Csor.00g038580 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g038580
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description50S ribosomal protein L19, chloroplastic-like
LocationCsor_Chr13: 2371509 .. 2373343 (-)
RNA-Seq ExpressionCsor.00g038580
SyntenyCsor.00g038580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGGTTTTCGCAGAATTAATCAATTGGTACGAAGGCAAAGTCCCGATGCTCATTTCAAATTGATTAGAGGTTATCCTCTAAATGGGGATGCTGGCTGTAGCTGCTCGGCGCCAAGGTCGATGGAATGTAGTTTTGGGAATCCGTATGCGTCTTTGAGTGGGCAATCAAAATCCGGAAGCCTTTGTATGTATTTCTGTTTGTTTAATATTTTGTGCATTATGTAGTATGATATGTTCTTGTTGTTTTCAAAGGTTCTATAGCTATTCAGTAAATCTACTTTGGTTTTATACATATATAATTTGCGACATTTAGTCTAGTTCGAATTCCAAGCTTTTACGAATTCATTTATGCTTCTTGTTTGAGTTCATAAGCAATGAGGCACAAGTAAATCTCATGATATCGGTCTTGGCCGACACCTGATTGACGGTAGGGGAGCGGGTAATATGTATAGTAACTTATCAATTGTGTACATTATGTATGTGTCTCTCATACCGACCAGACGGGATTGGTGCTAAATGTCTTATTGATATAAAGTGACGTAGAGATGAGTACATTTGCTGGAACTGGCTTCTGAGTTCAGTTATGGCTTAATCAACAGAACTATGAACTTCACTGTTGTCTCGAACACGTAGTTATTATGTATCCTATTTTCCTTCACAACAAATTAGTCCGAAAAATAATTAGCTCAAGTCGAGCTGATGTCCCTTTTCAAGGGAAAAAAGAAAAAAGTGGTTATAGCTCTTTGCTTCTATGATCCTTGCCAATTGAAGAGCCTTTCATTAATTTCCTTGTTCTGTTGGTTTGTGGGTACTCATTGGAAGCAATATCTTTTTATTCAAGAGTTTTTTTTTGGAATATATCACTTTGTAACAATTTATCAACTATGTAGCAGAGAAGTATGGGCTCTCAAATGGAATTTGTTCCTTCGAGCAACCATATATCTTCATCTTGTTCAGCATTCCAAAGTCTTAGGCCACATTCATATCAGTTGGCAGAGATTGCAGCTCCTTTTTCTAGGAGGGGTATTGCTACGACAAGTTCAACCGAATCGGCTCCACAAGGATCTCCCGCAGTTGATTCTGATATAACTCCTCGCATCAAATTTAAGCGGCTTGATAAAACCTCAAAATACATAATGCAGGTATTCGCATTTCTGAGTACTTTTGGAAAAGAAGTAATTTCATTTTATCGTCCAGTCTGTTTGATTTCGATATATTGTTTTCTTTTCCCCACAGATTTTAGATAAGGAAGCTATTGGGGAGGTAAAAAAAGCACAGAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGTAGAGTTCATTTCAGTCAAATACTATATCAGCAGTTGTAGATGAGGTTACTGAACAATTTTCTGGCTTTTGCTGTCTTGTGTGAACAGGAAGTACCTGAGAACAAGCGACGTGTCTCAACGTTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTGTAAGTAAATGCTGATTTAAAAATCTGATACAAATGTATTAGAACATGATGAACGCTGCGATCACACGTGTTGAAGTTGGTGTATTAATATGAACATACATGTGTTTATTCTTCTTGTGTATGTCTATTTCTGATAGCACTTTGCTTATGACTAAACAAGTGGGTGATGCATGACAGATACTCACCAAACATAAAAGAAATTATGGTTTTGGACAAGAAGAAAGTGCGGAGGGCTAAGCTTTACTATCTTAGGGACAAAATGAACGCGCTTAAGAAGCACTAG

