Csor.00g036430 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g036430
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionGPI-anchored protein LORELEI
LocationCsor_Chr09: 5664745 .. 5665968 (+)
RNA-Seq ExpressionCsor.00g036430
SyntenyCsor.00g036430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCTTCCTCTTCCTTCTCCTTCTTTCAATATTCTTCACTGCGGCCGCCTCCACCGCTGCCATCGCTGCCACGGCCCCCGCTCCTGCTCCAGCTTCCCCTTCAGGTACTCAGAATTTGTGTTTAGATTTTCGAATTTATATGCTCTGTAGATTCTTAAACACATGAATTATTCAATGAGACTGTTGTAATGTGCATATCCTCTAATAACCATTGGATCTAAGTTCGAGATCCTTCCTCCTCATGCATCAAACGGTGAAAAATTGTAAACAAGAAAGATCCGAAGCGAAGATATTTAAAATTTTGTGTTTGCATTGAGTAACCAAAATTTTTTTTTTAAAAAATACAAGATTTAATATTAATAGACTTTCAATTTTGATTTATCAATAGAAAAATAAAACGGGACAAGGTTAAATTAGTAATTTACCTCTAAATCATATGAAATTCTACCTCTTAACATACCGACACTTCAAAAACGTTGTTTGTATATCTAAAATGTTCTATTTCTACTTATTATAACTCTAACAACATTCTATTTCAGTTAAGACATGTACTTTGATCAATAAGTTAGGAACTCAATTTGTGTATAGTCTCACATGATTTTCAAAATTGAATAGTAATACACATTCAATTTTGATTTATCTGTAGAAAAATAAAACGGGACAAGGTTAAATTAGTAATTGACCTCTAAATCAAATGAAATTCCGTTTAACGTTTGTATATCTAAAATGCTCTAACTCTAACAACATTCGACATACTTTGATCAATAAATTAGGAACTCAAATTTTGTATACAGCATCACATTGTTTTTCGATTTTTACATGTCAATGAAATTTAATGAAACAAAACGCTCGCTCGTTCAAAAAGTTCTCGGAGTTTTGGGTACATAATTAAAGGTTAATGCAGCTTGTCCTCCAGTGGAGGCTGAGTATTGCCCAGTGGAGTTTGAATTTATGAACTACAGCATCATCACAAGCAAGTGCAAAGGGCCTGAATACCCAGCCAATCTTCGCTGCTCAGCTCTGGAAGAATTTGGTTGCCCCTACGCCAATTATATCAATGATTTAACCAATAACTGTGCCTCAATCATGTTCACTTATATTCATCTCTATGGAAACTACCCATCTGGCCTCTCTTTGCCTCCCTCTGCGTCAAAGAATCCATTGGTCTTCAATGCTCTAAAGCTAACTAAGCATCTTCCCACATTCATCCTTTGTATCTGA

mRNA sequence

ATGCTTCTTCCTCTTCCTTCTCCTTCTTTCAATATTCTTCACTGCGGCCGCCTCCACCGCTGCCATCGCTGCCACGGCCCCCGCTCCTGCTCCAGCTTCCCCTTCAGCATCATCACAAGCAAGTGCAAAGGGCCTGAATACCCAGCCAATCTTCGCTGCTCAGCTCTGGAAGAATTTGGTTGCCCCTACGCCAATTATATCAATGATTTAACCAATAACTGTGCCTCAATCATGTTCACTTATATTCATCTCTATGGAAACTACCCATCTGGCCTCTCTTTGCCTCCCTCTGCGTCAAAGAATCCATTGGTCTTCAATGCTCTAAAGCTAACTAAGCATCTTCCCACATTCATCCTTTGTATCTGA

Coding sequence (CDS)

ATGCTTCTTCCTCTTCCTTCTCCTTCTTTCAATATTCTTCACTGCGGCCGCCTCCACCGCTGCCATCGCTGCCACGGCCCCCGCTCCTGCTCCAGCTTCCCCTTCAGCATCATCACAAGCAAGTGCAAAGGGCCTGAATACCCAGCCAATCTTCGCTGCTCAGCTCTGGAAGAATTTGGTTGCCCCTACGCCAATTATATCAATGATTTAACCAATAACTGTGCCTCAATCATGTTCACTTATATTCATCTCTATGGAAACTACCCATCTGGCCTCTCTTTGCCTCCCTCTGCGTCAAAGAATCCATTGGTCTTCAATGCTCTAAAGCTAACTAAGCATCTTCCCACATTCATCCTTTGTATCTGA

Protein sequence

MLLPLPSPSFNILHCGRLHRCHRCHGPRSCSSFPFSIITSKCKGPEYPANLRCSALEEFGCPYANYINDLTNNCASIMFTYIHLYGNYPSGLSLPPSASKNPLVFNALKLTKHLPTFILCI
Homology
BLAST of Csor.00g036430 vs. ExPASy Swiss-Prot
Match: Q6NLF4 (GPI-anchored protein LLG2 OS=Arabidopsis thaliana OX=3702 GN=LLG2 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.3e-17
Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 35  FSIITSKCKGPEYPANLRCSALEEFGCPYANYINDLTNNCASIMFTYIHLYGNYPSGL 93
           ++IITS+CKGP YPAN+ CSA ++F CP+A  +ND  N+CAS MF+YI+LYG YP G+
Sbjct: 53  YTIITSRCKGPNYPANVCCSAFKDFACPFAEVLNDEKNDCASTMFSYINLYGRYPPGI 110

BLAST of Csor.00g036430 vs. ExPASy Swiss-Prot
Match: Q9M0I0 (GPI-anchored protein LLG3 OS=Arabidopsis thaliana OX=3702 GN=LLG3 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.9e-16
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 0

Query: 35  FSIITSKCKGPEYPANLRCSALEEFGCPYANYINDLTNNCASIMFTYIHLYGNYPSGL 93
           ++IITSKCKGP YPA + CSA ++F CP+A  +ND   +CAS MF+YI+LYG YP G+
Sbjct: 57  YTIITSKCKGPNYPAKVCCSAFKDFACPFAEVLNDEKTDCASTMFSYINLYGRYPPGI 114

BLAST of Csor.00g036430 vs. ExPASy Swiss-Prot
Match: Q9FKT1 (GPI-anchored protein LLG1 OS=Arabidopsis thaliana OX=3702 GN=LLG1 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.0e-15
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 0

Query: 35  FSIITSKCKGPEYPANLRCSALEEFGCPYANYINDLTNNCASIMFTYIHLYGNYPSGL 93
           ++IITSKCKGP+YP    C A ++F CPY + +NDL+++CA+ MF+YI+LYG YP GL
Sbjct: 58  YTIITSKCKGPKYPPKECCGAFKDFACPYTDQLNDLSSDCATTMFSYINLYGKYPPGL 115

BLAST of Csor.00g036430 vs. ExPASy Swiss-Prot
Match: B3GS44 (GPI-anchored protein LORELEI OS=Arabidopsis thaliana OX=3702 GN=LRE PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.9e-15
Identity = 30/58 (51.72%), Postives = 45/58 (77.59%), Query Frame = 0

Query: 35  FSIITSKCKGPEYPANLRCSALEEFGCPYANYINDLTNNCASIMFTYIHLYGNYPSGL 93
           + ++T +CKGP +PA   CSA +EF CPY + IND+ ++CA  MF+Y+++YGNYP+GL
Sbjct: 55  YKVLTKRCKGPAFPAKECCSAFKEFACPYVSQINDMNSDCAQTMFSYMNIYGNYPTGL 112

BLAST of Csor.00g036430 vs. NCBI nr
Match: KAG6592130.1 (GPI-anchored protein LLG2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 261 bits (667), Expect = 3.73e-88
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0

Query: 1   MLLPLPSPSFNILHCGRLHRCHRCHGPRSCSSFPFSIITSKCKGPEYPANLRCSALEEFG 60
           MLLPLPSPSFNILHCGRLHRCHRCHGPRSCSSFPFSIITSKCKGPEYPANLRCSALEEFG
Sbjct: 1   MLLPLPSPSFNILHCGRLHRCHRCHGPRSCSSFPFSIITSKCKGPEYPANLRCSALEEFG 60

Query: 61  CPYANYINDLTNNCASIMFTYIHLYGNYPSGLSLPPSASKNPLVFNALKLTKHLPTFILC 120
           CPYANYINDLTNNCASIMFTYIHLYGNYPSGLSLPPSASKNPLVFNALKLTKHLPTFILC
Sbjct: 61  CPYANYINDLTNNCASIMFTYIHLYGNYPSGLSLPPSASKNPLVFNALKLTKHLPTFILC 120

BLAST of Csor.00g036430 vs. NCBI nr
Match: XP_022936220.1 (GPI-anchored protein LLG1-like [Cucurbita moschata])

HSP 1 Score: 124 bits (312), Expect = 7.08e-34
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0

Query: 35  FSIITSKCKGPEYPANLRCSALEEFGCPYANYINDLTNNCASIMFTYIHLYGNYPSGL 92
           +SIITSKCKGPEYPANL CSALEEFGCPYANYINDLTNNCASIMFTYIHLYGNYPSGL
Sbjct: 60  YSIITSKCKGPEYPANLCCSALEEFGCPYANYINDLTNNCASIMFTYIHLYGNYPSGL 117

BLAST of Csor.00g036430 vs. NCBI nr
Match: XP_022139426.1 (GPI-anchored protein LLG2-like [Momordica charantia])

HSP 1 Score: 103 bits (258), Expect = 4.05e-25
Identity = 45/58 (77.59%), Postives = 52/58 (89.66%), Query Frame = 0

Query: 35  FSIITSKCKGPEYPANLRCSALEEFGCPYANYINDLTNNCASIMFTYIHLYGNYPSGL 92
           ++IITSKCKGPEYPANL CSAL EF CPYA Y+NDL+N+CAS MF+YI+LYG YPSGL
Sbjct: 90  YTIITSKCKGPEYPANLCCSALAEFACPYAKYLNDLSNDCASTMFSYINLYGKYPSGL 147

BLAST of Csor.00g036430 vs. NCBI nr
Match: XP_023524003.1 (GPI-anchored protein LLG1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102 bits (254), Expect = 4.39e-25
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 0

Query: 35  FSIITSKCKGPEYPANLRCSALEEFGCPYANYINDLTNNCASIMFTYIHLYGNYPSGL 92
           ++IITSKCKGP+Y ANL CSAL EF CPYA Y+NDLTNNCAS MFTYI+LYG YP GL
Sbjct: 58  YTIITSKCKGPKYTANLCCSALAEFACPYAKYLNDLTNNCASTMFTYINLYGKYPPGL 115

BLAST of Csor.00g036430 vs. NCBI nr
Match: KAG7037290.1 (GPI-anchored protein LLG1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 101 bits (251), Expect = 1.94e-24
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 0

Query: 35  FSIITSKCKGPEYPANLRCSALEEFGCPYANYINDLTNNCASIMFTYIHLYGNYPSGL 92
           ++IITSKCKGP+Y ANL CSAL EF CPYA Y+N LTNNCAS MFTYI+LYGNYP GL
Sbjct: 74  YTIITSKCKGPKYTANLCCSALAEFECPYAKYLNHLTNNCASTMFTYINLYGNYPPGL 131

BLAST of Csor.00g036430 vs. ExPASy TrEMBL
Match: A0A6J1FD10 (GPI-anchored protein LLG1-like OS=Cucurbita moschata OX=3662 GN=LOC111442892 PE=4 SV=1)

HSP 1 Score: 124 bits (312), Expect = 3.43e-34
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0

Query: 35  FSIITSKCKGPEYPANLRCSALEEFGCPYANYINDLTNNCASIMFTYIHLYGNYPSGL 92
           +SIITSKCKGPEYPANL CSALEEFGCPYANYINDLTNNCASIMFTYIHLYGNYPSGL
Sbjct: 60  YSIITSKCKGPEYPANLCCSALEEFGCPYANYINDLTNNCASIMFTYIHLYGNYPSGL 117

BLAST of Csor.00g036430 vs. ExPASy TrEMBL
Match: A0A6J1CCM2 (GPI-anchored protein LLG2-like OS=Momordica charantia OX=3673 GN=LOC111010362 PE=4 SV=1)

HSP 1 Score: 103 bits (258), Expect = 1.96e-25
Identity = 45/58 (77.59%), Postives = 52/58 (89.66%), Query Frame = 0

Query: 35  FSIITSKCKGPEYPANLRCSALEEFGCPYANYINDLTNNCASIMFTYIHLYGNYPSGL 92
           ++IITSKCKGPEYPANL CSAL EF CPYA Y+NDL+N+CAS MF+YI+LYG YPSGL
Sbjct: 90  YTIITSKCKGPEYPANLCCSALAEFACPYAKYLNDLSNDCASTMFSYINLYGKYPSGL 147

BLAST of Csor.00g036430 vs. ExPASy TrEMBL
Match: A0A6J1J052 (GPI-anchored protein LLG1-like OS=Cucurbita maxima OX=3661 GN=LOC111480716 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.65e-24
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 0

Query: 35  FSIITSKCKGPEYPANLRCSALEEFGCPYANYINDLTNNCASIMFTYIHLYGNYPSG 91
           ++IIT KCKGP+Y AN+ CSAL EF CPYA Y+NDLTNNCAS MFTYI+LYG YP G
Sbjct: 52  YTIITGKCKGPKYTANICCSALAEFACPYAKYLNDLTNNCASTMFTYINLYGKYPPG 108

BLAST of Csor.00g036430 vs. ExPASy TrEMBL
Match: A0A2I0A4N1 (GPI-anchored protein LORELEI OS=Apostasia shenzhenica OX=1088818 GN=LRE PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.32e-23
Identity = 41/58 (70.69%), Postives = 51/58 (87.93%), Query Frame = 0

Query: 35 FSIITSKCKGPEYPANLRCSALEEFGCPYANYINDLTNNCASIMFTYIHLYGNYPSGL 92
          +S+ITSKCKGP+Y A+L CSAL+EF CPYA+ +NDLTN+CAS MF+YI+LYG YP GL
Sbjct: 3  YSVITSKCKGPQYRADLCCSALKEFACPYADQLNDLTNDCASTMFSYINLYGKYPPGL 60

BLAST of Csor.00g036430 vs. ExPASy TrEMBL
Match: A0A199UVP9 (GPI-anchored protein LORELEI OS=Ananas comosus OX=4615 GN=ACMD2_11860 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.07e-22
Identity = 46/85 (54.12%), Postives = 58/85 (68.24%), Query Frame = 0

Query: 35  FSIITSKCKGPEYPANLRCSALEEFGCPYANYINDLTNNCASIMFTYIHLYGNYP----- 94
           ++IITSKCKGP+YPA+L CSA +EF CPY+N +ND TN+CAS MF+YI+LYG YP     
Sbjct: 60  YTIITSKCKGPQYPASLCCSAFKEFACPYSNELNDGTNDCASTMFSYINLYGKYPPGLFA 119

Query: 95  -------SGLSLPPSASKNPLVFNA 107
                   GLS PP  S++    NA
Sbjct: 120 SECREGKEGLSCPPELSQSQKAVNA 144

BLAST of Csor.00g036430 vs. TAIR 10
Match: AT2G20700.1 (LORELEI-LIKE-GPI ANCHORED PROTEIN 2 )

HSP 1 Score: 88.6 bits (218), Expect = 3.8e-18
Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 35  FSIITSKCKGPEYPANLRCSALEEFGCPYANYINDLTNNCASIMFTYIHLYGNYPSGL 93
           ++IITS+CKGP YPAN+ CSA ++F CP+A  +ND  N+CAS MF+YI+LYG YP G+
Sbjct: 53  YTIITSRCKGPNYPANVCCSAFKDFACPFAEVLNDEKNDCASTMFSYINLYGRYPPGI 110

BLAST of Csor.00g036430 vs. TAIR 10
Match: AT4G28280.1 (LORELEI-LIKE-GPI ANCHORED PROTEIN 3 )

HSP 1 Score: 85.1 bits (209), Expect = 4.2e-17
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 0

Query: 35 FSIITSKCKGPEYPANLRCSALEEFGCPYANYINDLTNNCASIMFTYIHLYGNYPSGL 93
          ++IITSKCKGP YPA + CSA ++F CP+A  +ND   +CAS MF+YI+LYG YP G+
Sbjct: 31 YTIITSKCKGPNYPAKVCCSAFKDFACPFAEVLNDEKTDCASTMFSYINLYGRYPPGI 88

BLAST of Csor.00g036430 vs. TAIR 10
Match: AT4G28280.2 (LORELEI-LIKE-GPI ANCHORED PROTEIN 3 )

HSP 1 Score: 85.1 bits (209), Expect = 4.2e-17
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 0

Query: 35  FSIITSKCKGPEYPANLRCSALEEFGCPYANYINDLTNNCASIMFTYIHLYGNYPSGL 93
           ++IITSKCKGP YPA + CSA ++F CP+A  +ND   +CAS MF+YI+LYG YP G+
Sbjct: 57  YTIITSKCKGPNYPAKVCCSAFKDFACPFAEVLNDEKTDCASTMFSYINLYGRYPPGI 114

BLAST of Csor.00g036430 vs. TAIR 10
Match: AT5G56170.1 (LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 )

HSP 1 Score: 84.3 bits (207), Expect = 7.1e-17
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 0

Query: 35  FSIITSKCKGPEYPANLRCSALEEFGCPYANYINDLTNNCASIMFTYIHLYGNYPSGL 93
           ++IITSKCKGP+YP    C A ++F CPY + +NDL+++CA+ MF+YI+LYG YP GL
Sbjct: 58  YTIITSKCKGPKYPPKECCGAFKDFACPYTDQLNDLSSDCATTMFSYINLYGKYPPGL 115

BLAST of Csor.00g036430 vs. TAIR 10
Match: AT4G26466.1 (lorelei )

HSP 1 Score: 82.8 bits (203), Expect = 2.1e-16
Identity = 30/58 (51.72%), Postives = 45/58 (77.59%), Query Frame = 0

Query: 35  FSIITSKCKGPEYPANLRCSALEEFGCPYANYINDLTNNCASIMFTYIHLYGNYPSGL 93
           + ++T +CKGP +PA   CSA +EF CPY + IND+ ++CA  MF+Y+++YGNYP+GL
Sbjct: 55  YKVLTKRCKGPAFPAKECCSAFKEFACPYVSQINDMNSDCAQTMFSYMNIYGNYPTGL 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q6NLF45.3e-1760.34GPI-anchored protein LLG2 OS=Arabidopsis thaliana OX=3702 GN=LLG2 PE=1 SV=1[more]
Q9M0I05.9e-1658.62GPI-anchored protein LLG3 OS=Arabidopsis thaliana OX=3702 GN=LLG3 PE=2 SV=1[more]
Q9FKT11.0e-1556.90GPI-anchored protein LLG1 OS=Arabidopsis thaliana OX=3702 GN=LLG1 PE=1 SV=1[more]
B3GS442.9e-1551.72GPI-anchored protein LORELEI OS=Arabidopsis thaliana OX=3702 GN=LRE PE=1 SV=1[more]
Match NameE-valueIdentityDescription
KAG6592130.13.73e-88100.00GPI-anchored protein LLG2, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022936220.17.08e-3496.55GPI-anchored protein LLG1-like [Cucurbita moschata][more]
XP_022139426.14.05e-2577.59GPI-anchored protein LLG2-like [Momordica charantia][more]
XP_023524003.14.39e-2577.59GPI-anchored protein LLG1-like [Cucurbita pepo subsp. pepo][more]
KAG7037290.11.94e-2477.59GPI-anchored protein LLG1, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
A0A6J1FD103.43e-3496.55GPI-anchored protein LLG1-like OS=Cucurbita moschata OX=3662 GN=LOC111442892 PE=... [more]
A0A6J1CCM21.96e-2577.59GPI-anchored protein LLG2-like OS=Momordica charantia OX=3673 GN=LOC111010362 PE... [more]
A0A6J1J0523.65e-2473.68GPI-anchored protein LLG1-like OS=Cucurbita maxima OX=3661 GN=LOC111480716 PE=4 ... [more]
A0A2I0A4N14.32e-2370.69GPI-anchored protein LORELEI OS=Apostasia shenzhenica OX=1088818 GN=LRE PE=4 SV=... [more]
A0A199UVP91.07e-2254.12GPI-anchored protein LORELEI OS=Ananas comosus OX=4615 GN=ACMD2_11860 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G20700.13.8e-1860.34LORELEI-LIKE-GPI ANCHORED PROTEIN 2 [more]
AT4G28280.14.2e-1758.62LORELEI-LIKE-GPI ANCHORED PROTEIN 3 [more]
AT4G28280.24.2e-1758.62LORELEI-LIKE-GPI ANCHORED PROTEIN 3 [more]
AT5G56170.17.1e-1756.90LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 [more]
AT4G26466.12.1e-1651.72lorelei [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039307GPI-anchored protein LORELEI-likePANTHERPTHR31533GPI-ANCHORED PROTEIN LLG1-RELATED-RELATEDcoord: 27..92
NoneNo IPR availablePANTHERPTHR31533:SF23GPI-ANCHORED PROTEIN LLG1coord: 27..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g036430.m01Csor.00g036430.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane