Csor.00g035990 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g035990
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionPsbP domain-containing protein
LocationCsor_Chr09: 6043878 .. 6047345 (+)
RNA-Seq ExpressionCsor.00g035990
SyntenyCsor.00g035990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATCGACTATGTTCGCCACTGTTCCATTCTCCTGCAACTTTCACCAATCAAAGCCTCCTTCCCACATTCTCCAAAAGGGGGTTCCGGCCGTCGGTGGCGAAAAGGAGAATCGGTCTCCCATTTTGAATCGGAGATCGGTTTTGCTATCCGGTGTTTCTTTGGTTTCTTCTGCGGGTTTGGGGCTGCAGAGCGAGTGTTTGGCTGCGGTTAAGCAAGGTCTTCTTGCTGGGAGGATTCCTGGGTTGTCTGAACCAGATGAACAGGGTTGGCTTTTCTTAACCACTTGAATTCTGTATCTAAGTAATCCTTACTGTCGTTTTGTTTCTTGTTTACATCTATGATTTGTTTCTTTGTTTCAATTGGTGGAATCTTCTGGTTGCTGCAGATTGTGGATTGTGAAATACCTTTGTTCGTGCTATGTATATGAATTTTAATATCTAACCTTATTTTAGTTCATGTAGTTTAAAATTTGTAATGGTTCATGTAGAATTTTTTGCATGTGTTGATGGATTAATCTGTAGGGAACAAATATGTTTTTAAACTAGAGAATAGATATTGAAAATGATGCATGATTTTCTATATTGTTTTTGGTGATGTAGTTAGTTAATTCCATCCTGTTAGTTTCTGGAGTTTCTATTGTTTTTGTGAGATCCTACATCGATTAGAGAAGGGAACGACATTGATGGGAGAGGGGAATGAGTGCCAGTGAGGACCTTGGACCCCTAAGAGGAGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCATACACATTTTGACAACCTTGAGGTGAAGTTCGAAAGGGGAAAGCCGAAAGAGGACAATATTTGCTAGCGGTGGGCTTGAGCTGTTACAAAATGGTATCAGAGCCAGACACTGCAGGGAGTGGATTGTGAGATCCTACATCGGTTGGGGAGGAGAACGAAACATTCTTCATAAGGGTGTGGAAACCTCTCTCTAGCATACACATTTTGAAAACTTTGAGGGGAATTACGAAAGGGGAAAGCCTAAAGAGGACAATATCTACTAGCGATAGGCTTGAACTGTTATAAAATGGTATAAGAGCCAGACACCGGGTGGTGTGTCAGCGAGGACGTTGGGCCTCAAAGGAGGGTGGATTGTGAGATCCCACATCGATTAGAGAAGGGAACAACTGGAGAGGGAAATGAGTGCCAGTGATGACGCTAACCCCAAAGGGGTGTGGATTGTGAGATCTGCTGCCATCGGTGGGCTTGGGTTGCTAGTGGTGAGATCCACTGCATTAAAAGAAGCAAACAGCGCTGATCATGCCATGTTTTCTATATCAAGTTTACATAGCATCTGGTGTGCTTGTGCAGGAATCTCTTGTATTAATCAGAATATATGCAGCAAATTTCATTCTTGACCATTGAAAGCTTTTAAACTCAAGCTTAGCATATCTGGTTTCTTGTTTGTTGCCTGCTCAGACAGGTTGGAGGACATATCGTAGACCCGACGAGAAGTCCGGTGGGCATGGAGTTGGATGGAGTCCTATTATTCCTTATGCCTTTTCAGTTCCACAAGACTGGGAAGAGGTAACTGCTGTTAGATGTTTTTTTCCCTTTTAACCTTATTAAAGATGCTGTTAAGAAGTACAAAAGGAACAAATGGCTTCTACTTCAATCAGTTTCTTCATTAGATCAGAGAAACTAACGAAACTTGATCAACCACTTTAGCTAACAAGATATTGACATGGGTTGTTAGTTCCTTCATGAGTTTGTGGACAGTTAAATGTTTCTGGGTTAGTGGCTCTGAGATCCCACGTCGGTTGGAAAGAGGAACGAAGCATTCCTTATAAGGGAATGGAAACTTCTCCTTAGTAAACGTGTTTCAAAACTGTGAGACTGACGGCGATACGTAACATGTTGAAGTGGACAATATCTACTAGCAGTGGGCTTGGGCTTGGACTATTACAAATGGTATCAGAGTTAGAAACTGAGCAGTGTGCCAGCGAGGATACTAAGCTTCCAAAGGGAGTGGATTGTGAGATCTCACATCGGTTGGAGAGGGGAACGAAGCATTCCTTATAAGGGTGTGGAAACCTCTCTCTAGTAGACGTGTTTTAGAACCGTGAGACTGACGGCGATACGTAACGGGTTGAAGTGGATAATATCTACTAGCGGTGGGCTTGGACTATTACAAATGGTATCAAAGGCAGACACCAGGCAGTGTGCCAGCGAGGATGCTGGGTTCCCAAAAGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGATGAACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCTCTAGTAAATGCATTTTAAAATCGTGAGGCTGACGGCGATACGTAACGGGCTGAAGCGGACAATATCTACTAACGGTGGGCTTGGACTGTTACAAATGGTATCAAAGCTAGACACCTGACAGTGTGCCAACGAGGACTCTGGGCTCCCAAAGGAGGTGGTGGATTGTGAGATCCCATATCGGTTGGAGAGGGGAACGAAGCATTCCTTATAAGGTGCATTCCTTATAAGGTTGTAGAAACCTCTCTCTAGTAGACCCGTTTTAAAACCATGAGACTGACGGCGATACGTAACGGGCTAAAGGGAACAATATCTATTAGCGATGGGTTTGGATTGTTCCCGTGGTCTTTTGGTATTTGCATTGGGGTGCATCAGGTTTCCTGTTGATTAGAGGAGTAAGCACAATGTATCATGTCTGCCAGCATCCAATGATATCTATTCCCAATTTATTTCTTTTCTAGGAATTGAAAAGTCTCGTCCTAGTTAGCTATGTCAAAGCAGACATGACACAATGTGCTTTTGAGTTGCAGGTTCCTGTGTCAATTGCCGATCTTGGAGGGACAGAGATTGATCTCAGATTCAAAAGCTCAAAGGAAGGTCGTCTGTTCGTCATCGTTGCGCCCGTTCAACGATTTTCCGATGGTGCATTTCCCCGAAACTTTATACTTGTTCAACTTTCCATTTTAAATAAACTATACTGCTAAATGATGCATTCATTGTCATAATCCTGTGAAGTTATCGGCGACGATGCAACGATTGAAATGGTTGGTCCTCCAGAGAAAGTAATCAGTGCGTTCGGACCAGAAGTGATCGGAGAAAACGTAGAAGGGAAGGTGATGAACATGAGCGTGGCAGAGCATAATGGAAGAACATATTATCAGTTTGAATTGGAGCCTCCTCATGTTTTGATCACAGCAACAGCGGCAGGAAACCGTCTGTATCTATTCAGTGTAACAGGAAATGGTAAGACACTACCAAGAACGCTGTAGATATGATATGATATGATATCAATTGTTTTCCATTAGAACTGAAGGAAGCTTGTTTTTGTTTCTCTGGGTGTTCTTATAGGGCTTCAATGGAAGAGACATTTCAGCGACCTGAAGCGGATAGCGGATTCCTTTCGTGTCGTGTGA

mRNA sequence

ATGGGATCGACTATGTTCGCCACTGTTCCATTCTCCTGCAACTTTCACCAATCAAAGCCTCCTTCCCACATTCTCCAAAAGGGGGTTCCGGCCGTCGGTGGCGAAAAGGAGAATCGGTCTCCCATTTTGAATCGGAGATCGGTTTTGCTATCCGGTGTTTCTTTGGTTTCTTCTGCGGGTTTGGGGCTGCAGAGCGAGTGTTTGGCTGCGGTTAAGCAAGGTCTTCTTGCTGGGAGGATTCCTGGGTTGTCTGAACCAGATGAACAGGGTTGGAGGACATATCGTAGACCCGACGAGAAGTCCGGTGGGCATGGAGTTGGATGGAGTCCTATTATTCCTTATGCCTTTTCAGTTCCACAAGACTGGGAAGAGGTTCCTGTGTCAATTGCCGATCTTGGAGGGACAGAGATTGATCTCAGATTCAAAAGCTCAAAGGAAGGTCGTCTGTTCGTCATCGTTGCGCCCGTTCAACGATTTTCCGATGTTATCGGCGACGATGCAACGATTGAAATGGTTGGTCCTCCAGAGAAAGTAATCAGTGCGTTCGGACCAGAAGTGATCGGAGAAAACGTAGAAGGGAAGGTGATGAACATGAGCGTGGCAGAGCATAATGGAAGAACATATTATCAGTTTGAATTGGAGCCTCCTCATGTTTTGATCACAGCAACAGCGGCAGGAAACCGTCTGTATCTATTCAGTGTAACAGGAAATGGGCTTCAATGGAAGAGACATTTCAGCGACCTGAAGCGGATAGCGGATTCCTTTCGTGTCGTGTGA

Coding sequence (CDS)

ATGGGATCGACTATGTTCGCCACTGTTCCATTCTCCTGCAACTTTCACCAATCAAAGCCTCCTTCCCACATTCTCCAAAAGGGGGTTCCGGCCGTCGGTGGCGAAAAGGAGAATCGGTCTCCCATTTTGAATCGGAGATCGGTTTTGCTATCCGGTGTTTCTTTGGTTTCTTCTGCGGGTTTGGGGCTGCAGAGCGAGTGTTTGGCTGCGGTTAAGCAAGGTCTTCTTGCTGGGAGGATTCCTGGGTTGTCTGAACCAGATGAACAGGGTTGGAGGACATATCGTAGACCCGACGAGAAGTCCGGTGGGCATGGAGTTGGATGGAGTCCTATTATTCCTTATGCCTTTTCAGTTCCACAAGACTGGGAAGAGGTTCCTGTGTCAATTGCCGATCTTGGAGGGACAGAGATTGATCTCAGATTCAAAAGCTCAAAGGAAGGTCGTCTGTTCGTCATCGTTGCGCCCGTTCAACGATTTTCCGATGTTATCGGCGACGATGCAACGATTGAAATGGTTGGTCCTCCAGAGAAAGTAATCAGTGCGTTCGGACCAGAAGTGATCGGAGAAAACGTAGAAGGGAAGGTGATGAACATGAGCGTGGCAGAGCATAATGGAAGAACATATTATCAGTTTGAATTGGAGCCTCCTCATGTTTTGATCACAGCAACAGCGGCAGGAAACCGTCTGTATCTATTCAGTGTAACAGGAAATGGGCTTCAATGGAAGAGACATTTCAGCGACCTGAAGCGGATAGCGGATTCCTTTCGTGTCGTGTGA

Protein sequence

MGSTMFATVPFSCNFHQSKPPSHILQKGVPAVGGEKENRSPILNRRSVLLSGVSLVSSAGLGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVISAFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHFSDLKRIADSFRVV
Homology
BLAST of Csor.00g035990 vs. ExPASy Swiss-Prot
Match: O49292 (PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD4 PE=1 SV=2)

HSP 1 Score: 359.0 bits (920), Expect = 4.5e-98
Identity = 176/226 (77.88%), Postives = 195/226 (86.28%), Query Frame = 0

Query: 33  GGEKENRSPILNRRSVLLSGVSLVSSAGLGLQSECLAAVKQGLLAGRIPGLSEPDEQGWR 92
           G E E  + +L+RRSV+ SG+ + S+  L    E LA VKQGLLAGR+PGLSEPDE+GWR
Sbjct: 36  GCEDEWCARVLSRRSVMASGL-VSSTTALAFPREGLAVVKQGLLAGRVPGLSEPDEEGWR 95

Query: 93  TYRRPDEKSGGHGVGWSPIIPYAFSVPQDWEEVPVSIADLGGTEIDLRFKSSKEGRLFVI 152
           TYRRPDEKSGGHGVGWSPIIPYAFSVPQDW EVPVSIADLGGTEIDLRF S KEGRL VI
Sbjct: 96  TYRRPDEKSGGHGVGWSPIIPYAFSVPQDWNEVPVSIADLGGTEIDLRFASPKEGRLSVI 155

Query: 153 VAPVQRFSDVIGDDATIEMVGPPEKVISAFGPEVIGENVEGKVMNMSVAEHNGRTYYQFE 212
           VAPV RF+D +GDD  IE +G P KVI+AFGPEVIGENVEGKV++ +VAEH+GR YYQFE
Sbjct: 156 VAPVLRFADNLGDDVKIENIGQPAKVINAFGPEVIGENVEGKVLSSNVAEHDGRLYYQFE 215

Query: 213 LEPPHVLITATAAGNRLYLFSVTGNGLQWKRHFSDLKRIADSFRVV 259
           LEPPHVLITATAAGNRLYLFSVTGNGLQWKRH+ DLKRIA SFR+V
Sbjct: 216 LEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYKDLKRIASSFRIV 260

BLAST of Csor.00g035990 vs. ExPASy Swiss-Prot
Match: Q9LXX5 (PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD6 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.5e-16
Identity = 70/265 (26.42%), Postives = 131/265 (49.43%), Query Frame = 0

Query: 9   VPFSCNFHQS-KPPSHILQKGVPAVGGEKENRSPILNRRSVLLSGVSLVSSAGLGLQSEC 68
           VP S  F  S K  + I  +    V   ++ + P   RR  LL   ++   A L L+   
Sbjct: 7   VPTSKIFSVSPKSSASIKARSRVVVASSQQQQQP---RRRELLLKSAVAIPAILQLKEAP 66

Query: 69  LAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWEEVPV 128
           ++A ++  +   +P    P +  +  ++     +     G   + PY F +P +W+++ +
Sbjct: 67  ISAAREVEVGSYLP--LSPSDPSFVLFKAKPSDTPALRAG--NVQPYQFVLPPNWKQLRI 126

Query: 129 SIADLGG--------TEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVI 188
           +    G           I+++F++ K+G++ V+ +P+ R ++    +ATIE +G PEKVI
Sbjct: 127 ANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTN--KPNATIEDLGEPEKVI 186

Query: 189 SAFGPEVIGENVEG-KVMNMSVAEHNGRTYYQFELEPP------HVLITATAAGNRLYLF 248
           ++ GP V G + +  +++  S+ +   +TYY++ LE P      H L  ATA G+ + LF
Sbjct: 187 ASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSHNLAKATAKGSTVVLF 246

Query: 249 SVTGNGLQWKRHFSDLKRIADSFRV 258
            V+    QW+     L+ I DSF++
Sbjct: 247 VVSATEKQWQSSQKTLEAILDSFQL 262

BLAST of Csor.00g035990 vs. NCBI nr
Match: KAG6592174.1 (PsbP domain-containing protein 4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 523 bits (1348), Expect = 1.82e-187
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0

Query: 1   MGSTMFATVPFSCNFHQSKPPSHILQKGVPAVGGEKENRSPILNRRSVLLSGVSLVSSAG 60
           MGSTMFATVPFSCNFHQSKPPSHILQKGVPAVGGEKENRSPILNRRSVLLSGVSLVSSAG
Sbjct: 1   MGSTMFATVPFSCNFHQSKPPSHILQKGVPAVGGEKENRSPILNRRSVLLSGVSLVSSAG 60

Query: 61  LGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQ 120
           LGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQ
Sbjct: 61  LGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQ 120

Query: 121 DWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVIS 180
           DWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVIS
Sbjct: 121 DWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVIS 180

Query: 181 AFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQ 240
           AFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQ
Sbjct: 181 AFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQ 240

Query: 241 WKRHFSDLKRIADSFRVV 258
           WKRHFSDLKRIADSFRVV
Sbjct: 241 WKRHFSDLKRIADSFRVV 258

BLAST of Csor.00g035990 vs. NCBI nr
Match: XP_022936523.1 (psbP domain-containing protein 4, chloroplastic [Cucurbita moschata] >KAG7025035.1 PsbP domain-containing protein 4, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 521 bits (1341), Expect = 2.12e-186
Identity = 256/258 (99.22%), Postives = 258/258 (100.00%), Query Frame = 0

Query: 1   MGSTMFATVPFSCNFHQSKPPSHILQKGVPAVGGEKENRSPILNRRSVLLSGVSLVSSAG 60
           MGSTMFA+VPFSCNFHQSKPPSHILQKGVPAVGGEK+NRSPILNRRSVLLSGVSLVSSAG
Sbjct: 1   MGSTMFASVPFSCNFHQSKPPSHILQKGVPAVGGEKDNRSPILNRRSVLLSGVSLVSSAG 60

Query: 61  LGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQ 120
           LGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQ
Sbjct: 61  LGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQ 120

Query: 121 DWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVIS 180
           DWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVIS
Sbjct: 121 DWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVIS 180

Query: 181 AFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQ 240
           AFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQ
Sbjct: 181 AFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQ 240

Query: 241 WKRHFSDLKRIADSFRVV 258
           WKRHFSDLKRIADSFRVV
Sbjct: 241 WKRHFSDLKRIADSFRVV 258

BLAST of Csor.00g035990 vs. NCBI nr
Match: XP_022975015.1 (psbP domain-containing protein 4, chloroplastic [Cucurbita maxima])

HSP 1 Score: 519 bits (1337), Expect = 8.64e-186
Identity = 256/258 (99.22%), Postives = 257/258 (99.61%), Query Frame = 0

Query: 1   MGSTMFATVPFSCNFHQSKPPSHILQKGVPAVGGEKENRSPILNRRSVLLSGVSLVSSAG 60
           MGSTMFATVPFSCNFHQSKPPS ILQKGVPAVGGEKENRSPILNRRSVLLSGVSLVSSAG
Sbjct: 1   MGSTMFATVPFSCNFHQSKPPSQILQKGVPAVGGEKENRSPILNRRSVLLSGVSLVSSAG 60

Query: 61  LGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQ 120
           LGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQ
Sbjct: 61  LGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQ 120

Query: 121 DWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVIS 180
           DWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVIS
Sbjct: 121 DWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVIS 180

Query: 181 AFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQ 240
           AFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQ
Sbjct: 181 AFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQ 240

Query: 241 WKRHFSDLKRIADSFRVV 258
           WKRH+SDLKRIADSFRVV
Sbjct: 241 WKRHYSDLKRIADSFRVV 258

BLAST of Csor.00g035990 vs. NCBI nr
Match: XP_023534875.1 (psbP domain-containing protein 4, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 518 bits (1334), Expect = 2.48e-185
Identity = 254/258 (98.45%), Postives = 257/258 (99.61%), Query Frame = 0

Query: 1   MGSTMFATVPFSCNFHQSKPPSHILQKGVPAVGGEKENRSPILNRRSVLLSGVSLVSSAG 60
           MGSTMFA+VPFSCNFHQSKPPSHILQKGVP VGGEKENRSPI+NRRSVLLSGVSLVSSAG
Sbjct: 1   MGSTMFASVPFSCNFHQSKPPSHILQKGVPGVGGEKENRSPIVNRRSVLLSGVSLVSSAG 60

Query: 61  LGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQ 120
           LGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQ
Sbjct: 61  LGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQ 120

Query: 121 DWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVIS 180
           DWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVIS
Sbjct: 121 DWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVIS 180

Query: 181 AFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQ 240
           AFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQ
Sbjct: 181 AFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQ 240

Query: 241 WKRHFSDLKRIADSFRVV 258
           WKRH+SDLKRIADSFRVV
Sbjct: 241 WKRHYSDLKRIADSFRVV 258

BLAST of Csor.00g035990 vs. NCBI nr
Match: XP_022154428.1 (psbP domain-containing protein 4, chloroplastic [Momordica charantia])

HSP 1 Score: 431 bits (1107), Expect = 1.02e-150
Identity = 211/259 (81.47%), Postives = 230/259 (88.80%), Query Frame = 0

Query: 1   MGSTMFATVPFSCNFHQSKPPSHILQ-KGVPAVGGEKENRSPILNRRSVLLSGVSLVSSA 60
           MG+++F +  FSCNFH  K PS IL  + +    GE +     LNRRS+L SG+SL+S+A
Sbjct: 1   MGTSLFTSYRFSCNFHHPKLPSPILHPQSISVADGENQRPLGDLNRRSILASGISLLSTA 60

Query: 61  GLGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVP 120
            LGL   CLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY FSVP
Sbjct: 61  PLGLHDHCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYVFSVP 120

Query: 121 QDWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVI 180
           QDWEEVPVSIADLGGTEIDLRF SSKEGRLFVIVAPV+RFSDVIG+DATIEMVGPPEKVI
Sbjct: 121 QDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGPPEKVI 180

Query: 181 SAFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGL 240
           +AFGPEVIGENVEGKV+NM+VAEH+GRTYYQFELEPPHVLITATAAGNRLYLF+VT NGL
Sbjct: 181 NAFGPEVIGENVEGKVINMNVAEHSGRTYYQFELEPPHVLITATAAGNRLYLFNVTANGL 240

Query: 241 QWKRHFSDLKRIADSFRVV 258
           QWKRH+ DLKRIADSFRVV
Sbjct: 241 QWKRHYGDLKRIADSFRVV 259

BLAST of Csor.00g035990 vs. ExPASy TrEMBL
Match: A0A6J1FDH1 (psbP domain-containing protein 4, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111443110 PE=4 SV=1)

HSP 1 Score: 521 bits (1341), Expect = 1.03e-186
Identity = 256/258 (99.22%), Postives = 258/258 (100.00%), Query Frame = 0

Query: 1   MGSTMFATVPFSCNFHQSKPPSHILQKGVPAVGGEKENRSPILNRRSVLLSGVSLVSSAG 60
           MGSTMFA+VPFSCNFHQSKPPSHILQKGVPAVGGEK+NRSPILNRRSVLLSGVSLVSSAG
Sbjct: 1   MGSTMFASVPFSCNFHQSKPPSHILQKGVPAVGGEKDNRSPILNRRSVLLSGVSLVSSAG 60

Query: 61  LGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQ 120
           LGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQ
Sbjct: 61  LGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQ 120

Query: 121 DWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVIS 180
           DWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVIS
Sbjct: 121 DWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVIS 180

Query: 181 AFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQ 240
           AFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQ
Sbjct: 181 AFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQ 240

Query: 241 WKRHFSDLKRIADSFRVV 258
           WKRHFSDLKRIADSFRVV
Sbjct: 241 WKRHFSDLKRIADSFRVV 258

BLAST of Csor.00g035990 vs. ExPASy TrEMBL
Match: A0A6J1IFH3 (psbP domain-containing protein 4, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111473925 PE=4 SV=1)

HSP 1 Score: 519 bits (1337), Expect = 4.18e-186
Identity = 256/258 (99.22%), Postives = 257/258 (99.61%), Query Frame = 0

Query: 1   MGSTMFATVPFSCNFHQSKPPSHILQKGVPAVGGEKENRSPILNRRSVLLSGVSLVSSAG 60
           MGSTMFATVPFSCNFHQSKPPS ILQKGVPAVGGEKENRSPILNRRSVLLSGVSLVSSAG
Sbjct: 1   MGSTMFATVPFSCNFHQSKPPSQILQKGVPAVGGEKENRSPILNRRSVLLSGVSLVSSAG 60

Query: 61  LGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQ 120
           LGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQ
Sbjct: 61  LGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQ 120

Query: 121 DWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVIS 180
           DWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVIS
Sbjct: 121 DWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVIS 180

Query: 181 AFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQ 240
           AFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQ
Sbjct: 181 AFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQ 240

Query: 241 WKRHFSDLKRIADSFRVV 258
           WKRH+SDLKRIADSFRVV
Sbjct: 241 WKRHYSDLKRIADSFRVV 258

BLAST of Csor.00g035990 vs. ExPASy TrEMBL
Match: A0A6J1DKA3 (psbP domain-containing protein 4, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021699 PE=4 SV=1)

HSP 1 Score: 431 bits (1107), Expect = 4.92e-151
Identity = 211/259 (81.47%), Postives = 230/259 (88.80%), Query Frame = 0

Query: 1   MGSTMFATVPFSCNFHQSKPPSHILQ-KGVPAVGGEKENRSPILNRRSVLLSGVSLVSSA 60
           MG+++F +  FSCNFH  K PS IL  + +    GE +     LNRRS+L SG+SL+S+A
Sbjct: 1   MGTSLFTSYRFSCNFHHPKLPSPILHPQSISVADGENQRPLGDLNRRSILASGISLLSTA 60

Query: 61  GLGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVP 120
            LGL   CLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY FSVP
Sbjct: 61  PLGLHDHCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYVFSVP 120

Query: 121 QDWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVI 180
           QDWEEVPVSIADLGGTEIDLRF SSKEGRLFVIVAPV+RFSDVIG+DATIEMVGPPEKVI
Sbjct: 121 QDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGPPEKVI 180

Query: 181 SAFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGL 240
           +AFGPEVIGENVEGKV+NM+VAEH+GRTYYQFELEPPHVLITATAAGNRLYLF+VT NGL
Sbjct: 181 NAFGPEVIGENVEGKVINMNVAEHSGRTYYQFELEPPHVLITATAAGNRLYLFNVTANGL 240

Query: 241 QWKRHFSDLKRIADSFRVV 258
           QWKRH+ DLKRIADSFRVV
Sbjct: 241 QWKRHYGDLKRIADSFRVV 259

BLAST of Csor.00g035990 vs. ExPASy TrEMBL
Match: A0A0A0K501 (PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G322590 PE=4 SV=1)

HSP 1 Score: 428 bits (1100), Expect = 7.64e-150
Identity = 215/268 (80.22%), Postives = 236/268 (88.06%), Query Frame = 0

Query: 1   MGSTMFATVPFSCNFHQSK------PPSHILQKGVPAVGGEKENRSPI----LNRRSVLL 60
           MG+T+F T PFS  FH         PP H L K V AV G   N++PI    LNRR  L+
Sbjct: 1   MGTTLFITNPFSSIFHHQYLPSPHLPPHHFLPKRVSAVHGA-HNQNPISSTALNRRWALV 60

Query: 61  SGVSLVSSAGLGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP 120
           SGVSL+SSA LGLQ++CLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP
Sbjct: 61  SGVSLLSSAALGLQNDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP 120

Query: 121 IIPYAFSVPQDWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIE 180
           IIPYAFSVPQDWEEVPVSIADLGGTEIDLRF S KEGR+FV+VAPV+RFSDVIG+DATIE
Sbjct: 121 IIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRVFVVVAPVRRFSDVIGEDATIE 180

Query: 181 MVGPPEKVISAFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLY 240
           MVGPPEKVI+AFGPEVIGENVEGKV++MSVAEH+GRTYYQFELEPPHV+ITATAAGNRLY
Sbjct: 181 MVGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLY 240

Query: 241 LFSVTGNGLQWKRHFSDLKRIADSFRVV 258
           LF+VT NGLQWKRH++DLKRIADSFR+V
Sbjct: 241 LFNVTANGLQWKRHYNDLKRIADSFRIV 267

BLAST of Csor.00g035990 vs. ExPASy TrEMBL
Match: A0A5A7T2U1 (PsbP domain-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1784G00200 PE=4 SV=1)

HSP 1 Score: 417 bits (1072), Expect = 1.46e-145
Identity = 215/268 (80.22%), Postives = 233/268 (86.94%), Query Frame = 0

Query: 1   MGST-MFATVPFSCNFHQSKPPSHILQ------KGVPAVG---GEKENRSPILNRRSVLL 60
           MG+T +F T PFS  FHQ   PS +L       K V A+     +    SP L RR VL+
Sbjct: 1   MGTTALFITNPFSSIFHQQNLPSPLLHPHRFLPKRVSALHRAHNQNPISSPALIRRWVLV 60

Query: 61  SGVSLVSSAGLGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP 120
           SGVSL+SSA LGLQ+ECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP
Sbjct: 61  SGVSLLSSAALGLQNECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP 120

Query: 121 IIPYAFSVPQDWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIE 180
           IIPYAFSVPQDWEEVPVSIADLGGTEIDLRF S KEGRLFVIVAPV+RFSDVIG+DATIE
Sbjct: 121 IIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIE 180

Query: 181 MVGPPEKVISAFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLY 240
           MVGPPEKVI+AFGPEVIGENVEGKV++MSVAE++GRTYYQFELEPPHV+ITATAAGNRLY
Sbjct: 181 MVGPPEKVINAFGPEVIGENVEGKVISMSVAEYSGRTYYQFELEPPHVIITATAAGNRLY 240

Query: 241 LFSVTGNGLQWKRHFSDLKRIADSFRVV 258
           LF+VT NGLQWKRH+ DLKRIADSFRVV
Sbjct: 241 LFNVTANGLQWKRHYKDLKRIADSFRVV 268

BLAST of Csor.00g035990 vs. TAIR 10
Match: AT1G77090.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )

HSP 1 Score: 359.0 bits (920), Expect = 3.2e-99
Identity = 176/226 (77.88%), Postives = 195/226 (86.28%), Query Frame = 0

Query: 33  GGEKENRSPILNRRSVLLSGVSLVSSAGLGLQSECLAAVKQGLLAGRIPGLSEPDEQGWR 92
           G E E  + +L+RRSV+ SG+ + S+  L    E LA VKQGLLAGR+PGLSEPDE+GWR
Sbjct: 36  GCEDEWCARVLSRRSVMASGL-VSSTTALAFPREGLAVVKQGLLAGRVPGLSEPDEEGWR 95

Query: 93  TYRRPDEKSGGHGVGWSPIIPYAFSVPQDWEEVPVSIADLGGTEIDLRFKSSKEGRLFVI 152
           TYRRPDEKSGGHGVGWSPIIPYAFSVPQDW EVPVSIADLGGTEIDLRF S KEGRL VI
Sbjct: 96  TYRRPDEKSGGHGVGWSPIIPYAFSVPQDWNEVPVSIADLGGTEIDLRFASPKEGRLSVI 155

Query: 153 VAPVQRFSDVIGDDATIEMVGPPEKVISAFGPEVIGENVEGKVMNMSVAEHNGRTYYQFE 212
           VAPV RF+D +GDD  IE +G P KVI+AFGPEVIGENVEGKV++ +VAEH+GR YYQFE
Sbjct: 156 VAPVLRFADNLGDDVKIENIGQPAKVINAFGPEVIGENVEGKVLSSNVAEHDGRLYYQFE 215

Query: 213 LEPPHVLITATAAGNRLYLFSVTGNGLQWKRHFSDLKRIADSFRVV 259
           LEPPHVLITATAAGNRLYLFSVTGNGLQWKRH+ DLKRIA SFR+V
Sbjct: 216 LEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYKDLKRIASSFRIV 260

BLAST of Csor.00g035990 vs. TAIR 10
Match: AT3G56650.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-17
Identity = 70/265 (26.42%), Postives = 131/265 (49.43%), Query Frame = 0

Query: 9   VPFSCNFHQS-KPPSHILQKGVPAVGGEKENRSPILNRRSVLLSGVSLVSSAGLGLQSEC 68
           VP S  F  S K  + I  +    V   ++ + P   RR  LL   ++   A L L+   
Sbjct: 7   VPTSKIFSVSPKSSASIKARSRVVVASSQQQQQP---RRRELLLKSAVAIPAILQLKEAP 66

Query: 69  LAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWEEVPV 128
           ++A ++  +   +P    P +  +  ++     +     G   + PY F +P +W+++ +
Sbjct: 67  ISAAREVEVGSYLP--LSPSDPSFVLFKAKPSDTPALRAG--NVQPYQFVLPPNWKQLRI 126

Query: 129 SIADLGG--------TEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVI 188
           +    G           I+++F++ K+G++ V+ +P+ R ++    +ATIE +G PEKVI
Sbjct: 127 ANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTN--KPNATIEDLGEPEKVI 186

Query: 189 SAFGPEVIGENVEG-KVMNMSVAEHNGRTYYQFELEPP------HVLITATAAGNRLYLF 248
           ++ GP V G + +  +++  S+ +   +TYY++ LE P      H L  ATA G+ + LF
Sbjct: 187 ASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSHNLAKATAKGSTVVLF 246

Query: 249 SVTGNGLQWKRHFSDLKRIADSFRV 258
            V+    QW+     L+ I DSF++
Sbjct: 247 VVSATEKQWQSSQKTLEAILDSFQL 262

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
O492924.5e-9877.88PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 ... [more]
Q9LXX51.5e-1626.42PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
KAG6592174.11.82e-187100.00PsbP domain-containing protein 4, chloroplastic, partial [Cucurbita argyrosperma... [more]
XP_022936523.12.12e-18699.22psbP domain-containing protein 4, chloroplastic [Cucurbita moschata] >KAG7025035... [more]
XP_022975015.18.64e-18699.22psbP domain-containing protein 4, chloroplastic [Cucurbita maxima][more]
XP_023534875.12.48e-18598.45psbP domain-containing protein 4, chloroplastic [Cucurbita pepo subsp. pepo][more]
XP_022154428.11.02e-15081.47psbP domain-containing protein 4, chloroplastic [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A6J1FDH11.03e-18699.22psbP domain-containing protein 4, chloroplastic OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1IFH34.18e-18699.22psbP domain-containing protein 4, chloroplastic OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1DKA34.92e-15181.47psbP domain-containing protein 4, chloroplastic OS=Momordica charantia OX=3673 G... [more]
A0A0A0K5017.64e-15080.22PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G322590 PE=4 S... [more]
A0A5A7T2U11.46e-14580.22PsbP domain-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
Match NameE-valueIdentityDescription
AT1G77090.13.2e-9977.88Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein [more]
AT3G56650.11.1e-1726.42Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.1000.10Mog1/PsbP, alpha/beta/alpha sandwichcoord: 111..258
e-value: 5.1E-24
score: 87.2
NoneNo IPR availablePANTHERPTHR31407:SF38PSBP DOMAIN-CONTAINING PROTEIN 4, CHLOROPLASTICcoord: 32..258
NoneNo IPR availablePANTHERPTHR31407FAMILY NOT NAMEDcoord: 32..258
IPR002683PsbP, C-terminalPFAMPF01789PsbPcoord: 114..257
e-value: 1.1E-11
score: 45.0
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichSUPERFAMILY55724Mog1p/PsbP-likecoord: 106..257

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g035990.m01Csor.00g035990.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009507 chloroplast
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0009523 photosystem II
molecular_function GO:0005509 calcium ion binding