mRNA sequence

ATGCAAGGTTTTCGCAGAATTAATCAATTGGTACGAAGGCAAAGTCCCGATGCTCATTTCAAATTGATTAGAGGTTATCCTCTAAATGGGGATGCTGGCTGTAGCTGCTCGGCGCCAAGGTCGATGGAATGTAGTTTTGGGAATCCGTATGCGTCTTTGAGTGGGCAATCAAAATCCGGAAGCCTTTCATTCCAAAGTCTTAGGCCACATTCATATCAGTTGGCAGAGATTGCAGCTCCTTTTTCTAGGAGGGGTATTGCTACGACAAGTTCAACCGAATCGGCTCCACAAGGATCTCCCGCAGTTGATTCTGATATAACTCCTCGCATCAAATTTAAGCGGCTTGATAAAACCTCAAAATACATAATGCAGATTTTAGATAAGGAAGCTATTGGGGAGGTAAAAAAAGCACAGAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGAAGTACCTGAGAACAAGCGACGTGTCTCAACGTTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTATACTCACCAAACATAAAAGAAATTATGGTTTTGGACAAGAAGAAAGTGCGGAGGGCTAAGCTTTACTATCTTAGGGACAAAATGAACGCGCTTAAGAAGCACTAG

Coding sequence (CDS)

ATGCAAGGTTTTCGCAGAATTAATCAATTGGTACGAAGGCAAAGTCCCGATGCTCATTTCAAATTGATTAGAGGTTATCCTCTAAATGGGGATGCTGGCTGTAGCTGCTCGGCGCCAAGGTCGATGGAATGTAGTTTTGGGAATCCGTATGCGTCTTTGAGTGGGCAATCAAAATCCGGAAGCCTTTCATTCCAAAGTCTTAGGCCACATTCATATCAGTTGGCAGAGATTGCAGCTCCTTTTTCTAGGAGGGGTATTGCTACGACAAGTTCAACCGAATCGGCTCCACAAGGATCTCCCGCAGTTGATTCTGATATAACTCCTCGCATCAAATTTAAGCGGCTTGATAAAACCTCAAAATACATAATGCAGATTTTAGATAAGGAAGCTATTGGGGAGGTAAAAAAAGCACAGAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGAAGTACCTGAGAACAAGCGACGTGTCTCAACGTTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTATACTCACCAAACATAAAAGAAATTATGGTTTTGGACAAGAAGAAAGTGCGGAGGGCTAAGCTTTACTATCTTAGGGACAAAATGAACGCGCTTAAGAAGCACTAG

Protein sequence

MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSMECSFGNPYASLSGQSKSGSLSFQSLRPHSYQLAEIAAPFSRRGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYYLRDKMNALKKH
Homology
[Close]
BLAST of Csor.00g038580 vs. ExPASy Swiss-Prot
Match: Q8W463 (50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g17560 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-29
Identity = 64/109 (58.72%), Postives = 92/109 (84.40%), Query Frame = 0 

Query: 122 IMQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTT 181
           +M IL+++AI EV +  R +P+I+ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT
Sbjct: 114 VMGILNQKAI-EVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTT 173

Query: 182 FRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYYLRDKMNAL 231
            R+RR++AG+G+E +FP+YSPNIKEI V+  +KVRRA+LYYLRDK+  L
Sbjct: 174 IRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRL 221

[Close]
BLAST of Csor.00g038580 vs. ExPASy Swiss-Prot
Match: Q8RXX5 (50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g47190 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-29
Identity = 64/109 (58.72%), Postives = 91/109 (83.49%), Query Frame = 0 

Query: 122 IMQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTT 181
           IM +L+K+AI EV +  R +P ++ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT
Sbjct: 118 IMGLLNKKAI-EVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTT 177

Query: 182 FRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYYLRDKMNAL 231
            R+RR++AG+G+E +FP+YSPNIKEI V+  +KVRRA+LYYLRDK+  L
Sbjct: 178 IRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRL 225

[Close]
BLAST of Csor.00g038580 vs. ExPASy Swiss-Prot
Match: P82413 (50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL19 PE=1 SV=2)

HSP 1 Score: 127.5 bits (319), Expect = 2.0e-28
Identity = 83/207 (40.10%), Postives = 125/207 (60.39%), Query Frame = 0 

Query: 25  GYPLNGDAGCSCSAPRSMECSFGNPYASLSGQSKSGSLSFQSLRPHSYQL-AEIAAPFSR 84
           G+P++ +   S S+            ++L   + S   SF +      +  AE ++    
Sbjct: 29  GFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSFPARNSFVVRSEAEDSSDAPA 88

Query: 85  RGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQREIPD 144
             +A  +  E  P  S A   +  PR +  +L      IM IL+K+A+   ++  R +P 
Sbjct: 89  ESVAVVAE-EELPVESEAEAEERPPRQQRVKLGD----IMGILNKKAVHAAEEL-RPVPG 148

Query: 145 IKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPN 204
           I+ G IVQ+++EVPENKRR+S  KGIVI+R+NAG++TT R+RR++AGVG+E +FPLYSPN
Sbjct: 149 IRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPN 208

Query: 205 IKEIMVLDKKKVRRAKLYYLRDKMNAL 231
           IKEI V+  +KVR+A+LYYLRDK+  L
Sbjct: 209 IKEIKVVSHRKVRKARLYYLRDKLPRL 229

[Close]
BLAST of Csor.00g038580 vs. ExPASy Swiss-Prot
Match: A5G0G7 (50S ribosomal protein L19 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rplS PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.4e-19
Identity = 49/106 (46.23%), Postives = 73/106 (68.87%), Query Frame = 0 

Query: 122 IMQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKR-RVSTLKGIVIARRNAGLNT 181
           ++Q +D E IG++ +A R +PD KPG  +++ V V E +R R+   +G+ IAR N G+N+
Sbjct: 3   VIQTIDAEQIGKLAEA-RAVPDFKPGDNLRVSVRVTEGERTRIQAFEGVCIARSNRGINS 62

Query: 182 TFRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYYLRDK 227
            F +R++  G G+E +FPLYSPN+ EI V  +  VRRAKLYYLR +
Sbjct: 63  NFTVRKISYGEGVERVFPLYSPNVTEIAVTRRGVVRRAKLYYLRGR 107

[Close]
BLAST of Csor.00g038580 vs. ExPASy Swiss-Prot
Match: Q2G8H1 (50S ribosomal protein L19 OS=Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CCUG 56034 / CIP 105152 / NBRC 16084 / F199) OX=279238 GN=rplS PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.3e-18
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 0 

Query: 122 IMQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKR-RVSTLKGIVIARRNAGLNT 181
           ++Q L+ EAI E  KA++EIPD + G  V++ V V E +R RV   +G+ IAR N GL +
Sbjct: 3   LIQQLEAEAIAEF-KAKKEIPDFRAGDTVRVGVRVVEGERTRVQAYEGVCIARSNRGLGS 62

Query: 182 TFRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYYLRDK 227
            F +R++  G G+E +FPLYSPNI  I V+ +  VRRAKLYYLR +
Sbjct: 63  NFTVRKISFGEGVERVFPLYSPNIDSITVVRRGVVRRAKLYYLRGR 107

[Close]
BLAST of Csor.00g038580 vs. NCBI nr
Match: KAG6583579.1 (50S ribosomal protein L19, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 453 bits (1165), Expect = 2.10e-160
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0 

Query: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSMECSFGNPYASLSGQSKSG 60
           MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSMECSFGNPYASLSGQSKSG
Sbjct: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSMECSFGNPYASLSGQSKSG 60

Query: 61  SLSFQSLRPHSYQLAEIAAPFSRRGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSK 120
           SLSFQSLRPHSYQLAEIAAPFSRRGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSK
Sbjct: 61  SLSFQSLRPHSYQLAEIAAPFSRRGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSK 120

Query: 121 YIMQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNT 180
           YIMQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNT
Sbjct: 121 YIMQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNT 180

Query: 181 TFRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYYLRDKMNALKKH 233
           TFRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYYLRDKMNALKKH
Sbjct: 181 TFRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYYLRDKMNALKKH 233

[Close]
BLAST of Csor.00g038580 vs. NCBI nr
Match: KAG7019281.1 (50S ribosomal protein L19, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 453 bits (1165), Expect = 3.49e-160
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0 

Query: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSMECSFGNPYASLSGQSKSG 60
           MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSMECSFGNPYASLSGQSKSG
Sbjct: 15  MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSMECSFGNPYASLSGQSKSG 74

Query: 61  SLSFQSLRPHSYQLAEIAAPFSRRGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSK 120
           SLSFQSLRPHSYQLAEIAAPFSRRGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSK
Sbjct: 75  SLSFQSLRPHSYQLAEIAAPFSRRGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSK 134

Query: 121 YIMQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNT 180
           YIMQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNT
Sbjct: 135 YIMQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNT 194

Query: 181 TFRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYYLRDKMNALKKH 233
           TFRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYYLRDKMNALKKH
Sbjct: 195 TFRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYYLRDKMNALKKH 247

[Close]
BLAST of Csor.00g038580 vs. NCBI nr
Match: XP_022970336.1 (50S ribosomal protein L19-2, chloroplastic-like isoform X1 [Cucurbita maxima] >XP_022970337.1 50S ribosomal protein L19-2, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 384 bits (987), Expect = 7.91e-133
Identity = 212/264 (80.30%), Postives = 215/264 (81.44%), Query Frame = 0 

Query: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSMECSFGNPYASLSGQS--- 60
           MQGFRRINQLVRRQSPD HFKLIRGYPLNGDAGCSCSAP SMECSFGNPY SLSG     
Sbjct: 1   MQGFRRINQLVRRQSPDVHFKLIRGYPLNGDAGCSCSAPMSMECSFGNPYGSLSGSLLRS 60

Query: 61  ----------------------------KSGSLSFQSLRPHSYQLAEIAAPFSRRGIATT 120
                                        S   +FQSLRPHSYQLAEIAAPFS RGIA T
Sbjct: 61  FSRLGNQYPEAFRSMGSQMEFVPSGNHISSSCSAFQSLRPHSYQLAEIAAPFSSRGIAMT 120

Query: 121 SSTESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQREIPDIKPGYI 180
           SSTES+PQGSP VDSDIT RIKFK LDKTSK+IMQILDKEA GEVK AQREIPDIK GYI
Sbjct: 121 SSTESSPQGSPTVDSDIT-RIKFKWLDKTSKHIMQILDKEAFGEVK-AQREIPDIKSGYI 180

Query: 181 VQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPNIKEIMV 233
           VQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPNIKEI V
Sbjct: 181 VQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPNIKEIKV 240

[Close]
BLAST of Csor.00g038580 vs. NCBI nr
Match: XP_038896029.1 (uncharacterized protein LOC120084206 [Benincasa hispida])

HSP 1 Score: 362 bits (930), Expect = 4.82e-124
Identity = 204/269 (75.84%), Postives = 212/269 (78.81%), Query Frame = 0 

Query: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSME------CSFGNPYASLS 60
           MQGFRRINQLVRRQSPDAHFKLIRGYPLNG+AGCSCS P  ME      C FGN Y S S
Sbjct: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNGNAGCSCSTPMLMENSSAISCLFGNSYVSFS 60

Query: 61  GQ-----SKSGSL--------------------------SFQSLRPHSYQLAEIAAPFSR 120
           G      S+ G+                           +F S RPH +QLAEI APFS 
Sbjct: 61  GSLLRSFSRLGNQDPEAFKNMSSQMEFVPSRKHVSSVCSAFPSSRPHLFQLAEIVAPFSS 120

Query: 121 RGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQREIPD 180
           RGIATTSS ESA QGSPAVDSDITPRIKFKRLDKTSK+IMQILDKEA+ EVK AQREIPD
Sbjct: 121 RGIATTSSMESALQGSPAVDSDITPRIKFKRLDKTSKHIMQILDKEAVEEVK-AQREIPD 180

Query: 181 IKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPN 232
           I+PGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPN
Sbjct: 181 IRPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPN 240

[Close]
BLAST of Csor.00g038580 vs. NCBI nr
Match: XP_022955270.1 (54S ribosomal protein subunit img1, mitochondrial-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 353 bits (906), Expect = 2.16e-120
Identity = 199/270 (73.70%), Postives = 211/270 (78.15%), Query Frame = 0 

Query: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSMECSF------GNPYASLS 60
           MQ FRRINQLVRRQSPDAHFK IRGYPLNGDA C CSA  SME SF      GNPY SL+
Sbjct: 1   MQNFRRINQLVRRQSPDAHFKSIRGYPLNGDASCCCSASMSMEKSFTSLRLFGNPYESLN 60

Query: 61  GQ-----SKSGSL--------------------------SFQSLRPHSYQLAEIAAPFSR 120
           G      SK G+                           +FQS + H +QLAEIAAPFS 
Sbjct: 61  GSLFRSFSKLGNQYPEAFKDMGSQMEFLPSVKRVSSTCPAFQSPKKHLFQLAEIAAPFSS 120

Query: 121 RGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQREIPD 180
           RGIATTSS ESAPQGS  +D+DITPRIKFKRLDKTSK+IMQILDKEA+ EVK A+REIPD
Sbjct: 121 RGIATTSSMESAPQGSSGIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVK-AKREIPD 180

Query: 181 IKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPN 233
           IKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRR+VAGVGIESLFPLYSPN
Sbjct: 181 IKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRVVAGVGIESLFPLYSPN 240

[Close]
BLAST of Csor.00g038580 vs. ExPASy TrEMBL
Match: A0A6J1I0B3 (50S ribosomal protein L19-2, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469331 PE=3 SV=1)

HSP 1 Score: 384 bits (987), Expect = 3.83e-133
Identity = 212/264 (80.30%), Postives = 215/264 (81.44%), Query Frame = 0 

Query: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSMECSFGNPYASLSGQS--- 60
           MQGFRRINQLVRRQSPD HFKLIRGYPLNGDAGCSCSAP SMECSFGNPY SLSG     
Sbjct: 1   MQGFRRINQLVRRQSPDVHFKLIRGYPLNGDAGCSCSAPMSMECSFGNPYGSLSGSLLRS 60

Query: 61  ----------------------------KSGSLSFQSLRPHSYQLAEIAAPFSRRGIATT 120
                                        S   +FQSLRPHSYQLAEIAAPFS RGIA T
Sbjct: 61  FSRLGNQYPEAFRSMGSQMEFVPSGNHISSSCSAFQSLRPHSYQLAEIAAPFSSRGIAMT 120

Query: 121 SSTESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQREIPDIKPGYI 180
           SSTES+PQGSP VDSDIT RIKFK LDKTSK+IMQILDKEA GEVK AQREIPDIK GYI
Sbjct: 121 SSTESSPQGSPTVDSDIT-RIKFKWLDKTSKHIMQILDKEAFGEVK-AQREIPDIKSGYI 180

Query: 181 VQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPNIKEIMV 233
           VQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPNIKEI V
Sbjct: 181 VQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPNIKEIKV 240

[Close]
BLAST of Csor.00g038580 vs. ExPASy TrEMBL
Match: A0A6J1GUP7 (54S ribosomal protein subunit img1, mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457281 PE=3 SV=1)

HSP 1 Score: 353 bits (906), Expect = 1.05e-120
Identity = 199/270 (73.70%), Postives = 211/270 (78.15%), Query Frame = 0 

Query: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSMECSF------GNPYASLS 60
           MQ FRRINQLVRRQSPDAHFK IRGYPLNGDA C CSA  SME SF      GNPY SL+
Sbjct: 1   MQNFRRINQLVRRQSPDAHFKSIRGYPLNGDASCCCSASMSMEKSFTSLRLFGNPYESLN 60

Query: 61  GQ-----SKSGSL--------------------------SFQSLRPHSYQLAEIAAPFSR 120
           G      SK G+                           +FQS + H +QLAEIAAPFS 
Sbjct: 61  GSLFRSFSKLGNQYPEAFKDMGSQMEFLPSVKRVSSTCPAFQSPKKHLFQLAEIAAPFSS 120

Query: 121 RGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQREIPD 180
           RGIATTSS ESAPQGS  +D+DITPRIKFKRLDKTSK+IMQILDKEA+ EVK A+REIPD
Sbjct: 121 RGIATTSSMESAPQGSSGIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVK-AKREIPD 180

Query: 181 IKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPN 233
           IKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRR+VAGVGIESLFPLYSPN
Sbjct: 181 IKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRVVAGVGIESLFPLYSPN 240

[Close]
BLAST of Csor.00g038580 vs. ExPASy TrEMBL
Match: A0A6J1GVN3 (54S ribosomal protein subunit img1, mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457281 PE=3 SV=1)

HSP 1 Score: 353 bits (905), Expect = 1.54e-120
Identity = 199/271 (73.43%), Postives = 211/271 (77.86%), Query Frame = 0 

Query: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSMECSF------GNPYASLS 60
           MQ FRRINQLVRRQSPDAHFK IRGYPLNGDA C CSA  SME SF      GNPY SL+
Sbjct: 1   MQNFRRINQLVRRQSPDAHFKSIRGYPLNGDASCCCSASMSMEKSFTSLRLFGNPYESLN 60

Query: 61  GQ-----SKSGSL---------------------------SFQSLRPHSYQLAEIAAPFS 120
           G      SK G+                            +FQS + H +QLAEIAAPFS
Sbjct: 61  GSLFRSFSKLGNQYPEAFQKDMGSQMEFLPSVKRVSSTCPAFQSPKKHLFQLAEIAAPFS 120

Query: 121 RRGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQREIP 180
            RGIATTSS ESAPQGS  +D+DITPRIKFKRLDKTSK+IMQILDKEA+ EVK A+REIP
Sbjct: 121 SRGIATTSSMESAPQGSSGIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVK-AKREIP 180

Query: 181 DIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSP 233
           DIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRR+VAGVGIESLFPLYSP
Sbjct: 181 DIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRVVAGVGIESLFPLYSP 240

[Close]
BLAST of Csor.00g038580 vs. ExPASy TrEMBL
Match: A0A6J1K1Y5 (50S ribosomal protein L19, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490302 PE=3 SV=1)

HSP 1 Score: 347 bits (891), Expect = 2.01e-118
Identity = 200/270 (74.07%), Postives = 209/270 (77.41%), Query Frame = 0 

Query: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSMECS------FGNPYASLS 60
           MQ F RINQLVRRQS  AHFK IRGYPLNGDA   CSA  SME S      F NPY SL+
Sbjct: 1   MQNFPRINQLVRRQSSYAHFKPIRGYPLNGDASSCCSASMSMENSLTSLRLFANPYGSLN 60

Query: 61  GQ-----SKSGSL--------------------------SFQSLRPHSYQLAEIAAPFSR 120
           G      SK G+                           +FQS R H +QLAEIAAPFS 
Sbjct: 61  GSLFRSFSKLGNQYPEAFKDMGSQMEFLPSGKRVSSACPAFQSPRKHLFQLAEIAAPFSS 120

Query: 121 RGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQREIPD 180
           RGIATTSS ESAPQGSPA+DSDITPRIKFKRLDKTSK+IMQILDKEAI EVK A+REIPD
Sbjct: 121 RGIATTSSMESAPQGSPAIDSDITPRIKFKRLDKTSKHIMQILDKEAIEEVK-AKREIPD 180

Query: 181 IKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPN 233
           IKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRR+VAGVGIESLFPLYSPN
Sbjct: 181 IKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRVVAGVGIESLFPLYSPN 240

[Close]
BLAST of Csor.00g038580 vs. ExPASy TrEMBL
Match: A0A1S3CHF9 (50S ribosomal protein L19-2, chloroplastic-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500938 PE=3 SV=1)

HSP 1 Score: 347 bits (890), Expect = 2.85e-118
Identity = 196/269 (72.86%), Postives = 208/269 (77.32%), Query Frame = 0 

Query: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSME------CSFGNPYASLS 60
           MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDA CSCSAP  ME      C FG  Y SLS
Sbjct: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDASCSCSAPMLMENSFTIPCLFGKSYGSLS 60

Query: 61  G-----------------QSKSGSLSF--------------QSLRPHSYQLAEIAAPFSR 120
           G                 ++ S  + F              QS RPH +QLAEIAAPFS 
Sbjct: 61  GSLWRSFSWSGNQYPEAFKNMSSQMEFVALRKHASSTFSVIQSSRPHFFQLAEIAAPFSS 120

Query: 121 RGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQREIPD 180
           RGIATTSS  SA  GSPAVDS I PRIKFKRLDKTS++IMQILDKEA+ EVK A REIPD
Sbjct: 121 RGIATTSSMGSALLGSPAVDSVIPPRIKFKRLDKTSRHIMQILDKEAVEEVK-AHREIPD 180

Query: 181 IKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPN 232
           IKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLN+TFR+RR+VAGVGIESLFPLYSPN
Sbjct: 181 IKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVGIESLFPLYSPN 240

[Close]
BLAST of Csor.00g038580 vs. TAIR 10
Match: AT5G11750.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 219.5 bits (558), Expect = 2.7e-57
Identity = 115/154 (74.68%), Postives = 135/154 (87.66%), Query Frame = 0 

Query: 81  FSRRGIATT-SSTESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQR 140
           +S R  +TT  S +S PQGSP  D  +  RIKFKRLDKT+K+IMQI+DKEA+ EV+   R
Sbjct: 77  YSLRCFSTTGDSVQSTPQGSPESDCVVPQRIKFKRLDKTAKHIMQIVDKEAVEEVRNL-R 136

Query: 141 EIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPL 200
           EIP+IKPGYIVQLKVEVPENKRRVS +KG+VIARRNAGLN+TFR+RRLVAGVG+ES+FPL
Sbjct: 137 EIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTFRIRRLVAGVGVESMFPL 196

Query: 201 YSPNIKEIMVLDKKKVRRAKLYYLRDKMNALKKH 234
           YSPN++EI V+DKKKVRRAKLYYLRDK+NALKKH
Sbjct: 197 YSPNLREIKVVDKKKVRRAKLYYLRDKVNALKKH 229

[Close]
BLAST of Csor.00g038580 vs. TAIR 10
Match: AT4G11630.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 214.5 bits (545), Expect = 8.8e-56
Identity = 112/153 (73.20%), Postives = 135/153 (88.24%), Query Frame = 0 

Query: 81  FSRRGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQRE 140
           ++ R  +TT   +S+ QGSP  D  +  RIKFKRLDKT+K+IMQI+DKEA+ EV ++ RE
Sbjct: 76  YASRCFSTTG--DSSVQGSPESDCVVPQRIKFKRLDKTAKHIMQIVDKEAVEEV-RSLRE 135

Query: 141 IPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLY 200
           IP+IKPGYIVQLKVEVPENKRRVS +KG+VIARRNAGLN+TFR+RRLVAGVG+ES+FPLY
Sbjct: 136 IPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTFRIRRLVAGVGVESMFPLY 195

Query: 201 SPNIKEIMVLDKKKVRRAKLYYLRDKMNALKKH 234
           SPN++EI V+DKKKVRRAKLYYLRDK+NALKKH
Sbjct: 196 SPNLREIKVVDKKKVRRAKLYYLRDKVNALKKH 225

[Close]
BLAST of Csor.00g038580 vs. TAIR 10
Match: AT1G24240.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 209.5 bits (532), Expect = 2.8e-54
Identity = 119/191 (62.30%), Postives = 145/191 (75.92%), Query Frame = 0 

Query: 52  SLSGQSKSGSLSFQSLRPHSYQLAEIA-APFSRRGIATT--------SSTESAPQGSPAV 111
           S +   K G  SF S R  +Y ++ +  A FS   +           S+T  + QGSP  
Sbjct: 33  SANESRKLGFDSFPSTRAATYLISSLKNAGFSSLAVVPKQNFSSRCFSTTGDSVQGSPES 92

Query: 112 DSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRR 171
           D  +  RIKFKRLDKT+K+IMQI+DKEA+ EV +  REIP+IKPGYIVQLKVEVPENKRR
Sbjct: 93  DCVVPQRIKFKRLDKTAKHIMQIVDKEAVEEV-RTLREIPEIKPGYIVQLKVEVPENKRR 152

Query: 172 VSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYY 231
           VS +KG+VIARRNAGLN+TFR+RRLVAGVG+ES+FPLYSPN++ I V+DKKKVRRAKLYY
Sbjct: 153 VSIVKGVVIARRNAGLNSTFRIRRLVAGVGVESMFPLYSPNLRVIKVVDKKKVRRAKLYY 212

Query: 232 LRDKMNALKKH 234
           LR+K+NALKKH
Sbjct: 213 LREKVNALKKH 222

[Close]
BLAST of Csor.00g038580 vs. TAIR 10
Match: AT4G17560.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 131.7 bits (330), Expect = 7.5e-31
Identity = 64/109 (58.72%), Postives = 92/109 (84.40%), Query Frame = 0 

Query: 122 IMQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTT 181
           +M IL+++AI EV +  R +P+I+ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT
Sbjct: 114 VMGILNQKAI-EVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTT 173

Query: 182 FRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYYLRDKMNAL 231
            R+RR++AG+G+E +FP+YSPNIKEI V+  +KVRRA+LYYLRDK+  L
Sbjct: 174 IRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRL 221

[Close]
BLAST of Csor.00g038580 vs. TAIR 10
Match: AT5G47190.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 131.3 bits (329), Expect = 9.8e-31
Identity = 64/109 (58.72%), Postives = 91/109 (83.49%), Query Frame = 0 

Query: 122 IMQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTT 181
           IM +L+K+AI EV +  R +P ++ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT
Sbjct: 118 IMGLLNKKAI-EVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTT 177

Query: 182 FRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYYLRDKMNAL 231
            R+RR++AG+G+E +FP+YSPNIKEI V+  +KVRRA+LYYLRDK+  L
Sbjct: 178 IRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRL 225

The following BLAST results are available for this feature:
BLAST of Csor.00g038580 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8W4631.1e-2958.7250S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At... [more]
Q8RXX51.4e-2958.7250S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At... [more]
P824132.0e-2840.1050S ribosomal protein L19, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL19 P... [more]
A5G0G78.4e-1946.2350S ribosomal protein L19 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rpl... [more]
Q2G8H19.3e-1849.0650S ribosomal protein L19 OS=Novosphingobium aromaticivorans (strain ATCC 700278... [more]
BLAST of Csor.00g038580 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6583579.12.10e-160100.0050S ribosomal protein L19, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
KAG7019281.13.49e-160100.0050S ribosomal protein L19, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
XP_022970336.17.91e-13380.3050S ribosomal protein L19-2, chloroplastic-like isoform X1 [Cucurbita maxima] >X... [more]
XP_038896029.14.82e-12475.84uncharacterized protein LOC120084206 [Benincasa hispida][more]
XP_022955270.12.16e-12073.7054S ribosomal protein subunit img1, mitochondrial-like isoform X2 [Cucurbita mos... [more]
BLAST of Csor.00g038580 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I0B33.83e-13380.3050S ribosomal protein L19-2, chloroplastic-like isoform X1 OS=Cucurbita maxima O... [more]
A0A6J1GUP71.05e-12073.7054S ribosomal protein subunit img1, mitochondrial-like isoform X2 OS=Cucurbita m... [more]
A0A6J1GVN31.54e-12073.4354S ribosomal protein subunit img1, mitochondrial-like isoform X1 OS=Cucurbita m... [more]
A0A6J1K1Y52.01e-11874.0750S ribosomal protein L19, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=... [more]
A0A1S3CHF92.85e-11872.8650S ribosomal protein L19-2, chloroplastic-like isoform X2 OS=Cucumis melo OX=36... [more]
BLAST of Csor.00g038580 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G11750.12.7e-5774.68Ribosomal protein L19 family protein [more]
AT4G11630.18.8e-5673.20Ribosomal protein L19 family protein [more]
AT1G24240.12.8e-5462.30Ribosomal protein L19 family protein [more]
AT4G17560.17.5e-3158.72Ribosomal protein L19 family protein [more]
AT5G47190.19.8e-3158.72Ribosomal protein L19 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001857Ribosomal protein L19PRINTSPR00061RIBOSOMALL19coord: 187..210
score: 39.24
coord: 128..157
score: 19.31
IPR001857Ribosomal protein L19TIGRFAMTIGR01024TIGR01024coord: 133..227
e-value: 1.8E-28
score: 96.9
IPR001857Ribosomal protein L19PFAMPF01245Ribosomal_L19coord: 133..227
e-value: 1.1E-30
score: 105.8
IPR001857Ribosomal protein L19PANTHERPTHR15680RIBOSOMAL PROTEIN L19coord: 57..230
IPR038657Ribosomal protein L19 superfamilyGENE3D2.30.30.790coord: 112..233
e-value: 3.7E-34
score: 119.3
NoneNo IPR availablePANTHERPTHR15680:SF939S RIBOSOMAL PROTEIN L19, MITOCHONDRIALcoord: 57..230
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 137..228

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g038580.m01Csor.00g038580.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome