATTTTTCTTTGGTCCTGATCACAAAATAAGTGATTTTTACAATATTGAGAGTAATCCTAAGTTTCATCGTTTATTCTACTTCTTAGGAAACATTCTGGAATTTTTCACATGTTTTATTTCCAACATCAGTTCTCCTATGAATTCTTTTGCAGCCCTTGTTTTGGCCTTCTAATATACTCCCAGTTTCTTATAATAATAAGAAGAATAATAAAGATGTTGAGGCGGCTGTTTCTTAGTTTCTGAAGATGGACTCTTGATGAGGAATTGGTAACTATTCATCTTTTATTCAAACTAATATGAGCTTTTTTAGTGTACTTCTGTAATAGCCTAAACCCACCGCTAGCAGATATGGTCTGCTTTGACTGGTTACGTATTGCCGTCAGTTTCACGGTTTTAAAACGCGTCTACTAGGGGAGAGGTTTTCCACACCCTATAAGGAATGCTTCGTTCCACCCTCTAATCGATATGGGATCTCACAACATCAGACATTAAAGAAAAAGAAGAAATAATTATTTTTCTCGTTTTTTTTTTCTTTTGGTAATCTCGTCCGATGACTGCAGGTTTGAATACCTTGTTTTTTCTCTATCTGTTTTTACTTTTTGGTTATTCAAATGTCATCTCAAAGAAAAACAAAAACCCTGTTGCTAAATACTTGTTTTGAGTAAGATCAATGCACAATTTGGTAGCTTGTTACCTTGAACCGAGTCTTGTTTTTTAGGGTCTCTCCACAATCAGATATTACTTTTATATGGTTACTTAAGAAGTAACAAGATTAAATTAAATGCAGGAAATCCTCGAAAGCCGAGAGAAAGCCAAATCTCACATCTGGACGTTTCGAACCCCAGCAGAAGCATCGTCGCATTGGAAAGAACTGTTCGGAGATTTAGATGAAATGGAATGA

mRNA sequence

ATGGGATTGAGGCGGCGGTTGTCGTGCACCACCTGCTTTGATGCTCTGTGGTTCTGCTATTCTCCAGTTCATCAGATGCAGCAATACTACAGGCTTGGGTTTTTTGATAACTGTTCTGACAAATGGACATCTCTTATTGACTGTTTAAATCTCAAGACAAAACGAGCTTCCGAGGTTCAGGAAATCCTCGAAAGCCGAGAGAAAGCCAAATCTCACATCTGGACGTTTCGAACCCCAGCAGAAGCATCGTCGCATTGGAAAGAACTGTTCGGAGATTTAGATGAAATGGAATGA

Coding sequence (CDS)

ATGGGATTGAGGCGGCGGTTGTCGTGCACCACCTGCTTTGATGCTCTGTGGTTCTGCTATTCTCCAGTTCATCAGATGCAGCAATACTACAGGCTTGGGTTTTTTGATAACTGTTCTGACAAATGGACATCTCTTATTGACTGTTTAAATCTCAAGACAAAACGAGCTTCCGAGGTTCAGGAAATCCTCGAAAGCCGAGAGAAAGCCAAATCTCACATCTGGACGTTTCGAACCCCAGCAGAAGCATCGTCGCATTGGAAAGAACTGTTCGGAGATTTAGATGAAATGGAATGA

Protein sequence

MGLRRRLSCTTCFDALWFCYSPVHQMQQYYRLGFFDNCSDKWTSLIDCLNLKTKRASEVQEILESREKAKSHIWTFRTPAEASSHWKELFGDLDEME
Homology
BLAST of Csor.00g038840 vs. NCBI nr
Match: KAG6583605.1 (hypothetical protein SDJN03_19537, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 210 bits (535), Expect = 8.74e-69
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0

Query: 1  MGLRRRLSCTTCFDALWFCYSPVHQMQQYYRLGFFDNCSDKWTSLIDCLNLKTKRASEVQ 60
          MGLRRRLSCTTCFDALWFCYSPVHQMQQYYRLGFFDNCSDKWTSLIDCLNLKTKRASEVQ
Sbjct: 1  MGLRRRLSCTTCFDALWFCYSPVHQMQQYYRLGFFDNCSDKWTSLIDCLNLKTKRASEVQ 60

Query: 61 EILESREKAKSHIWTFRTPAEASSHWKELFGDLDEME 97
          EILESREKAKSHIWTFRTPAEASSHWKELFGDLDEME
Sbjct: 61 EILESREKAKSHIWTFRTPAEASSHWKELFGDLDEME 97

BLAST of Csor.00g038840 vs. NCBI nr
Match: XP_022964668.1 (uncharacterized protein LOC111464679 [Cucurbita moschata] >XP_022964669.1 uncharacterized protein LOC111464679 [Cucurbita moschata] >XP_022964670.1 uncharacterized protein LOC111464679 [Cucurbita moschata] >XP_022964671.1 uncharacterized protein LOC111464679 [Cucurbita moschata] >KAG7019308.1 hypothetical protein SDJN02_18268, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 208 bits (529), Expect = 1.16e-67
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0

Query: 1   MGLRRRLSCTTCFDALWFCYSPVHQMQQYYRLGFFDNCSDKWTSLIDCLNLKTKRASEVQ 60
           MG RRRLSCTTCFDALWFCYSPVHQMQQYYRLGFFDNCSDKWTSLIDCLNLKTKRASEVQ
Sbjct: 16  MGSRRRLSCTTCFDALWFCYSPVHQMQQYYRLGFFDNCSDKWTSLIDCLNLKTKRASEVQ 75

Query: 61  EILESREKAKSHIWTFRTPAEASSHWKELFGDLDEME 97
           EILESREKAKSHIWTFRTPAEASSHWKELFGDLDEME
Sbjct: 76  EILESREKAKSHIWTFRTPAEASSHWKELFGDLDEME 112

BLAST of Csor.00g038840 vs. NCBI nr
Match: XP_022970353.1 (uncharacterized protein LOC111469344 [Cucurbita maxima] >XP_022970354.1 uncharacterized protein LOC111469344 [Cucurbita maxima] >XP_022970355.1 uncharacterized protein LOC111469344 [Cucurbita maxima] >XP_022970356.1 uncharacterized protein LOC111469344 [Cucurbita maxima])

HSP 1 Score: 207 bits (527), Expect = 2.35e-67
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 0

Query: 1   MGLRRRLSCTTCFDALWFCYSPVHQMQQYYRLGFFDNCSDKWTSLIDCLNLKTKRASEVQ 60
           MG RRRLSCTTCFDALWFCYSPVHQMQQYYRLGFFDNCSDKWTSL+DCLNLKTKRASEVQ
Sbjct: 16  MGSRRRLSCTTCFDALWFCYSPVHQMQQYYRLGFFDNCSDKWTSLLDCLNLKTKRASEVQ 75

Query: 61  EILESREKAKSHIWTFRTPAEASSHWKELFGDLDEME 97
           EILESREKAKSHIWTFRTPAEASSHWKELFGDLDEME
Sbjct: 76  EILESREKAKSHIWTFRTPAEASSHWKELFGDLDEME 112

BLAST of Csor.00g038840 vs. NCBI nr
Match: XP_023519221.1 (uncharacterized protein LOC111782657 [Cucurbita pepo subsp. pepo] >XP_023519222.1 uncharacterized protein LOC111782657 [Cucurbita pepo subsp. pepo] >XP_023519223.1 uncharacterized protein LOC111782657 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204 bits (520), Expect = 2.74e-66
Identity = 93/97 (95.88%), Postives = 96/97 (98.97%), Query Frame = 0

Query: 1   MGLRRRLSCTTCFDALWFCYSPVHQMQQYYRLGFFDNCSDKWTSLIDCLNLKTKRASEVQ 60
           MG RR+LSCTTCFDALWFCYSPVHQMQQYYRLGFFDNCSDKWTSL+DCLNLKTKRASEVQ
Sbjct: 16  MGSRRQLSCTTCFDALWFCYSPVHQMQQYYRLGFFDNCSDKWTSLLDCLNLKTKRASEVQ 75

Query: 61  EILESREKAKSHIWTFRTPAEASSHWKELFGDLDEME 97
           EILESRE+AKSHIWTFRTPAEASSHWKELFGDLDEME
Sbjct: 76  EILESRERAKSHIWTFRTPAEASSHWKELFGDLDEME 112

BLAST of Csor.00g038840 vs. NCBI nr
Match: XP_022152905.1 (uncharacterized protein C227.17c [Momordica charantia] >XP_022152907.1 uncharacterized protein C227.17c [Momordica charantia])

HSP 1 Score: 192 bits (489), Expect = 1.47e-61
Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 0

Query: 2   GLRRRLSCTTCFDALWFCYSPVHQMQQYYRLGFFDNCSDKWTSLIDCLNLKTKRASEVQE 61
           GLR RLSCTTCFDALWFCYSPVHQMQQYYRLG FDNCSDKWT+L+DCL+LKTKRASEVQE
Sbjct: 17  GLRGRLSCTTCFDALWFCYSPVHQMQQYYRLGVFDNCSDKWTALVDCLSLKTKRASEVQE 76

Query: 62  ILESREKAKSHIWTFRTPAEASSHWKELFGDLDEME 97
           ILESREKAKSHIWTFRTP E+SSHWK+LFG LDEME
Sbjct: 77  ILESREKAKSHIWTFRTPEESSSHWKQLFGHLDEME 112

BLAST of Csor.00g038840 vs. ExPASy TrEMBL
Match: A0A6J1HJL4 (uncharacterized protein LOC111464679 OS=Cucurbita moschata OX=3662 GN=LOC111464679 PE=4 SV=1)

HSP 1 Score: 208 bits (529), Expect = 5.63e-68
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0

Query: 1   MGLRRRLSCTTCFDALWFCYSPVHQMQQYYRLGFFDNCSDKWTSLIDCLNLKTKRASEVQ 60
           MG RRRLSCTTCFDALWFCYSPVHQMQQYYRLGFFDNCSDKWTSLIDCLNLKTKRASEVQ
Sbjct: 16  MGSRRRLSCTTCFDALWFCYSPVHQMQQYYRLGFFDNCSDKWTSLIDCLNLKTKRASEVQ 75

Query: 61  EILESREKAKSHIWTFRTPAEASSHWKELFGDLDEME 97
           EILESREKAKSHIWTFRTPAEASSHWKELFGDLDEME
Sbjct: 76  EILESREKAKSHIWTFRTPAEASSHWKELFGDLDEME 112

BLAST of Csor.00g038840 vs. ExPASy TrEMBL
Match: A0A6J1I2M7 (uncharacterized protein LOC111469344 OS=Cucurbita maxima OX=3661 GN=LOC111469344 PE=4 SV=1)

HSP 1 Score: 207 bits (527), Expect = 1.14e-67
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 0

Query: 1   MGLRRRLSCTTCFDALWFCYSPVHQMQQYYRLGFFDNCSDKWTSLIDCLNLKTKRASEVQ 60
           MG RRRLSCTTCFDALWFCYSPVHQMQQYYRLGFFDNCSDKWTSL+DCLNLKTKRASEVQ
Sbjct: 16  MGSRRRLSCTTCFDALWFCYSPVHQMQQYYRLGFFDNCSDKWTSLLDCLNLKTKRASEVQ 75

Query: 61  EILESREKAKSHIWTFRTPAEASSHWKELFGDLDEME 97
           EILESREKAKSHIWTFRTPAEASSHWKELFGDLDEME
Sbjct: 76  EILESREKAKSHIWTFRTPAEASSHWKELFGDLDEME 112

BLAST of Csor.00g038840 vs. ExPASy TrEMBL
Match: A0A6J1DHI6 (uncharacterized protein C227.17c OS=Momordica charantia OX=3673 GN=LOC111020523 PE=4 SV=1)

HSP 1 Score: 192 bits (489), Expect = 7.13e-62
Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 0

Query: 2   GLRRRLSCTTCFDALWFCYSPVHQMQQYYRLGFFDNCSDKWTSLIDCLNLKTKRASEVQE 61
           GLR RLSCTTCFDALWFCYSPVHQMQQYYRLG FDNCSDKWT+L+DCL+LKTKRASEVQE
Sbjct: 17  GLRGRLSCTTCFDALWFCYSPVHQMQQYYRLGVFDNCSDKWTALVDCLSLKTKRASEVQE 76

Query: 62  ILESREKAKSHIWTFRTPAEASSHWKELFGDLDEME 97
           ILESREKAKSHIWTFRTP E+SSHWK+LFG LDEME
Sbjct: 77  ILESREKAKSHIWTFRTPEESSSHWKQLFGHLDEME 112

BLAST of Csor.00g038840 vs. ExPASy TrEMBL
Match: A0A1S3CG12 (uncharacterized protein LOC103500495 OS=Cucumis melo OX=3656 GN=LOC103500495 PE=4 SV=1)

HSP 1 Score: 191 bits (484), Expect = 4.13e-61
Identity = 86/97 (88.66%), Postives = 92/97 (94.85%), Query Frame = 0

Query: 1   MGLRRRLSCTTCFDALWFCYSPVHQMQQYYRLGFFDNCSDKWTSLIDCLNLKTKRASEVQ 60
           MG +RRLSCTTCFDALWFCYSPVHQMQQYYR+G FDNCS KWT+L+DCLNLKTKRASEVQ
Sbjct: 16  MGPKRRLSCTTCFDALWFCYSPVHQMQQYYRVGVFDNCSSKWTALLDCLNLKTKRASEVQ 75

Query: 61  EILESREKAKSHIWTFRTPAEASSHWKELFGDLDEME 97
           EILESREKAKSHIWTFRTP EASSHWKELFG L+E+E
Sbjct: 76  EILESREKAKSHIWTFRTPEEASSHWKELFGHLEEIE 112

BLAST of Csor.00g038840 vs. ExPASy TrEMBL
Match: A0A0A0LSX6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G145950 PE=4 SV=1)

HSP 1 Score: 188 bits (478), Expect = 3.39e-60
Identity = 84/97 (86.60%), Postives = 92/97 (94.85%), Query Frame = 0

Query: 1   MGLRRRLSCTTCFDALWFCYSPVHQMQQYYRLGFFDNCSDKWTSLIDCLNLKTKRASEVQ 60
           +G R+RLSCTTCFDALWFCYSPVHQMQQYYR+G FDNCS+KWT+L+DCL LKTKRASEVQ
Sbjct: 16  LGSRKRLSCTTCFDALWFCYSPVHQMQQYYRVGVFDNCSNKWTALVDCLTLKTKRASEVQ 75

Query: 61  EILESREKAKSHIWTFRTPAEASSHWKELFGDLDEME 97
           EILESREKAKSHIWTFRTP EASSHWKELFG L+E+E
Sbjct: 76  EILESREKAKSHIWTFRTPEEASSHWKELFGHLEEIE 112

BLAST of Csor.00g038840 vs. TAIR 10
Match: AT4G25315.2 (Expressed protein )

HSP 1 Score: 134.0 bits (336), Expect = 6.3e-32
Identity = 60/95 (63.16%), Postives = 74/95 (77.89%), Query Frame = 0

Query: 3   LRRRLSCTTCFDALWFCYSPVHQMQQYYRLGFFDNCSDKWTSLIDCLNLKTKRASEVQEI 62
           +RRR+SCT CFDALWFCYSP +QMQQYYR+G  D+C+ K++ L DCL+LKTKRASE + I
Sbjct: 11  VRRRVSCTKCFDALWFCYSPFYQMQQYYRVGKLDDCTKKFSDLFDCLSLKTKRASEAERI 70

Query: 63  LESREK--AKSHIWTFRTPAEASSHWKELFGDLDE 96
           LE +EK  A+ HIW  RT  EA SHW E FG L++
Sbjct: 71  LEEQEKAAAEKHIWIMRTQEEAVSHWNETFGHLED 105

BLAST of Csor.00g038840 vs. TAIR 10
Match: AT4G25315.1 (Expressed protein )

HSP 1 Score: 121.3 bits (303), Expect = 4.2e-28
Identity = 59/114 (51.75%), Postives = 74/114 (64.91%), Query Frame = 0

Query: 3   LRRRLSCTTCFDALWFCY-------------------SPVHQMQQYYRLGFFDNCSDKWT 62
           +RRR+SCT CFDALWFCY                   +P +QMQQYYR+G  D+C+ K++
Sbjct: 11  VRRRVSCTKCFDALWFCYWMSRWSNITSNGDDTGNDLAPFYQMQQYYRVGKLDDCTKKFS 70

Query: 63  SLIDCLNLKTKRASEVQEILESREK--AKSHIWTFRTPAEASSHWKELFGDLDE 96
            L DCL+LKTKRASE + ILE +EK  A+ HIW  RT  EA SHW E FG L++
Sbjct: 71  DLFDCLSLKTKRASEAERILEEQEKAAAEKHIWIMRTQEEAVSHWNETFGHLED 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6583605.18.74e-69100.00hypothetical protein SDJN03_19537, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022964668.11.16e-6798.97uncharacterized protein LOC111464679 [Cucurbita moschata] >XP_022964669.1 unchar... [more]
XP_022970353.12.35e-6797.94uncharacterized protein LOC111469344 [Cucurbita maxima] >XP_022970354.1 uncharac... [more]
XP_023519221.12.74e-6695.88uncharacterized protein LOC111782657 [Cucurbita pepo subsp. pepo] >XP_023519222.... [more]
XP_022152905.11.47e-6190.63uncharacterized protein C227.17c [Momordica charantia] >XP_022152907.1 uncharact... [more]
Match NameE-valueIdentityDescription
A0A6J1HJL45.63e-6898.97uncharacterized protein LOC111464679 OS=Cucurbita moschata OX=3662 GN=LOC1114646... [more]
A0A6J1I2M71.14e-6797.94uncharacterized protein LOC111469344 OS=Cucurbita maxima OX=3661 GN=LOC111469344... [more]
A0A6J1DHI67.13e-6290.63uncharacterized protein C227.17c OS=Momordica charantia OX=3673 GN=LOC111020523 ... [more]
A0A1S3CG124.13e-6188.66uncharacterized protein LOC103500495 OS=Cucumis melo OX=3656 GN=LOC103500495 PE=... [more]
A0A0A0LSX63.39e-6086.60Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G145950 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G25315.26.3e-3263.16Expressed protein [more]
AT4G25315.14.2e-2851.75Expressed protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021475Protein of unknown function DUF3128PFAMPF11326DUF3128coord: 6..77
e-value: 1.2E-28
score: 99.3
IPR021475Protein of unknown function DUF3128PANTHERPTHR28052UPF0545 PROTEIN C22ORF39coord: 5..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g038840.m02Csor.00g038840.m02mRNA