Csor.00g037920 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g037920
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionNAC domain protein
LocationCsor_Chr09: 4590420 .. 4590644 (+)
RNA-Seq ExpressionCsor.00g037920
SyntenyCsor.00g037920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCAACAACCGGGTGCGCCATTAGCCGGTCAACGAAGCCACCTCCAAATTTGGTCAACCTCTTTGACAAGGCTGGTGGAGATAAGTTCCGGCGGAATCAAGGGAGGAGAGAGGTTTTGAGAAGGGCGTTGATGCCTCCCACCCGGAAACCCACTCTCCGGTGGCTGAATTTCCGTCCAACTCCTAGTCGGCTTTCCAATATGTCTATGGCGGAAGCTTAA

mRNA sequence

ATGAAATCAACAACCGGGTGCGCCATTAGCCGGTCAACGAAGCCACCTCCAAATTTGGTCAACCTCTTTGACAAGGCTGGTGGAGATAAGTTCCGGCGGAATCAAGGGAGGAGAGAGGTTTTGAGAAGGGCGTTGATGCCTCCCACCCGGAAACCCACTCTCCGGTGGCTGAATTTCCGTCCAACTCCTAGTCGGCTTTCCAATATGTCTATGGCGGAAGCTTAA

Coding sequence (CDS)

ATGAAATCAACAACCGGGTGCGCCATTAGCCGGTCAACGAAGCCACCTCCAAATTTGGTCAACCTCTTTGACAAGGCTGGTGGAGATAAGTTCCGGCGGAATCAAGGGAGGAGAGAGGTTTTGAGAAGGGCGTTGATGCCTCCCACCCGGAAACCCACTCTCCGGTGGCTGAATTTCCGTCCAACTCCTAGTCGGCTTTCCAATATGTCTATGGCGGAAGCTTAA

Protein sequence

MKSTTGCAISRSTKPPPNLVNLFDKAGGDKFRRNQGRREVLRRALMPPTRKPTLRWLNFRPTPSRLSNMSMAEA
Homology
BLAST of Csor.00g037920 vs. NCBI nr
Match: KAG6591981.1 (hypothetical protein SDJN03_14327, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 153 bits (386), Expect = 9.16e-47
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 1  MKSTTGCAISRSTKPPPNLVNLFDKAGGDKFRRNQGRREVLRRALMPPTRKPTLRWLNFR 60
          MKSTTGCAISRSTKPPPNLVNLFDKAGGDKFRRNQGRREVLRRALMPPTRKPTLRWLNFR
Sbjct: 1  MKSTTGCAISRSTKPPPNLVNLFDKAGGDKFRRNQGRREVLRRALMPPTRKPTLRWLNFR 60

Query: 61 PTPSRLSNMSMAEA 74
          PTPSRLSNMSMAEA
Sbjct: 61 PTPSRLSNMSMAEA 74

BLAST of Csor.00g037920 vs. NCBI nr
Match: KAG7024857.1 (hypothetical protein SDJN02_13676, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100 bits (249), Expect = 1.48e-25
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0

Query: 26 AGGDKFRRNQGRREVLRRALMPPTRKPTLRWLNFRPTPSRLSNMSMAEA 74
          AGGDKFRRNQGRREVLRRALMPPTRKPTLRWLNFRPTPSRLSNMSMAEA
Sbjct: 51 AGGDKFRRNQGRREVLRRALMPPTRKPTLRWLNFRPTPSRLSNMSMAEA 99

BLAST of Csor.00g037920 vs. NCBI nr
Match: KAA0036871.1 (uncharacterized protein E6C27_scaffold20G001820 [Cucumis melo var. makuwa] >TYJ95931.1 uncharacterized protein E5676_scaffold110G002460 [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 2.05e-18
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 0

Query: 28 GDKFRRNQGRREVLRRALMPPTRKPTLRWLNFRPTPSRLSNMSMAEA 74
          GD+ RRNQG REVLRRALMPP+R+PTLRW+NFRPTPSRLS MSMAE+
Sbjct: 52 GDRCRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMAES 98

BLAST of Csor.00g037920 vs. NCBI nr
Match: XP_011652880.1 (uncharacterized protein LOC105435142 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 2.90e-18
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 0

Query: 28 GDKFRRNQGRREVLRRALMPPTRKPTLRWLNFRPTPSRLSNMSMAEA 74
          GD+ RRNQG REVLRRALMPP+R+PTLRW+NFRPTPSRLS MSMAE+
Sbjct: 52 GDRCRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES 98

BLAST of Csor.00g037920 vs. NCBI nr
Match: KGN60027.2 (hypothetical protein Csa_001878 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 1.26e-17
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 0

Query: 28 GDKFRRNQGRREVLRRALMPPTRKPTLRWLNFRPTPSRLSNMSMAE 73
          GD+ RRNQG REVLRRALMPP+R+PTLRW+NFRPTPSRLS MSMAE
Sbjct: 52 GDRCRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAE 97

BLAST of Csor.00g037920 vs. ExPASy TrEMBL
Match: A0A5A7T5L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002460 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.91e-19
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 0

Query: 28 GDKFRRNQGRREVLRRALMPPTRKPTLRWLNFRPTPSRLSNMSMAEA 74
          GD+ RRNQG REVLRRALMPP+R+PTLRW+NFRPTPSRLS MSMAE+
Sbjct: 52 GDRCRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMAES 98

BLAST of Csor.00g037920 vs. ExPASy TrEMBL
Match: A0A0A0LD23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852440 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.41e-18
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 0

Query: 28 GDKFRRNQGRREVLRRALMPPTRKPTLRWLNFRPTPSRLSNMSMAEA 74
          GD+ RRNQG REVLRRALMPP+R+PTLRW+NFRPTPSRLS MSMAE+
Sbjct: 52 GDRCRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES 98

BLAST of Csor.00g037920 vs. ExPASy TrEMBL
Match: A0A068UC67 (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00021180001 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.03e-14
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 0

Query: 29  DKFRRNQGRREVLRRALMPPTRKPTLRWLNFRPTPSRLSNMSM 71
           DKFRR Q ++E+LRRAL PP R+PTLRWL+FRPTPSRL NMSM
Sbjct: 61  DKFRRKQAKKEILRRALTPPVRRPTLRWLDFRPTPSRLRNMSM 103

BLAST of Csor.00g037920 vs. ExPASy TrEMBL
Match: B9N1L2 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G404500 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.63e-13
Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = 0

Query: 29  DKFRRNQGRREVLRRALMPPTRKPTLRWLNFRPTPSRLSNMSMA 72
           DK RRNQ   E+LRRAL PP R+ TLRW NF+PTPSRLSNMSMA
Sbjct: 65  DKLRRNQANTEILRRALAPPNRRLTLRWFNFQPTPSRLSNMSMA 108

BLAST of Csor.00g037920 vs. ExPASy TrEMBL
Match: A0A4U5P590 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000228140 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.63e-13
Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = 0

Query: 29  DKFRRNQGRREVLRRALMPPTRKPTLRWLNFRPTPSRLSNMSMA 72
           DK RRNQ   E+LRRAL PP R+ TLRW NF+PTPSRLSNMSMA
Sbjct: 65  DKLRRNQANTEILRRALAPPNRRLTLRWFNFQPTPSRLSNMSMA 108

BLAST of Csor.00g037920 vs. TAIR 10
Match: AT3G15518.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 9.7e-09
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 0

Query: 32  RRNQGRREVLRRALMPPTRKPTLRWLNFRPTPSRLSNMS 71
           + + G REVLRRAL PP R+  LRWLNFRPTPSRL  MS
Sbjct: 66  KASDGSREVLRRALTPPIRRMNLRWLNFRPTPSRLCKMS 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6591981.19.16e-47100.00hypothetical protein SDJN03_14327, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7024857.11.48e-25100.00hypothetical protein SDJN02_13676, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0036871.12.05e-1882.98uncharacterized protein E6C27_scaffold20G001820 [Cucumis melo var. makuwa] >TYJ9... [more]
XP_011652880.12.90e-1882.98uncharacterized protein LOC105435142 [Cucumis sativus][more]
KGN60027.21.26e-1784.78hypothetical protein Csa_001878 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A5A7T5L79.91e-1982.98Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LD231.41e-1882.98Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852440 PE=4 SV=1[more]
A0A068UC671.03e-1476.74Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00021180001 PE=4 ... [more]
B9N1L22.63e-1375.00Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G404500 PE=4 ... [more]
A0A4U5P5902.63e-1375.00Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000228140 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G15518.19.7e-0969.23unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g037920.m01Csor.00g037920.m01mRNA