Csor.00g036140 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g036140
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	ribosome maturation protein SBDS
Location	Csor_Chr09: 5826263 .. 5830047 (-)
RNA-Seq Expression	Csor.00g036140
Synteny	Csor.00g036140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCGATCGCTGGTGCAGCCGATCGGGCAGAAGAGGCTGACGAACGTGGCGGTTGTTCGTTTGAAGAGACACGGTCTGCGCTTTGAGATCGCTTGTTACAAGAACAAGGTCCTTTCTTGGCGCTCTGGCGTGTAAGCTCCCTGCCCACCTCTTTTAGACCCTGTGATTTCACTTTCTTAGTTATTGGATTTTCTCTGGTTGTTGTTTGCTAGGTTCTTATGGATAGAAGATTGTAAAGGCTTGATGTTATATTAGGATTGATTTTGTAGATATATTTGTCAAATTGGAGGATTTCATTGGCTAACGGATTCGAAAAAATTTCTTTAAATTGCATAATGTGTATGACACAGCTTTGATTGTGGTTATATGTGTCGGTTTGCTAATTGAGAGTTTGGGGAGGAAGAAGAGTTGAGATTATCTAACCTCCAATTGCACACGATTATGCCCAAAATTTTGATGTTCTTCTCATTTTCTTGGCAATCAAACCTAATAGGGTGGTAGGTTAGGTGGTTGTCTCAGCTGTGTGTAAGAGTGATAGATTCTTACTGTTTTAATAGTTTCTTTCTAGCTCTTTTGTGCAAGGGAAGGTATCTTTTTTTTTATTTGTTGAGTTCAACAACAGGGGTTTGAACTTTTGGGTGGTTTTTAGCGAATATTCTCATGGTATTAGAGCCCCTCATTTTAGCCACCAATATCCTTCTCACTTTTGAGTCTTGGTACCATGAGAATGTTTGCTAAAATCACCGCAACTAAAGGGGTTAGGATTCTCTATTTATAATCATTTACATATTCAAATAAATGGAATGAACAATAAATGGATACACGATATGGTCAAATATGATACCTATGGTAAACAGTAATGGAAAATTAAATATCTTCATTCATACCATATATTTGCCTATAATAAGGGTCAAGTATGATACATATGGTAAACCATAATTCAAGATTAAATATCCTCAAACACTTATAACCTATTGATCGAGGGTAACGTGTCTTAGCATGAGTTATCCAAGTTGACATTTTTCCTTGAGAGATATTAAGTCGATACCCCATAGTTTTTACAATTTGAAAATAATTGCATGAACTATATAGTTAGCTAAAGAGCAAAAGACACTACTTTTAAACTTCATTGTTTATAACTATTCCATTGGCATGCCATTTTTAGTAGATTCCACAGTATTGCCCTTTTAGAAAATCTTATGATTGTGGGTAAATATATTAGTTAAACAGACCTCTCGTCAACTGACGACATGAGTTGGAGTGGTAATTTATTAAATTAGGTGGATGTGAATATAAACTATCAGATCATTTCGAAACTTCAGTGCTCAATTTGCAATTGGATCAAACTGCAAGGTTGTCTTTTGCAGTTTTCCTTTTGTTAATTCATTTTCCTTCCCAAATGTGTACTCATTGACCTGGCATAGTTGTCAACTATGAACATGATAATGGATGTTTCAACAGGGAGAAAGATTTAGATGAGGTCTTGCAATCGCAAATTGTTTATTCAAATGTTTCGAAAGGAGTTCTTGCAAAAACCAAAGATTTAAAAGCAGCTTTTGATACAGATGATCAGGCGGAAATTTGTTTGAAGGTTCGTGGAATTTTTTTTCTAGTTTTTTTTATGAGTGTATGATTTTGTGGTGACTTTTTATGAACTGATGAGATCATCAACTTTCTGGTACTAGATTCTTAAAGAAGGGGAACTTCAAATTGCAGGGAAGGAGAGGGAGGCTCAATTATCTAATCAGTTCCGTGATATTGCAACCATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACGATTAGTATGATTGAGCGACTCATGCGTGAAATTCATTTTGCTGTTGATCCAAATCACAGCTCAAAGAAACAGGTAGCTTGATACTTTTTGCTGTATGTGATATTGACATTCTTCTGCTCGAAATTTGTATAATTCTAAATTCAAGGTCGCAATATTAATCTGACATTTTTTTTTTTGAAATGCAGGCATTAGAGGTCATTCATGAGCTTCAGAAACAGTTCCCAATTAAACGTTCGCCTATGAGAATACGCTATACTGTACCTGAACAGAACTTTCCATCTCTCCTTGATAAGTTGAATTCCTGGAGTGCTAGTATCATTTCCAATGATCAGTCTGGAAATCAGCAACGAAGCGTTGTAAGTCTGAGTCTTCTCATTGATGCTTTGAATATTTTCTTTCCCTCCAACTTGCTAATGGTATCATAATTTCACTCTTTCTCCTTGAACAAGTTGAACTGTTGTATTGCATATTGGTTCCTGCATGGATGTCAATGTGCTAGTAGTTGCCCATGTGTTGGACTAGGCCATGATAAATCGTGTGAACCAAGATTTTAGCAAGCTAGCCATTTCGACCTAGCCATGAACGTCGTTCTTCGTGAATGATTCCCTCTTGATGTTTGTGTGATAGAAATTTCAAGCAAGGTTTAGAAATTTAGTTCTGCTTAAAACCAGCTGGTGCTAAGAAGATTTTGAAAATGTGAATATTAGTTTCCCTTGCTCATATCATTGTGTCATTGCTTCTTTTTGCTGGAGGGGGATTGAGGGAAGGAAATTGTTTGAAACACTATACTAGTACATGGATGCATCAGTACTGTTTTTTTTTTTAAAAAAAAAAATAATTGCCATAATCACTGCCATCAAAGAGTTGTAGGTTATTGTAACAGCCCAAACTGCTAACAGTTATTGTCCTCTTTGGACTTTTCTTTTCGGAGTTCCCTTCAAGTTTTTAAAATAGCTAGGGAGAGGTTTTCACACCCTTATAAAGAATATTTCGTTCTCCTCTCCAAACGATGTGAGATCTCATAATCCACCCTCCCATTAGGGCTCAGTGTCCTTGCTTGCACACCGTCTCATGTCCACTCTCCTTCGAGGTTCAGCCTCCTTGTGGGTACATTGTCCGGTGTCTGGCTCTGATACCATTTGTAATAAGCTAAGTTCACCGCTAGCAGATATTGTCCTCTTTGGGCTTCAGGCTGTTACAATGGTATCAGAGCCAGACGCTGGGTGATGTGTTAGCGAGGAGGCTGAACACCCCAGGGGGTTCATTAAATCATTTTTGTGTAGTCAAGTTTCATGGTTTCTCGAGTCATTTCCTTGATAGCACTGAAGCTTCTGTTTTACAAGGGGGCTGTTTTTATCTACTTCTTTGTTGGTTCAAATGCTCGGTGATCGAGTATAGACTCATGAGTTCGCTATTGATTGTTAACCATCTCTTCATATGTGCACTTCTCATTAAGTACTGACGATGCCTTACATTCAATAATACTTGGAACTTAGTTTTTGTGGTTGATTGTTGCAACAGATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGTAATCCTTTAATGAGCGAACTGCAAGGCAAGTTTGAAGTTCTCTCTTTCTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATACGACGATGACGATTTTGAGAATGTGGAGCTGCCACCCCGACACGTCAAGAAATCAGAATCAGCTATTCCTCAGCTAAGCGAAGCTTTACAAAAACAGGCAATCTCTGTCGATGGCGGGAATACCGTAAAGGAGGGAAAACGCTGCAGCACATGCAACGTAGTCGTGGGGGATGCTATTCAGTTTAGAGAGCATCACAAGAGTGAATGGCATAAGCATAACGTCAAGCGCAAAACCAAGAATCTCCCTCCTTTAACCGAAGAAGAGTGCATGGTAGAAATAGCTATGGGCGACTCGGAGTCCGACCTGAAGGAGTATTCATTTTGA

mRNA sequence

ATGTCCCGATCGCTGGTGCAGCCGATCGGGCAGAAGAGGCTGACGAACGTGGCGGTTGTTCGTTTGAAGAGACACGGTCTGCGCTTTGAGATCGCTTGTTACAAGAACAAGGTCCTTTCTTGGCGCTCTGGCGTGGAGAAAGATTTAGATGAGGTCTTGCAATCGCAAATTGTTTATTCAAATGTTTCGAAAGGAGTTCTTGCAAAAACCAAAGATTTAAAAGCAGCTTTTGATACAGATGATCAGGCGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAATTGCAGGGAAGGAGAGGGAGGCTCAATTATCTAATCAGTTCCGTGATATTGCAACCATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACGATTAGTATGATTGAGCGACTCATGCGTGAAATTCATTTTGCTGTTGATCCAAATCACAGCTCAAAGAAACAGGCATTAGAGGTCATTCATGAGCTTCAGAAACAGTTCCCAATTAAACGTTCGCCTATGAGAATACGCTATACTGTACCTGAACAGAACTTTCCATCTCTCCTTGATAAGTTGAATTCCTGGAGTGCTAGTATCATTTCCAATGATCAGTCTGGAAATCAGCAACGAAGCGTTATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGTAATCCTTTAATGAGCGAACTGCAAGGCAAGTTTGAAGTTCTCTCTTTCTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATACGACGATGACGATTTTGAGAATGTGGAGCTGCCACCCCGACACGTCAAGAAATCAGAATCAGCTATTCCTCAGCTAAGCGAAGCTTTACAAAAACAGGCAATCTCTGTCGATGGCGGGAATACCGTAAAGGAGGGAAAACGCTGCAGCACATGCAACGTAGTCGTGGGGGATGCTATTCAGTTTAGAGAGCATCACAAGAGTGAATGGCATAAGCATAACGTCAAGCGCAAAACCAAGAATCTCCCTCCTTTAACCGAAGAAGAGTGCATGGTAGAAATAGCTATGGGCGACTCGGAGTCCGACCTGAAGGAGTATTCATTTTGA

Coding sequence (CDS)

ATGTCCCGATCGCTGGTGCAGCCGATCGGGCAGAAGAGGCTGACGAACGTGGCGGTTGTTCGTTTGAAGAGACACGGTCTGCGCTTTGAGATCGCTTGTTACAAGAACAAGGTCCTTTCTTGGCGCTCTGGCGTGGAGAAAGATTTAGATGAGGTCTTGCAATCGCAAATTGTTTATTCAAATGTTTCGAAAGGAGTTCTTGCAAAAACCAAAGATTTAAAAGCAGCTTTTGATACAGATGATCAGGCGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAATTGCAGGGAAGGAGAGGGAGGCTCAATTATCTAATCAGTTCCGTGATATTGCAACCATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACGATTAGTATGATTGAGCGACTCATGCGTGAAATTCATTTTGCTGTTGATCCAAATCACAGCTCAAAGAAACAGGCATTAGAGGTCATTCATGAGCTTCAGAAACAGTTCCCAATTAAACGTTCGCCTATGAGAATACGCTATACTGTACCTGAACAGAACTTTCCATCTCTCCTTGATAAGTTGAATTCCTGGAGTGCTAGTATCATTTCCAATGATCAGTCTGGAAATCAGCAACGAAGCGTTATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGTAATCCTTTAATGAGCGAACTGCAAGGCAAGTTTGAAGTTCTCTCTTTCTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATACGACGATGACGATTTTGAGAATGTGGAGCTGCCACCCCGACACGTCAAGAAATCAGAATCAGCTATTCCTCAGCTAAGCGAAGCTTTACAAAAACAGGCAATCTCTGTCGATGGCGGGAATACCGTAAAGGAGGGAAAACGCTGCAGCACATGCAACGTAGTCGTGGGGGATGCTATTCAGTTTAGAGAGCATCACAAGAGTGAATGGCATAAGCATAACGTCAAGCGCAAAACCAAGAATCTCCCTCCTTTAACCGAAGAAGAGTGCATGGTAGAAATAGCTATGGGCGACTCGGAGTCCGACCTGAAGGAGTATTCATTTTGA

Protein sequence

MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKKSESAIPQLSEALQKQAISVDGGNTVKEGKRCSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVEIAMGDSESDLKEYSF

Homology

[Close]

BLAST of Csor.00g036140 vs. ExPASy Swiss-Prot
Match: P70122 (Ribosome maturation protein SBDS OS=Mus musculus OX=10090 GN=Sbds PE=1 SV=4)

HSP 1 Score: 251.5 bits (641), Expect = 1.4e-65
Identity = 133/247 (53.85%), Postives = 175/247 (70.85%), Query Frame = 0


Query: 4   SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVS 63
           S+  P  Q RLTNVAVVR+KR G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVS
Sbjct: 2   SIFTPTNQIRLTNVAVVRMKRGGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61

Query: 64  KGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFN 123
           KG +AK +DL +AF TDDQ EIC +IL +GE+Q++ KER  QL   FRDIATIV  K  N
Sbjct: 62  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121

Query: 124 PETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQ 183
           PETKRPYT+ +IER M++IH++V PN S+K+QALEVI +L+++  I+R+ MR+R+ +P  
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVN 181

Query: 184 NFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLM---SELQGKFEVLSF 243
               L +KL      + S D S  QQ  ++C +DP  +R+ + L+   ++ +G  EVLS 
Sbjct: 182 EGKKLKEKLKPLMKVVESEDYS--QQLEIVCLIDPGCFREIDELIKKETKGRGSLEVLSL 241

Query: 244 CLHEEGD 248
              EEGD
Sbjct: 242 KDVEEGD 246

[Close]

BLAST of Csor.00g036140 vs. ExPASy Swiss-Prot
Match: Q5RK30 (Ribosome maturation protein SBDS OS=Rattus norvegicus OX=10116 GN=Sbds PE=2 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.4e-65
Identity = 133/247 (53.85%), Postives = 175/247 (70.85%), Query Frame = 0


Query: 4   SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVS 63
           S+  P  Q RLTNVAVVR+KR G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVS
Sbjct: 2   SIFTPTNQIRLTNVAVVRMKRGGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61

Query: 64  KGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFN 123
           KG +AK +DL +AF TDDQ EIC +IL +GE+Q++ KER  QL   FRDIATIV  K  N
Sbjct: 62  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121

Query: 124 PETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQ 183
           PETKRPYT+ +IER M++IH++V PN S+K+QALEVI +L+++  I+R+ MR+R+ +P  
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFLLPVN 181

Query: 184 NFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLM---SELQGKFEVLSF 243
               L +KL      + S D S  QQ  ++C +DP  +R+ + L+   ++ +G  EVLS 
Sbjct: 182 EGKKLKEKLKPLMKVVESEDYS--QQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLSL 241

Query: 244 CLHEEGD 248
              EEGD
Sbjct: 242 KDVEEGD 246

[Close]

BLAST of Csor.00g036140 vs. ExPASy Swiss-Prot
Match: Q3SWZ6 (Ribosome maturation protein SBDS OS=Bos taurus OX=9913 GN=SBDS PE=2 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 4.1e-65
Identity = 133/247 (53.85%), Postives = 174/247 (70.45%), Query Frame = 0


Query: 4   SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVS 63
           S+  P  Q RLTNVAVVR+KR G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVS
Sbjct: 2   SIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61

Query: 64  KGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFN 123
           KG +AK +DL +AF TDDQ EIC +IL +GE+Q++ KER  QL   FRDIATIV  K  N
Sbjct: 62  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121

Query: 124 PETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQ 183
           PETKRPYT+ +IER M++IH++V PN S+K+QALEVI +L+++  I+R+ MR+R+ +P  
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVN 181

Query: 184 NFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLM---SELQGKFEVLSF 243
               L +KL      I S D    QQ  ++C +DP  +R+ + L+   ++ +G  EVLS 
Sbjct: 182 EGKKLKEKLKPLIKVIESEDY--GQQLEIVCLIDPGCFREVDELIKKETKGKGSLEVLSL 241

Query: 244 CLHEEGD 248
              EEGD
Sbjct: 242 KDVEEGD 246

[Close]

BLAST of Csor.00g036140 vs. ExPASy Swiss-Prot
Match: Q9Y3A5 (Ribosome maturation protein SBDS OS=Homo sapiens OX=9606 GN=SBDS PE=1 SV=4)

HSP 1 Score: 245.7 bits (626), Expect = 7.8e-64
Identity = 131/247 (53.04%), Postives = 173/247 (70.04%), Query Frame = 0


Query: 4   SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVS 63
           S+  P  Q RLTNVAVVR+KR G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVS
Sbjct: 2   SIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61

Query: 64  KGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFN 123
           KG +AK +DL +AF TDDQ EIC +IL +GE+Q++ KER  QL   FRDIATIV  K  N
Sbjct: 62  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121

Query: 124 PETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQ 183
           PETKRPYT+ +IER M++IH++V  N S+K+QALEVI +L+++  I+R+ MR+R+ +P  
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVN 181

Query: 184 NFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLM---SELQGKFEVLSF 243
               L +KL      I S D    QQ  ++C +DP  +R+ + L+   ++ +G  EVL+ 
Sbjct: 182 EGKKLKEKLKPLIKVIESEDY--GQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNL 241

Query: 244 CLHEEGD 248
              EEGD
Sbjct: 242 KDVEEGD 246

[Close]

BLAST of Csor.00g036140 vs. ExPASy Swiss-Prot
Match: Q5RAZ2 (Ribosome maturation protein SBDS OS=Pongo abelii OX=9601 GN=SBDS PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 7.8e-64
Identity = 131/247 (53.04%), Postives = 173/247 (70.04%), Query Frame = 0


Query: 4   SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVS 63
           S+  P  Q RLTNVAVVR+KR G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVS
Sbjct: 2   SIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61

Query: 64  KGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFN 123
           KG +AK +DL +AF TDDQ EIC +IL +GE+Q++ KER  QL   FRDIATIV  K  N
Sbjct: 62  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121

Query: 124 PETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQ 183
           PETKRPYT+ +IER M++IH++V  N S+K+QALEVI +L+++  I+R+ MR+R+ +P  
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVN 181

Query: 184 NFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLM---SELQGKFEVLSF 243
               L +KL      I S D    QQ  ++C +DP  +R+ + L+   ++ +G  EVL+ 
Sbjct: 182 EGKKLKEKLKPLIKVIESEDY--GQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNL 241

Query: 244 CLHEEGD 248
              EEGD
Sbjct: 242 KDVEEGD 246

[Close]

BLAST of Csor.00g036140 vs. NCBI nr
Match: KAG6592159.1 (Ribosome maturation protein SBDS, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 719 bits (1855), Expect = 2.59e-261
Identity = 360/360 (100.00%), Postives = 360/360 (100.00%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV 180
           TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV 180

Query: 181 PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSF 240
           PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSF
Sbjct: 181 PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSF 240

Query: 241 CLHEEGDTNVDQYDDDDFENVELPPRHVKKSESAIPQLSEALQKQAISVDGGNTVKEGKR 300
           CLHEEGDTNVDQYDDDDFENVELPPRHVKKSESAIPQLSEALQKQAISVDGGNTVKEGKR
Sbjct: 241 CLHEEGDTNVDQYDDDDFENVELPPRHVKKSESAIPQLSEALQKQAISVDGGNTVKEGKR 300

Query: 301 CSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVEIAMGDSESDLKEYSF 360
           CSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVEIAMGDSESDLKEYSF
Sbjct: 301 CSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVEIAMGDSESDLKEYSF 360

[Close]

BLAST of Csor.00g036140 vs. NCBI nr
Match: XP_022936066.1 (ribosome maturation protein SBDS [Cucurbita moschata] >KAG7025021.1 Ribosome maturation protein SBDS, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 717 bits (1851), Expect = 1.06e-260
Identity = 359/360 (99.72%), Postives = 360/360 (100.00%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV 180
           TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV 180

Query: 181 PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSF 240
           PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSF
Sbjct: 181 PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSF 240

Query: 241 CLHEEGDTNVDQYDDDDFENVELPPRHVKKSESAIPQLSEALQKQAISVDGGNTVKEGKR 300
           CLHEEGDTNVDQYDDDDFENVELPPRHVK+SESAIPQLSEALQKQAISVDGGNTVKEGKR
Sbjct: 241 CLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTVKEGKR 300

Query: 301 CSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVEIAMGDSESDLKEYSF 360
           CSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVEIAMGDSESDLKEYSF
Sbjct: 301 CSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVEIAMGDSESDLKEYSF 360

[Close]

BLAST of Csor.00g036140 vs. NCBI nr
Match: XP_023535044.1 (ribosome maturation protein SBDS [Cucurbita pepo subsp. pepo])

HSP 1 Score: 713 bits (1841), Expect = 3.53e-259
Identity = 356/360 (98.89%), Postives = 359/360 (99.72%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV 180
           TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV 180

Query: 181 PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSF 240
           PEQNFPSLLDKLN+WSASIISND SGNQQRS+ICELDPSFYRDCNPLMSELQGKFEVLSF
Sbjct: 181 PEQNFPSLLDKLNAWSASIISNDPSGNQQRSIICELDPSFYRDCNPLMSELQGKFEVLSF 240

Query: 241 CLHEEGDTNVDQYDDDDFENVELPPRHVKKSESAIPQLSEALQKQAISVDGGNTVKEGKR 300
           CLHEEGDTNVDQYDDDDFENVELPPRHVK+SESAIPQLSEALQKQAISVDGGNTVKEGKR
Sbjct: 241 CLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTVKEGKR 300

Query: 301 CSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVEIAMGDSESDLKEYSF 360
           CSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVEIAMGDSESDLKEYSF
Sbjct: 301 CSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVEIAMGDSESDLKEYSF 360

[Close]

BLAST of Csor.00g036140 vs. NCBI nr
Match: XP_022975304.1 (ribosome maturation protein SBDS [Cucurbita maxima])

HSP 1 Score: 713 bits (1840), Expect = 5.01e-259
Identity = 356/360 (98.89%), Postives = 359/360 (99.72%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV 180
           TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV 180

Query: 181 PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSF 240
           PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSF
Sbjct: 181 PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSF 240

Query: 241 CLHEEGDTNVDQYDDDDFENVELPPRHVKKSESAIPQLSEALQKQAISVDGGNTVKEGKR 300
           CLHEEGDTNVDQYDDDDFENVELPPRHVK+SESAIPQLSEALQKQAISVDGGNT KEGKR
Sbjct: 241 CLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKR 300

Query: 301 CSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVEIAMGDSESDLKEYSF 360
           CSTCNVVVGDAIQFREHHKSEWHKHN+KRKTKNLPPLTEEECMVEIA+GDSESDLKEYSF
Sbjct: 301 CSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF 360

[Close]

BLAST of Csor.00g036140 vs. NCBI nr
Match: XP_038886377.1 (ribosome maturation protein SBDS [Benincasa hispida])

HSP 1 Score: 679 bits (1753), Expect = 8.80e-246
Identity = 339/360 (94.17%), Postives = 350/360 (97.22%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTKDLKAAFDTDDQ EICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV 180
           TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRY V
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYIV 180

Query: 181 PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSF 240
           PEQNFPSLLDKLN+WSASIISNDQSGNQQRS+ICELDPSFYRDCNPLMSELQG+FEVLSF
Sbjct: 181 PEQNFPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSF 240

Query: 241 CLHEEGDTNVDQYDDDDFENVELPPRHVKKSESAIPQLSEALQKQAISVDGGNTVKEGKR 300
           CLHEEGDTNVDQYDDD +ENVELPPR VK+SESAIPQL+EALQKQ ISV+  N +KEGKR
Sbjct: 241 CLHEEGDTNVDQYDDD-YENVELPPRQVKESESAIPQLNEALQKQTISVNSENAMKEGKR 300

Query: 301 CSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVEIAMGDSESDLKEYSF 360
           CSTCNVVVGDA QFREHHKSEWHKHNVKRKTKNLPPLTEEEC VE+AMGD+ESDLKEYSF
Sbjct: 301 CSTCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDTESDLKEYSF 359

[Close]

BLAST of Csor.00g036140 vs. ExPASy TrEMBL
Match: A0A6J1F6G6 (ribosome maturation protein SBDS OS=Cucurbita moschata OX=3662 GN=LOC111442780 PE=3 SV=1)

HSP 1 Score: 717 bits (1851), Expect = 5.11e-261
Identity = 359/360 (99.72%), Postives = 360/360 (100.00%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV 180
           TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV 180

Query: 181 PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSF 240
           PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSF
Sbjct: 181 PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSF 240

Query: 241 CLHEEGDTNVDQYDDDDFENVELPPRHVKKSESAIPQLSEALQKQAISVDGGNTVKEGKR 300
           CLHEEGDTNVDQYDDDDFENVELPPRHVK+SESAIPQLSEALQKQAISVDGGNTVKEGKR
Sbjct: 241 CLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTVKEGKR 300

Query: 301 CSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVEIAMGDSESDLKEYSF 360
           CSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVEIAMGDSESDLKEYSF
Sbjct: 301 CSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVEIAMGDSESDLKEYSF 360

[Close]

BLAST of Csor.00g036140 vs. ExPASy TrEMBL
Match: A0A6J1IK36 (ribosome maturation protein SBDS OS=Cucurbita maxima OX=3661 GN=LOC111474460 PE=3 SV=1)

HSP 1 Score: 713 bits (1840), Expect = 2.43e-259
Identity = 356/360 (98.89%), Postives = 359/360 (99.72%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV 180
           TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV 180

Query: 181 PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSF 240
           PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSF
Sbjct: 181 PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSF 240

Query: 241 CLHEEGDTNVDQYDDDDFENVELPPRHVKKSESAIPQLSEALQKQAISVDGGNTVKEGKR 300
           CLHEEGDTNVDQYDDDDFENVELPPRHVK+SESAIPQLSEALQKQAISVDGGNT KEGKR
Sbjct: 241 CLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKR 300

Query: 301 CSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVEIAMGDSESDLKEYSF 360
           CSTCNVVVGDAIQFREHHKSEWHKHN+KRKTKNLPPLTEEECMVEIA+GDSESDLKEYSF
Sbjct: 301 CSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF 360

[Close]

BLAST of Csor.00g036140 vs. ExPASy TrEMBL
Match: A0A5A7UXA4 (Ribosome maturation protein SBDS OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00400 PE=3 SV=1)

HSP 1 Score: 659 bits (1700), Expect = 5.09e-238
Identity = 327/360 (90.83%), Postives = 344/360 (95.56%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTKDLKAAF TDDQ EICLKILKEGELQ+AGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV 180
           TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMR+RY V
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIV 180

Query: 181 PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSF 240
           PEQN PSLLDKLN+WSASI+SNDQSGNQQRS+ICELDPSFYRDCNPLMSEL G+FEVLSF
Sbjct: 181 PEQNVPSLLDKLNAWSASIVSNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSF 240

Query: 241 CLHEEGDTNVDQYDDDDFENVELPPRHVKKSESAIPQLSEALQKQAISVDGGNTVKEGKR 300
           CLHEEGDTNVDQY+DD +ENVEL PR +K++ES+IPQLSEALQKQ ISV+  N  KEGKR
Sbjct: 241 CLHEEGDTNVDQYEDD-YENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKR 300

Query: 301 CSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVEIAMGDSESDLKEYSF 360
           CSTCNV VGDA +FREHHKS+WHKHNVKRKTKNLPPLTEEEC VE+AMGDSESDLKEYSF
Sbjct: 301 CSTCNVAVGDATKFREHHKSDWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF 359

[Close]

BLAST of Csor.00g036140 vs. ExPASy TrEMBL
Match: A0A1S3CRW0 (ribosome maturation protein SBDS OS=Cucumis melo OX=3656 GN=LOC103504043 PE=3 SV=1)

HSP 1 Score: 659 bits (1700), Expect = 5.09e-238
Identity = 327/360 (90.83%), Postives = 344/360 (95.56%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTKDLKAAF TDDQ EICLKILKEGELQ+AGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV 180
           TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMR+RY V
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIV 180

Query: 181 PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSF 240
           PEQN PSLLDKLN+WSASI+SNDQSGNQQRS+ICELDPSFYRDCNPLMSEL G+FEVLSF
Sbjct: 181 PEQNVPSLLDKLNAWSASIVSNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSF 240

Query: 241 CLHEEGDTNVDQYDDDDFENVELPPRHVKKSESAIPQLSEALQKQAISVDGGNTVKEGKR 300
           CLHEEGDTNVDQY+DD +ENVEL PR +K++ES+IPQLSEALQKQ ISV+  N  KEGKR
Sbjct: 241 CLHEEGDTNVDQYEDD-YENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKR 300

Query: 301 CSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVEIAMGDSESDLKEYSF 360
           CSTCNV VGDA +FREHHKS+WHKHNVKRKTKNLPPLTEEEC VE+AMGDSESDLKEYSF
Sbjct: 301 CSTCNVAVGDATKFREHHKSDWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF 359

[Close]

BLAST of Csor.00g036140 vs. ExPASy TrEMBL
Match: A0A6J1DHK8 (ribosome maturation protein SBDS OS=Momordica charantia OX=3673 GN=LOC111021162 PE=3 SV=1)

HSP 1 Score: 656 bits (1693), Expect = 5.51e-237
Identity = 330/360 (91.67%), Postives = 343/360 (95.28%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTKDLKAAFDTDDQ  ICLKILKEGELQIA KEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV 180
           TFNPETKRPYTISMIERLMREIHFA+DPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV 180

Query: 181 PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSF 240
           PEQNFPSLL+KLN+W+AS +SNDQSG+QQRSVICELDPSFYRDCNPLMSELQG+FEVLSF
Sbjct: 181 PEQNFPSLLEKLNAWNASNLSNDQSGSQQRSVICELDPSFYRDCNPLMSELQGRFEVLSF 240

Query: 241 CLHEEGDTNVDQYDDDDFENVELPPRHVKKSESAIPQLSEALQKQAISVDGGNTVKEGKR 300
           CLHEEGDTNVDQYDDD F+N ELPPR VK  ES IPQLSEALQ+Q ISV+G N  KEGKR
Sbjct: 241 CLHEEGDTNVDQYDDD-FDNGELPPRQVK--ESLIPQLSEALQRQTISVEGENAPKEGKR 300

Query: 301 CSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVEIAMGDSESDLKEYSF 360
           CSTCNV VGDA QFREHHK EWHKHNVKRKTKNLPPLTEEECMVE+AMG+SESDLK+YSF
Sbjct: 301 CSTCNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTEEECMVELAMGNSESDLKDYSF 357

[Close]

BLAST of Csor.00g036140 vs. TAIR 10
Match: AT1G43860.1 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 464.5 bits (1194), Expect = 7.5e-131
Identity = 232/371 (62.53%), Postives = 289/371 (77.90%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MS++LVQP+GQKRLTNVAVVRLK+ G RFEIACYKNKVLSWRSGVEKD+DEVLQS  VYS
Sbjct: 1   MSKTLVQPVGQKRLTNVAVVRLKKQGNRFEIACYKNKVLSWRSGVEKDIDEVLQSHTVYS 60

Query: 61  NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAK+KDL  +F +DD  +IC+ IL++GELQ+AGKERE+Q S+QFRDIATIVMQK
Sbjct: 61  NVSKGVLAKSKDLMKSFGSDDHTKICIDILEKGELQVAGKERESQFSSQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV 180
           T NPET+RPYTISM+ERLM EIHFAVDP+ +SKKQAL+VI ELQK FPIKRSPMR+R TV
Sbjct: 121 TINPETQRPYTISMVERLMHEIHFAVDPHSNSKKQALDVIRELQKHFPIKRSPMRLRLTV 180

Query: 181 PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSF 240
           P QNFPSLL+KL  W  S++S D+SG Q  S +CE++P  +R+C+  +  +QG+ E+L+ 
Sbjct: 181 PVQNFPSLLEKLKEWDGSVVSKDESGTQM-STVCEMEPGLFRECDSHVRSIQGRLEILAV 240

Query: 241 CLHEEGDTNVDQYDDDDFENVE-----LPPR-HVKKSESAIPQLSEALQKQAISV----- 300
            +H EGDT++D YD+ D   ++     LP     K     + +LS+ LQKQ IS      
Sbjct: 241 SVHAEGDTSMDHYDEHDDMALQTHKPLLPAETETKDLTDPVVELSKKLQKQEISTTDNIK 300

Query: 301 DGGNTVKEGKRCSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVEIAMG 360
             G   K+G +CSTCN  VG+A Q+REH KS+WHKHN+KRKT+ LPP++ +ECM EI M 
Sbjct: 301 QEGGEEKKGTKCSTCNTFVGEAKQYREHCKSDWHKHNLKRKTRKLPPISADECMSEIDMD 360

[Close]

BLAST of Csor.00g036140 vs. TAIR 10
Match: AT2G24500.1 (Zinc finger protein 622 )

HSP 1 Score: 44.7 bits (104), Expect = 1.9e-04
Identity = 18/42 (42.86%), Postives = 28/42 (66.67%), Query Frame = 0


Query: 298 GKRCSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTE 340
           G  C++CN    D  + + H+KSEWH++N+KRK   +P +TE
Sbjct: 3   GLACNSCNKDFEDDAEQKFHYKSEWHRYNLKRKIAGVPGVTE 44

[Close]

BLAST of Csor.00g036140 vs. TAIR 10
Match: AT4G31420.1 (Zinc finger protein 622 )

HSP 1 Score: 43.9 bits (102), Expect = 3.2e-04
Identity = 17/42 (40.48%), Postives = 27/42 (64.29%), Query Frame = 0


Query: 298 GKRCSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTE 340
           G  C+ CN+   D  +   H+KS+WH++N+KRK   +P +TE
Sbjct: 3   GLTCNACNMEFKDEEERNLHYKSDWHRYNLKRKVAGVPGVTE 44

[Close]

BLAST of Csor.00g036140 vs. TAIR 10
Match: AT4G31420.2 (Zinc finger protein 622 )

HSP 1 Score: 43.9 bits (102), Expect = 3.2e-04
Identity = 17/42 (40.48%), Postives = 27/42 (64.29%), Query Frame = 0


Query: 298 GKRCSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTE 340
           G  C+ CN+   D  +   H+KS+WH++N+KRK   +P +TE
Sbjct: 3   GLTCNACNMEFKDEEERNLHYKSDWHRYNLKRKVAGVPGVTE 44

The following BLAST results are available for this feature:

BLAST of Csor.00g036140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P70122	1.4e-65	53.85	Ribosome maturation protein SBDS OS=Mus musculus OX=10090 GN=Sbds PE=1 SV=4	[more]
Q5RK30	1.4e-65	53.85	Ribosome maturation protein SBDS OS=Rattus norvegicus OX=10116 GN=Sbds PE=2 SV=1	[more]
Q3SWZ6	4.1e-65	53.85	Ribosome maturation protein SBDS OS=Bos taurus OX=9913 GN=SBDS PE=2 SV=1	[more]
Q9Y3A5	7.8e-64	53.04	Ribosome maturation protein SBDS OS=Homo sapiens OX=9606 GN=SBDS PE=1 SV=4	[more]
Q5RAZ2	7.8e-64	53.04	Ribosome maturation protein SBDS OS=Pongo abelii OX=9601 GN=SBDS PE=2 SV=1	[more]

BLAST of Csor.00g036140 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592159.1	2.59e-261	100.00	Ribosome maturation protein SBDS, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_022936066.1	1.06e-260	99.72	ribosome maturation protein SBDS [Cucurbita moschata] >KAG7025021.1 Ribosome mat...	[more]
XP_023535044.1	3.53e-259	98.89	ribosome maturation protein SBDS [Cucurbita pepo subsp. pepo]	[more]
XP_022975304.1	5.01e-259	98.89	ribosome maturation protein SBDS [Cucurbita maxima]	[more]
XP_038886377.1	8.80e-246	94.17	ribosome maturation protein SBDS [Benincasa hispida]	[more]

BLAST of Csor.00g036140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F6G6	5.11e-261	99.72	ribosome maturation protein SBDS OS=Cucurbita moschata OX=3662 GN=LOC111442780 P...	[more]
A0A6J1IK36	2.43e-259	98.89	ribosome maturation protein SBDS OS=Cucurbita maxima OX=3661 GN=LOC111474460 PE=...	[more]
A0A5A7UXA4	5.09e-238	90.83	Ribosome maturation protein SBDS OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CRW0	5.09e-238	90.83	ribosome maturation protein SBDS OS=Cucumis melo OX=3656 GN=LOC103504043 PE=3 SV...	[more]
A0A6J1DHK8	5.51e-237	91.67	ribosome maturation protein SBDS OS=Momordica charantia OX=3673 GN=LOC111021162 ...	[more]

BLAST of Csor.00g036140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G43860.1	7.5e-131	62.53	sequence-specific DNA binding transcription factors	[more]
AT2G24500.1	1.9e-04	42.86	Zinc finger protein 622	[more]
AT4G31420.1	3.2e-04	40.48	Zinc finger protein 622	[more]
AT4G31420.2	3.2e-04	40.48	Zinc finger protein 622	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003604	Matrin/U1-C-like, C2H2-type zinc finger	SMART	SM00451	ZnF_U1_5	coord: 296..330 e-value: 6.7E-4 score: 29.0
IPR002140	Ribosome maturation protein Sdo1/SBDS	TIGRFAM	TIGR00291	TIGR00291	coord: 13..231 e-value: 6.7E-51 score: 170.9
IPR036786	Ribosome maturation protein SBDS, N-terminal domain superfamily	GENE3D	3.30.1250.10		coord: 1..96 e-value: 3.3E-38 score: 131.6
IPR036786	Ribosome maturation protein SBDS, N-terminal domain superfamily	SUPERFAMILY	89895	FYSH domain	coord: 13..96
IPR019783	Ribosome maturation protein Sdo1/SBDS, N-terminal	PFAM	PF01172	SBDS	coord: 16..102 e-value: 1.2E-27 score: 95.7
IPR037188	Ribosome maturation protein Sdo1/SBDS, central domain superfamily	GENE3D	1.10.10.900		coord: 100..172 e-value: 7.0E-30 score: 104.8
IPR037188	Ribosome maturation protein Sdo1/SBDS, central domain superfamily	SUPERFAMILY	109728	Hypothetical protein AF0491, middle domain	coord: 98..171
IPR018978	Ribosome maturation protein Sdo1/SBDS, C-terminal	PFAM	PF09377	SBDS_C	coord: 110..225 e-value: 2.4E-28 score: 98.4
None	No IPR available	GENE3D	3.30.70.240		coord: 174..251 e-value: 1.7E-11 score: 45.9
None	No IPR available	PANTHER	PTHR10927:SF3	BNAANNG06530D PROTEIN	coord: 1..360
IPR039100	Ribosome maturation protein Sdo1/SBDS-like	PANTHER	PTHR10927	RIBOSOME MATURATION PROTEIN SBDS	coord: 1..360
IPR018023	Ribosome maturation protein SBDS, conserved site	PROSITE	PS01267	UPF0023	coord: 46..65
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 292..330

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g036140.m01	Csor.00g036140.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042256	mature ribosome assembly
biological_process	GO:0042254	ribosome biogenesis
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding