Csor.00g035990 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGATCGACTATGTTCGCCACTGTTCCATTCTCCTGCAACTTTCACCAATCAAAGCCTCCTTCCCACATTCTCCAAAAGGGGGTTCCGGCCGTCGGTGGCGAAAAGGAGAATCGGTCTCCCATTTTGAATCGGAGATCGGTTTTGCTATCCGGTGTTTCTTTGGTTTCTTCTGCGGGTTTGGGGCTGCAGAGCGAGTGTTTGGCTGCGGTTAAGCAAGGTCTTCTTGCTGGGAGGATTCCTGGGTTGTCTGAACCAGATGAACAGGGTTGGCTTTTCTTAACCACTTGAATTCTGTATCTAAGTAATCCTTACTGTCGTTTTGTTTCTTGTTTACATCTATGATTTGTTTCTTTGTTTCAATTGGTGGAATCTTCTGGTTGCTGCAGATTGTGGATTGTGAAATACCTTTGTTCGTGCTATGTATATGAATTTTAATATCTAACCTTATTTTAGTTCATGTAGTTTAAAATTTGTAATGGTTCATGTAGAATTTTTTGCATGTGTTGATGGATTAATCTGTAGGGAACAAATATGTTTTTAAACTAGAGAATAGATATTGAAAATGATGCATGATTTTCTATATTGTTTTTGGTGATGTAGTTAGTTAATTCCATCCTGTTAGTTTCTGGAGTTTCTATTGTTTTTGTGAGATCCTACATCGATTAGAGAAGGGAACGACATTGATGGGAGAGGGGAATGAGTGCCAGTGAGGACCTTGGACCCCTAAGAGGAGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCATACACATTTTGACAACCTTGAGGTGAAGTTCGAAAGGGGAAAGCCGAAAGAGGACAATATTTGCTAGCGGTGGGCTTGAGCTGTTACAAAATGGTATCAGAGCCAGACACTGCAGGGAGTGGATTGTGAGATCCTACATCGGTTGGGGAGGAGAACGAAACATTCTTCATAAGGGTGTGGAAACCTCTCTCTAGCATACACATTTTGAAAACTTTGAGGGGAATTACGAAAGGGGAAAGCCTAAAGAGGACAATATCTACTAGCGATAGGCTTGAACTGTTATAAAATGGTATAAGAGCCAGACACCGGGTGGTGTGTCAGCGAGGACGTTGGGCCTCAAAGGAGGGTGGATTGTGAGATCCCACATCGATTAGAGAAGGGAACAACTGGAGAGGGAAATGAGTGCCAGTGATGACGCTAACCCCAAAGGGGTGTGGATTGTGAGATCTGCTGCCATCGGTGGGCTTGGGTTGCTAGTGGTGAGATCCACTGCATTAAAAGAAGCAAACAGCGCTGATCATGCCATGTTTTCTATATCAAGTTTACATAGCATCTGGTGTGCTTGTGCAGGAATCTCTTGTATTAATCAGAATATATGCAGCAAATTTCATTCTTGACCATTGAAAGCTTTTAAACTCAAGCTTAGCATATCTGGTTTCTTGTTTGTTGCCTGCTCAGACAGGTTGGAGGACATATCGTAGACCCGACGAGAAGTCCGGTGGGCATGGAGTTGGATGGAGTCCTATTATTCCTTATGCCTTTTCAGTTCCACAAGACTGGGAAGAGGTAACTGCTGTTAGATGTTTTTTTCCCTTTTAACCTTATTAAAGATGCTGTTAAGAAGTACAAAAGGAACAAATGGCTTCTACTTCAATCAGTTTCTTCATTAGATCAGAGAAACTAACGAAACTTGATCAACCACTTTAGCTAACAAGATATTGACATGGGTTGTTAGTTCCTTCATGAGTTTGTGGACAGTTAAATGTTTCTGGGTTAGTGGCTCTGAGATCCCACGTCGGTTGGAAAGAGGAACGAAGCATTCCTTATAAGGGAATGGAAACTTCTCCTTAGTAAACGTGTTTCAAAACTGTGAGACTGACGGCGATACGTAACATGTTGAAGTGGACAATATCTACTAGCAGTGGGCTTGGGCTTGGACTATTACAAATGGTATCAGAGTTAGAAACTGAGCAGTGTGCCAGCGAGGATACTAAGCTTCCAAAGGGAGTGGATTGTGAGATCTCACATCGGTTGGAGAGGGGAACGAAGCATTCCTTATAAGGGTGTGGAAACCTCTCTCTAGTAGACGTGTTTTAGAACCGTGAGACTGACGGCGATACGTAACGGGTTGAAGTGGATAATATCTACTAGCGGTGGGCTTGGACTATTACAAATGGTATCAAAGGCAGACACCAGGCAGTGTGCCAGCGAGGATGCTGGGTTCCCAAAAGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGATGAACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCTCTAGTAAATGCATTTTAAAATCGTGAGGCTGACGGCGATACGTAACGGGCTGAAGCGGACAATATCTACTAACGGTGGGCTTGGACTGTTACAAATGGTATCAAAGCTAGACACCTGACAGTGTGCCAACGAGGACTCTGGGCTCCCAAAGGAGGTGGTGGATTGTGAGATCCCATATCGGTTGGAGAGGGGAACGAAGCATTCCTTATAAGGTGCATTCCTTATAAGGTTGTAGAAACCTCTCTCTAGTAGACCCGTTTTAAAACCATGAGACTGACGGCGATACGTAACGGGCTAAAGGGAACAATATCTATTAGCGATGGGTTTGGATTGTTCCCGTGGTCTTTTGGTATTTGCATTGGGGTGCATCAGGTTTCCTGTTGATTAGAGGAGTAAGCACAATGTATCATGTCTGCCAGCATCCAATGATATCTATTCCCAATTTATTTCTTTTCTAGGAATTGAAAAGTCTCGTCCTAGTTAGCTATGTCAAAGCAGACATGACACAATGTGCTTTTGAGTTGCAGGTTCCTGTGTCAATTGCCGATCTTGGAGGGACAGAGATTGATCTCAGATTCAAAAGCTCAAAGGAAGGTCGTCTGTTCGTCATCGTTGCGCCCGTTCAACGATTTTCCGATGGTGCATTTCCCCGAAACTTTATACTTGTTCAACTTTCCATTTTAAATAAACTATACTGCTAAATGATGCATTCATTGTCATAATCCTGTGAAGTTATCGGCGACGATGCAACGATTGAAATGGTTGGTCCTCCAGAGAAAGTAATCAGTGCGTTCGGACCAGAAGTGATCGGAGAAAACGTAGAAGGGAAGGTGATGAACATGAGCGTGGCAGAGCATAATGGAAGAACATATTATCAGTTTGAATTGGAGCCTCCTCATGTTTTGATCACAGCAACAGCGGCAGGAAACCGTCTGTATCTATTCAGTGTAACAGGAAATGGTAAGACACTACCAAGAACGCTGTAGATATGATATGATATGATATCAATTGTTTTCCATTAGAACTGAAGGAAGCTTGTTTTTGTTTCTCTGGGTGTTCTTATAGGGCTTCAATGGAAGAGACATTTCAGCGACCTGAAGCGGATAGCGGATTCCTTTCGTGTCGTGTGA ATGGGATCGACTATGTTCGCCACTGTTCCATTCTCCTGCAACTTTCACCAATCAAAGCCTCCTTCCCACATTCTCCAAAAGGGGGTTCCGGCCGTCGGTGGCGAAAAGGAGAATCGGTCTCCCATTTTGAATCGGAGATCGGTTTTGCTATCCGGTGTTTCTTTGGTTTCTTCTGCGGGTTTGGGGCTGCAGAGCGAGTGTTTGGCTGCGGTTAAGCAAGGTCTTCTTGCTGGGAGGATTCCTGGGTTGTCTGAACCAGATGAACAGGGTTGGAGGACATATCGTAGACCCGACGAGAAGTCCGGTGGGCATGGAGTTGGATGGAGTCCTATTATTCCTTATGCCTTTTCAGTTCCACAAGACTGGGAAGAGGTTCCTGTGTCAATTGCCGATCTTGGAGGGACAGAGATTGATCTCAGATTCAAAAGCTCAAAGGAAGGTCGTCTGTTCGTCATCGTTGCGCCCGTTCAACGATTTTCCGATGTTATCGGCGACGATGCAACGATTGAAATGGTTGGTCCTCCAGAGAAAGTAATCAGTGCGTTCGGACCAGAAGTGATCGGAGAAAACGTAGAAGGGAAGGTGATGAACATGAGCGTGGCAGAGCATAATGGAAGAACATATTATCAGTTTGAATTGGAGCCTCCTCATGTTTTGATCACAGCAACAGCGGCAGGAAACCGTCTGTATCTATTCAGTGTAACAGGAAATGGGCTTCAATGGAAGAGACATTTCAGCGACCTGAAGCGGATAGCGGATTCCTTTCGTGTCGTGTGA ATGGGATCGACTATGTTCGCCACTGTTCCATTCTCCTGCAACTTTCACCAATCAAAGCCTCCTTCCCACATTCTCCAAAAGGGGGTTCCGGCCGTCGGTGGCGAAAAGGAGAATCGGTCTCCCATTTTGAATCGGAGATCGGTTTTGCTATCCGGTGTTTCTTTGGTTTCTTCTGCGGGTTTGGGGCTGCAGAGCGAGTGTTTGGCTGCGGTTAAGCAAGGTCTTCTTGCTGGGAGGATTCCTGGGTTGTCTGAACCAGATGAACAGGGTTGGAGGACATATCGTAGACCCGACGAGAAGTCCGGTGGGCATGGAGTTGGATGGAGTCCTATTATTCCTTATGCCTTTTCAGTTCCACAAGACTGGGAAGAGGTTCCTGTGTCAATTGCCGATCTTGGAGGGACAGAGATTGATCTCAGATTCAAAAGCTCAAAGGAAGGTCGTCTGTTCGTCATCGTTGCGCCCGTTCAACGATTTTCCGATGTTATCGGCGACGATGCAACGATTGAAATGGTTGGTCCTCCAGAGAAAGTAATCAGTGCGTTCGGACCAGAAGTGATCGGAGAAAACGTAGAAGGGAAGGTGATGAACATGAGCGTGGCAGAGCATAATGGAAGAACATATTATCAGTTTGAATTGGAGCCTCCTCATGTTTTGATCACAGCAACAGCGGCAGGAAACCGTCTGTATCTATTCAGTGTAACAGGAAATGGGCTTCAATGGAAGAGACATTTCAGCGACCTGAAGCGGATAGCGGATTCCTTTCGTGTCGTGTGA MGSTMFATVPFSCNFHQSKPPSHILQKGVPAVGGEKENRSPILNRRSVLLSGVSLVSSAGLGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVISAFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHFSDLKRIADSFRVV Homology
BLAST of Csor.00g035990 vs. ExPASy Swiss-Prot
Match: O49292 (PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD4 PE=1 SV=2) HSP 1 Score: 359.0 bits (920), Expect = 4.5e-98 Identity = 176/226 (77.88%), Postives = 195/226 (86.28%), Query Frame = 0
BLAST of Csor.00g035990 vs. ExPASy Swiss-Prot
Match: Q9LXX5 (PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD6 PE=1 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 1.5e-16 Identity = 70/265 (26.42%), Postives = 131/265 (49.43%), Query Frame = 0
BLAST of Csor.00g035990 vs. NCBI nr
Match: KAG6592174.1 (PsbP domain-containing protein 4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 523 bits (1348), Expect = 1.82e-187 Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0
BLAST of Csor.00g035990 vs. NCBI nr
Match: XP_022936523.1 (psbP domain-containing protein 4, chloroplastic [Cucurbita moschata] >KAG7025035.1 PsbP domain-containing protein 4, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 521 bits (1341), Expect = 2.12e-186 Identity = 256/258 (99.22%), Postives = 258/258 (100.00%), Query Frame = 0
BLAST of Csor.00g035990 vs. NCBI nr
Match: XP_022975015.1 (psbP domain-containing protein 4, chloroplastic [Cucurbita maxima]) HSP 1 Score: 519 bits (1337), Expect = 8.64e-186 Identity = 256/258 (99.22%), Postives = 257/258 (99.61%), Query Frame = 0
BLAST of Csor.00g035990 vs. NCBI nr
Match: XP_023534875.1 (psbP domain-containing protein 4, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 518 bits (1334), Expect = 2.48e-185 Identity = 254/258 (98.45%), Postives = 257/258 (99.61%), Query Frame = 0
BLAST of Csor.00g035990 vs. NCBI nr
Match: XP_022154428.1 (psbP domain-containing protein 4, chloroplastic [Momordica charantia]) HSP 1 Score: 431 bits (1107), Expect = 1.02e-150 Identity = 211/259 (81.47%), Postives = 230/259 (88.80%), Query Frame = 0
BLAST of Csor.00g035990 vs. ExPASy TrEMBL
Match: A0A6J1FDH1 (psbP domain-containing protein 4, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111443110 PE=4 SV=1) HSP 1 Score: 521 bits (1341), Expect = 1.03e-186 Identity = 256/258 (99.22%), Postives = 258/258 (100.00%), Query Frame = 0
BLAST of Csor.00g035990 vs. ExPASy TrEMBL
Match: A0A6J1IFH3 (psbP domain-containing protein 4, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111473925 PE=4 SV=1) HSP 1 Score: 519 bits (1337), Expect = 4.18e-186 Identity = 256/258 (99.22%), Postives = 257/258 (99.61%), Query Frame = 0
BLAST of Csor.00g035990 vs. ExPASy TrEMBL
Match: A0A6J1DKA3 (psbP domain-containing protein 4, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021699 PE=4 SV=1) HSP 1 Score: 431 bits (1107), Expect = 4.92e-151 Identity = 211/259 (81.47%), Postives = 230/259 (88.80%), Query Frame = 0
BLAST of Csor.00g035990 vs. ExPASy TrEMBL
Match: A0A0A0K501 (PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G322590 PE=4 SV=1) HSP 1 Score: 428 bits (1100), Expect = 7.64e-150 Identity = 215/268 (80.22%), Postives = 236/268 (88.06%), Query Frame = 0
BLAST of Csor.00g035990 vs. ExPASy TrEMBL
Match: A0A5A7T2U1 (PsbP domain-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1784G00200 PE=4 SV=1) HSP 1 Score: 417 bits (1072), Expect = 1.46e-145 Identity = 215/268 (80.22%), Postives = 233/268 (86.94%), Query Frame = 0
BLAST of Csor.00g035990 vs. TAIR 10
Match: AT1G77090.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein ) HSP 1 Score: 359.0 bits (920), Expect = 3.2e-99 Identity = 176/226 (77.88%), Postives = 195/226 (86.28%), Query Frame = 0
BLAST of Csor.00g035990 vs. TAIR 10
Match: AT3G56650.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein ) HSP 1 Score: 88.2 bits (217), Expect = 1.1e-17 Identity = 70/265 (26.42%), Postives = 131/265 (49.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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