Csor.00g035730 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g035730
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionU6 snRNA-associated Sm-like protein LSm4
LocationCsor_Chr09: 6366323 .. 6371083 (+)
RNA-Seq ExpressionCsor.00g035730
SyntenyCsor.00g035730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGAGGTTTGTGGGACTATTGGCGTGTCGTGGAGTCAGGGAGGGCGTGTGGAGTATTCATGCGTTATGTTATGTACGTTTTACGTTATGATAAATATAAAATGATAATGTACAAAAACTATATAATAAAATTTTAACTTATAATAAAATAATATAGTTCACTTCTTAAGTTAACGTGAAATTAGACATATTTATGAGGTGGCTGGAGATGAGAAGCCTTCTCCATTCTCATCCTCTTTTTTATTCTCCTTTAGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTACTTCATAATTTTCATTTTACAATATATTTTTTTTATTAAAATATATAAAAAAGAATATAATATAATGTATAATATAGTCTCGTTTCTCATCCAATTTATTTAACGAGGAGAAATCTCTCCCTATTCTTGTTTAAACACGAGAATACTCTACCTCTTTTTGGTCGTGTTTTCGTAGAAACTTAACCTCATGTCTAACGAGGAGAAATCTCTCCCTATTCCTGTTTAAACACGGGAACACTCAACCTCTTTTTGGTCGGGTTTTCGTAGAATCTTAACCTCGTGTCTAATGAGGAGAAATCTCTCCCTATTCCTGTTTAAACACGAGAATACCCCACCTCTTTTTGGTCGGGTTTTCGTAGAATCTTAACCTCGTGTCTAACGAGGAGAAATCTCTCCCTATTCCTGTTTAAACACGAGAATACCCCACCTCTTTTTGGTCGGGTTTTTGTAGAATCTTAACCTCGTGTCTAACGAGGAGAAATCTCTCCCTATTCCTGTTTAAACACGACTTATTTTTGGAATCTAACGATGACTCCCTATTCTTGTTTAAACACGGGAATACTCCACCTCTTTTTGGTCGGGTTTTTGTAGAATCTTAACCTCGTGTCTAACGAGGAGAAACCTCTCCCTATTCCTGTTTAAACACAGGAATACTCCACCTTTTTTTGGTTGGGTTTTCTTAGAATCTTAACCTCATGTCTAACGAGGAGAAATCTCTCCCTACTCCTGTTTAAACACGGGAATTACTCCACCTCTTTTTGGTCAAGTTTTGGTAGAATCTTAACCTCGTGTCTAACGAGGAGAAATCTCTCTCTATTCCAATTTAAACACGGGAACACTCCACCTCTTTTTGGTCGGATTTTCTTAGAATCTTAACCTCGTACCATAAATGATCTTCCCTAGAAATTTAATACTCTTTTCAAAAGCTTGATCTTTAAAAAAAATTAAAAAATTTAAAATGGGATTAAATTAAAAGAAAAAGAAACGAAACCCTAGGATCCGCCGATCGAATGGATCGAAACTCAAATTTTTTCAATATCGAACTGGTTCGGTTGTGTTTTCTTCTGAGATAGTAAAAATATTGTTGGCGGCATCATCAGAACAATTAGATTTCTTCGTCCTAGCTGCCTAATGAGTCATTTCGACCGCTTTTGAATTCATTCGAAAAAAAATTCCTACTCTACTCGAGAACTTGTTTATCTTTCGGATCGAGAGCTTCGAAGGTTAGTGACTCTCTTGATTTCATTAGTCTACGAATCAATGTTTCTTTTCATGAATCTGTTCATTCAAATGTATGATCATCTGGAAACTTGAAATTCTTTTGGTTTTTTTCCCGACAGATTGGTTTCCGCTTCTAGATTCTGCTTCGTGTCCTTAAAGATGGTATGTTTCCCTCGTGGTCTTATTTGGTCCTGTTGTTAAATTTTGCTGGTAGTGTAACCTAAGGGTATGTTGATTCATTCAATGCCTTGGATTAATTGAACTATTTTGCTTCAAATTCGTCGTCGTTACTTGTTTCTTTGCTCTTTTCCCTTCTTGGGTACGCTCTAATCGATTTTTGTTTTTACTTCAGCTTCCCCTTTCTCTTCTAAAGACTGCTCAAGGGCATCCCATGGTAAGGGCTTCTCTCAAAATCTTCTGTAAATATACGGGTGAGCTTACGGTTAGGAATCACGGATCTCCACAATGGTACGATATTGTCCACTTTGACCACTTTGAGCATAAGCTCTCATGGCCTTGCTTTTGGCTTCCCCAAAAGGCCTCGTACCAATGGAGATTACTTGATCATTCTTTAAATTAGTGAATGTGAGACTCCCTCCCAACAATCCTCAACAATCCTCCCATCGAACAAAGTACACTATAGAGCCTCCCCTGAGGCCTATGGAGCCCCTCGAATAGCCTCCCCTTAATCAAGGCTCGACTCCTTCTCTGGTGTCCTTCAACAAATTACACCCTTTGTTCGACACTTGAGTCACTTTTAACTACACCTTTGAGGCTCACAACTTCTTTGTTCGACATTTGAGGATTTTATTGACATGGCTAAGTTATGGGTATGCCTCTGATACTATGTTATGAATCAAGACTCTCCACAATGGTATAATATTGTCTACTTTGAGCATGAACTCTCATGGCTTTGCTTTGGGCTTCTCCAAAAGGCCTCATACCAATAGAGATGTATTCCTTACTCATGAACCCATGATCATTCCCTAAATTAGCCAATGTAGGAATCCCTCCCAATAATTCTAACAATTACTGGCAGCTAGACTAAGGTCAATAGATAGACTCGCATACGATTGTCAAGAAGCTTTCAACATTTGATATCCAGATAGTTTGTCATAAGGAATCTAATGGCTAAATGTTACTACGCCAATGCATGATGGTTGTTAAGGGCTTGGTCTGAGCTATTGAACTTATATTTTAGGACTCTTTGTTATGAACTTGATTTAAGGATATATAATTTCTGTATTGCAACAGTTGGTGGAATTGAAAAATGGCGAGACTTACAATGGCCACTTGGTTAACTGCGATACATGGATGAACATTCATCTTCGGGAAGTCATCTGTACTTCTAAAGTATGCACGATGAACTTTTATCTTTTTCGTTTGTTTATATTTCTTTTTCTAGGAGTTTGAACTGATAATAACTTGGTTTTTCAATTATCAAATGTTAGGATGGTGACCGGTTTTGGCGAATGCCTGAATGTTATATTCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTATTCATGCAAGTTGTTGCCGTTCTTAAGTGTCTACTTGTGACTTTTGATATGTGGACCTTATATATATGCTTGCATAACCGAAAACACTCTATGTCTTCAAATTTAGTTCTTCTTTGTGAGATCCCACATCGGTTGGAGAGGCAAACGAAGAATTCTTTATAAGGATGTGGAAACCTCTCCCTAGTAAACGCGTTTTAAAACCTTGAGGGGAAGCCCAGAAGGGAAAGCCCAAAGAGGACAATATTTGCTAGCGGTGGGCTTGGGTTGTTACAAATGGTATCAGAGCCAGACACCAGGCGGTACGCCATTAAGGACGTTGGACCTCAAAGATGGGTGGATTGTGAGATCCCACATCGATTTAAGAGAAGAATAAGTGCCAGCGAGGACGTTGGGCCCCGAAGTGGGTGGATTGTGAGATCCCAGATCGATCAGAGAGGGGAACAAGTGCCAGTGAGGACGCTGGGCCCCAAAGGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGGAGCAAAACATTCTTTATAAGGACGTGGAAACCTTTCCCTAGCAAACGCATTTTAAAACCTTGAGGAGAAGCCCGGAAAGGAAAGCCCAAAGAGGACAATGTCTGTTAGCGATGGGCTTGGACGGTTACATTCCTCCACTTCGGTCACATGCTTATCAGCCACATCTCATTTTGGTTTCTAGTTTCTAATTTTATTTCCACTCTTCTTTTACTTATCCTTTTACAACTTTGTTATCATCTTTAACTTGTTTATATGATTTTATCCATCCAGATCTACCAAAAAAGTTACTTATTAAAACTGTTCTTTGTTTTCTAAGGGTAGAAGTTATCATTCCCTTCTTTTACTTGTCCTAACCAGCTTAGTAAATGCGTACTAAGTTCTCATACAAACTGTTGCAATGTTTCTTGCTCTCTGTTTCACTAATTTTGTATTGCTTCTCAGGTTATTGATAAAGTTCAGGAAGAAACCAAAAGCCGTACAGGTATGCTGTTATGCTTACATTTGATAATGTTTTCATGTAGTAAACTCTTGATTTTCCATACACAACAAATGAGTTGAATAAACCACGCCATTAAAGACTAAGACCGATTTCTCTTTTGCCATTGGTTTTGCCTAATTCGAGCATTAGTATCAAGGAAACCGATACTTGGACATTGTTTTTTTCAGATAGGAAACCTCCAGGTGTAGGGCGTGGAAGAGGAAGAGGGCGTGAGGATGGTCCTGGTGGAAGACCATCTAAAGGAATGGGGCGAGGCTTCGATGACGGTGCTAAAGCTGCTTCTGGAGGCCGTGGAAAGGGTAGCTCCGGTGGAAAACTCGGTGCCAACAGAGGTAAATAAACTGAATTGTTATTATTTATCGAACACGAATTTGTTGTTTCAGTCCCCATTGGATAACAGTTTTGGTTCTTTTGTTCCCTGTAAAAACTATACCCATTATCTGTTCATGTATTCTTCATTTAGTTTTTCACCTTTAGAAACACTTGGGCCAATTTTTTAAAACAAAATACGAGTTTTTAAAACCGTTAACGTTTTTTGATTTTCTAACATTTGGCTATGGTTTCGAGTTGACTGACAAAAAAACTATGTTATCAAATGGACTTTTTATTCTCTCTTATCGATGTCGGCGCTATCGTATTCACTAAATAATGCCATGTTCGTTTATTTTAATTTAGTTGGAGGCAGGGGCCGAGGGTGA

mRNA sequence

ATGGTTGAGGTTTGTGGGACTATTGGCGTGTCGTGGAGTCAGGGAGGGCGTGTGGAGTATTCATGCGTTATGTTACTTGTTTATCTTTCGGATCGAGAGCTTCGAAGATTGGTTTCCGCTTCTAGATTCTGCTTCGTGTCCTTAAAGATGCTTCCCCTTTCTCTTCTAAAGACTGCTCAAGGGCATCCCATGTTGGTGGAATTGAAAAATGGCGAGACTTACAATGGCCACTTGGTTAACTGCGATACATGGATGAACATTCATCTTCGGGAAGTCATCTGTACTTCTAAAGATGGTGACCGGTTTTGGCGAATGCCTGAATGTTATATTCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTTATTGATAAAGTTCAGGAAGAAACCAAAAGCCGTACAGATAGGAAACCTCCAGGTGTAGGGCGTGGAAGAGGAAGAGGGCGTGAGGATGGTCCTGGTGGAAGACCATCTAAAGGAATGGGGCGAGGCTTCGATGACGGTGCTAAAGCTGCTTCTGGAGGCCGTGGAAAGGGTAGCTCCGGTGGAAAACTCGGTGCCAACAGAGTTGGAGGCAGGGGCCGAGGGTGA

Coding sequence (CDS)

ATGGTTGAGGTTTGTGGGACTATTGGCGTGTCGTGGAGTCAGGGAGGGCGTGTGGAGTATTCATGCGTTATGTTACTTGTTTATCTTTCGGATCGAGAGCTTCGAAGATTGGTTTCCGCTTCTAGATTCTGCTTCGTGTCCTTAAAGATGCTTCCCCTTTCTCTTCTAAAGACTGCTCAAGGGCATCCCATGTTGGTGGAATTGAAAAATGGCGAGACTTACAATGGCCACTTGGTTAACTGCGATACATGGATGAACATTCATCTTCGGGAAGTCATCTGTACTTCTAAAGATGGTGACCGGTTTTGGCGAATGCCTGAATGTTATATTCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTTATTGATAAAGTTCAGGAAGAAACCAAAAGCCGTACAGATAGGAAACCTCCAGGTGTAGGGCGTGGAAGAGGAAGAGGGCGTGAGGATGGTCCTGGTGGAAGACCATCTAAAGGAATGGGGCGAGGCTTCGATGACGGTGCTAAAGCTGCTTCTGGAGGCCGTGGAAAGGGTAGCTCCGGTGGAAAACTCGGTGCCAACAGAGTTGGAGGCAGGGGCCGAGGGTGA

Protein sequence

MVEVCGTIGVSWSQGGRVEYSCVMLLVYLSDRELRRLVSASRFCFVSLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDDGAKAASGGRGKGSSGGKLGANRVGGRGRG
Homology
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BLAST of Csor.00g035730 vs. ExPASy Swiss-Prot
Match: Q43582 (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.7e-58
Identity = 123/150 (82.00%), Postives = 127/150 (84.67%), Query Frame = 0 

Query: 50  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 109
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 110 IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGR-GREDGPGGRPSKGMGRGFD 169
           +RGNTIKYLRVPDEVIDKVQEE KSRTDRKPPGVGR R R GR+D   GR  KG+GRG D
Sbjct: 61  VRGNTIKYLRVPDEVIDKVQEEAKSRTDRKPPGVGRARARGGRDDSAVGRQPKGIGRGMD 120

Query: 170 DGAKAASGGRGKGSSGGKLGANRVGGRGRG 199
           DG    + GRGKG    K G  R GGRGRG
Sbjct: 121 DG---GAKGRGKGGPSAKSG-GRGGGRGRG 146

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BLAST of Csor.00g035730 vs. ExPASy Swiss-Prot
Match: Q9LGE6 (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0256900 PE=2 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.0e-57
Identity = 124/151 (82.12%), Postives = 130/151 (86.09%), Query Frame = 0 

Query: 50  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 109
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGD+FWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY 60

Query: 110 IRGNTIKYLRVPDEVIDKVQEET-KSRTDRKPPGVGRGRGRGR-EDGPGGRPSKGMGRGF 169
           IRGNTIKYLRVPDEVIDKVQEET KSR+DR+PPGVGRGRGRG     PGGR   G+GRG 
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETSKSRSDRRPPGVGRGRGRGDIGTKPGGR---GIGRGQ 120

Query: 170 DDGAKAASGGRGKGSSGGKLGANRVGGRGRG 199
           DDG     GGRG+G  GGK G  + GGRGRG
Sbjct: 121 DDGGSKGGGGRGRGGIGGK-GGIKGGGRGRG 147

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BLAST of Csor.00g035730 vs. ExPASy Swiss-Prot
Match: Q9ZRU9 (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica OX=28930 GN=LSM4 PE=2 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.3e-57
Identity = 122/150 (81.33%), Postives = 128/150 (85.33%), Query Frame = 0 

Query: 50  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 109
           MLPLSLLKTAQGHPMLVELK+GETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMP+CY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCY 60

Query: 110 IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRG-FD 169
           IRGNTIKYLRVPDEVIDKVQEETKSR DRKPPGVGRGRGRGRE+G G R  +G GR    
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREEGSGARQVRGAGRDVMM 120

Query: 170 DGAKAASGGRGKGSSGGKLGANRVGGRGRG 199
             AKA    RG+G+S GK G    GGRGRG
Sbjct: 121 QVAKAWVEVRGRGASAGKSGGR--GGRGRG 148

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BLAST of Csor.00g035730 vs. ExPASy Swiss-Prot
Match: F4K4E3 (Sm-like protein LSM4 OS=Arabidopsis thaliana OX=3702 GN=LSM4 PE=1 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 5.6e-56
Identity = 118/149 (79.19%), Postives = 124/149 (83.22%), Query Frame = 0 

Query: 50  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 109
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 110 IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 169
           IRGNTIKYLRVPDEVIDKVQEE K+RTDRKPPGVGRGRGRG +DG               
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEE-KTRTDRKPPGVGRGRGRGVDDG--------------- 120

Query: 170 GAKAASGGRGKGSSGGKLGANRVGGRGRG 199
           GA+    GRG+G+S GK+G NR  GRGRG
Sbjct: 121 GAR----GRGRGTSMGKMGGNRGAGRGRG 129

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BLAST of Csor.00g035730 vs. ExPASy Swiss-Prot
Match: Q9QXA5 (U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus OX=10090 GN=Lsm4 PE=1 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.4e-38
Identity = 92/149 (61.74%), Postives = 105/149 (70.47%), Query Frame = 0 

Query: 50  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 109
           MLPLSLLKTAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECY
Sbjct: 1   MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60

Query: 110 IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 169
           IRG+TIKYLR+PDE+ID V+EE             +GRGRG   GP  +  KG G     
Sbjct: 61  IRGSTIKYLRIPDEIIDMVREE-----------AAKGRGRG---GPQQKQQKGRG----- 120

Query: 170 GAKAASGGRGKGSSGGKLGANRVGGRGRG 199
                 GG G+G  GG+ G   + G GRG
Sbjct: 121 -----MGGAGRGVFGGR-GRGGIPGAGRG 124

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BLAST of Csor.00g035730 vs. NCBI nr
Match: KAG6592199.1 (hypothetical protein SDJN03_14545, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 387 bits (995), Expect = 1.19e-135
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0 

Query: 1   MVEVCGTIGVSWSQGGRVEYSCVMLLVYLSDRELRRLVSASRFCFVSLKMLPLSLLKTAQ 60
           MVEVCGTIGVSWSQGGRVEYSCVMLLVYLSDRELRRLVSASRFCFVSLKMLPLSLLKTAQ
Sbjct: 1   MVEVCGTIGVSWSQGGRVEYSCVMLLVYLSDRELRRLVSASRFCFVSLKMLPLSLLKTAQ 60

Query: 61  GHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRV 120
           GHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRV
Sbjct: 61  GHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRV 120

Query: 121 PDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDDGAKAASGGRGK 180
           PDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDDGAKAASGGRGK
Sbjct: 121 PDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDDGAKAASGGRGK 180

Query: 181 GSSGGKLGANRVGGRGRG 198
           GSSGGKLGANRVGGRGRG
Sbjct: 181 GSSGGKLGANRVGGRGRG 198

[Close]
BLAST of Csor.00g035730 vs. NCBI nr
Match: XP_022936003.1 (sm-like protein LSM4 [Cucurbita moschata] >XP_022936004.1 sm-like protein LSM4 [Cucurbita moschata] >XP_022936005.1 sm-like protein LSM4 [Cucurbita moschata] >XP_022936006.1 sm-like protein LSM4 [Cucurbita moschata])

HSP 1 Score: 291 bits (745), Expect = 2.77e-98
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 50  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 109
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 110 IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 169
           IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 120

Query: 170 GAKAASGGRGKGSSGGKLGANRVGGRGRG 198
           GAKAASGGRGKGSSGGKLGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGSSGGKLGANRVGGRGRG 149

[Close]
BLAST of Csor.00g035730 vs. NCBI nr
Match: XP_038896461.1 (uncharacterized protein LOC120084721 [Benincasa hispida])

HSP 1 Score: 296 bits (759), Expect = 5.18e-98
Identity = 153/161 (95.03%), Postives = 154/161 (95.65%), Query Frame = 0 

Query: 38  VSASRFCFVSLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSK 97
           VSAS  CFVSLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSK
Sbjct: 152 VSASSVCFVSLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSK 211

Query: 98  DGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGG 157
           DGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSR DRKPPGVGRGRGRGREDGPGG
Sbjct: 212 DGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREDGPGG 271

Query: 158 RPSKGMGRGFDDGAKAASGGRGKGSSGGKLGANRVGGRGRG 198
           RP+KGMGRGFDD AKAASGGRGKG  GGK GANRVGGRGRG
Sbjct: 272 RPAKGMGRGFDDSAKAASGGRGKGGPGGKPGANRVGGRGRG 312

[Close]
BLAST of Csor.00g035730 vs. NCBI nr
Match: XP_023535667.1 (sm-like protein LSM4 [Cucurbita pepo subsp. pepo] >XP_023535668.1 sm-like protein LSM4 [Cucurbita pepo subsp. pepo] >XP_023535669.1 sm-like protein LSM4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290 bits (741), Expect = 1.13e-97
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 0 

Query: 50  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 109
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 110 IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 169
           IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 120

Query: 170 GAKAASGGRGKGSSGGKLGANRVGGRGRG 198
           GAKAASGGRGKG SGGKLGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGSGGKLGANRVGGRGRG 149

[Close]
BLAST of Csor.00g035730 vs. NCBI nr
Match: XP_022975088.1 (sm-like protein LSM4 isoform X1 [Cucurbita maxima] >XP_022975091.1 sm-like protein LSM4 isoform X1 [Cucurbita maxima] >XP_022975095.1 sm-like protein LSM4 isoform X1 [Cucurbita maxima])

HSP 1 Score: 287 bits (734), Expect = 1.31e-96
Identity = 147/149 (98.66%), Postives = 147/149 (98.66%), Query Frame = 0 

Query: 50  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 109
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 110 IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 169
           IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 120

Query: 170 GAKAASGGRGKGSSGGKLGANRVGGRGRG 198
           GAKAASGGRGKG SGGK GANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGSGGKPGANRVGGRGRG 149

[Close]
BLAST of Csor.00g035730 vs. ExPASy TrEMBL
Match: A0A6J1FCD9 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucurbita moschata OX=3662 GN=LOC111442734 PE=3 SV=1)

HSP 1 Score: 291 bits (745), Expect = 1.34e-98
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 50  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 109
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 110 IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 169
           IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 120

Query: 170 GAKAASGGRGKGSSGGKLGANRVGGRGRG 198
           GAKAASGGRGKGSSGGKLGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGSSGGKLGANRVGGRGRG 149

[Close]
BLAST of Csor.00g035730 vs. ExPASy TrEMBL
Match: A0A0A0L3Q6 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis sativus OX=3659 GN=LSM4 PE=3 SV=1)

HSP 1 Score: 291 bits (745), Expect = 3.48e-97
Identity = 151/161 (93.79%), Postives = 153/161 (95.03%), Query Frame = 0 

Query: 38  VSASRFCFVSLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSK 97
           VSAS  CF+SLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSK
Sbjct: 84  VSASSVCFISLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSK 143

Query: 98  DGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGG 157
           DGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSR DRKP GVGRGRGRGREDGPG 
Sbjct: 144 DGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGV 203

Query: 158 RPSKGMGRGFDDGAKAASGGRGKGSSGGKLGANRVGGRGRG 198
           RP+KGMGRGFDDGAKAASGGRGKG  GGK GANRVGGRGRG
Sbjct: 204 RPAKGMGRGFDDGAKAASGGRGKGGPGGKPGANRVGGRGRG 244

[Close]
BLAST of Csor.00g035730 vs. ExPASy TrEMBL
Match: A0A6J1ID83 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucurbita maxima OX=3661 GN=LOC111474057 PE=3 SV=1)

HSP 1 Score: 287 bits (734), Expect = 6.36e-97
Identity = 147/149 (98.66%), Postives = 147/149 (98.66%), Query Frame = 0 

Query: 50  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 109
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 110 IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 169
           IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 120

Query: 170 GAKAASGGRGKGSSGGKLGANRVGGRGRG 198
           GAKAASGGRGKG SGGK GANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGSGGKPGANRVGGRGRG 149

[Close]
BLAST of Csor.00g035730 vs. ExPASy TrEMBL
Match: A0A6J1J2N4 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucurbita maxima OX=3661 GN=LOC111480701 PE=3 SV=1)

HSP 1 Score: 281 bits (718), Expect = 1.74e-94
Identity = 143/149 (95.97%), Postives = 145/149 (97.32%), Query Frame = 0 

Query: 50  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 109
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 110 IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 169
           IRGNTIKYLRVPDEVIDKVQEETK+R DRKPPGVGRGRGRGREDGPGGRP+KGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKTRADRKPPGVGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 170 GAKAASGGRGKGSSGGKLGANRVGGRGRG 198
           GAKAASGGRGKG  GGK GANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]
BLAST of Csor.00g035730 vs. ExPASy TrEMBL
Match: A0A6J1EHL8 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucurbita moschata OX=3662 GN=LOC111433469 PE=3 SV=1)

HSP 1 Score: 281 bits (718), Expect = 1.74e-94
Identity = 143/149 (95.97%), Postives = 145/149 (97.32%), Query Frame = 0 

Query: 50  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 109
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 110 IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 169
           IRGNTIKYLRVPDEVIDKVQEETK+R DRKPPGVGRGRGRGREDGPGGRP+KGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKTRADRKPPGVGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 170 GAKAASGGRGKGSSGGKLGANRVGGRGRG 198
           GAKAASGGRGKG  GGK GANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]
BLAST of Csor.00g035730 vs. TAIR 10
Match: AT5G27720.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 218.8 bits (556), Expect = 4.0e-57
Identity = 118/149 (79.19%), Postives = 124/149 (83.22%), Query Frame = 0 

Query: 50  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 109
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 110 IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 169
           IRGNTIKYLRVPDEVIDKVQEE K+RTDRKPPGVGRGRGRG +DG               
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEE-KTRTDRKPPGVGRGRGRGVDDG--------------- 120

Query: 170 GAKAASGGRGKGSSGGKLGANRVGGRGRG 199
           GA+    GRG+G+S GK+G NR  GRGRG
Sbjct: 121 GAR----GRGRGTSMGKMGGNRGAGRGRG 129

[Close]
BLAST of Csor.00g035730 vs. TAIR 10
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 66.2 bits (160), Expect = 3.3e-11
Identity = 45/134 (33.58%), Postives = 73/134 (54.48%), Query Frame = 0 

Query: 51  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 110
           +P+ LL  A GH + VELK+GE Y G ++ C+   N  L ++  T+KDG +  ++   +I
Sbjct: 7   IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDG-KVSQLEHVFI 66

Query: 111 RGNTIKYLRVPD-----EVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGR 170
           RG+ ++++ +PD      +  ++    K ++     GVGRGRG  R     G+P+ G GR
Sbjct: 67  RGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSL--GVGRGRGAMR-----GKPAAGPGR 124

Query: 171 GFDDGAKAASGGRG 180
           G        +GGRG
Sbjct: 127 G--------TGGRG 124

[Close]
BLAST of Csor.00g035730 vs. TAIR 10
Match: AT1G76300.1 (snRNP core protein SMD3 )

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-09
Identity = 41/130 (31.54%), Postives = 69/130 (53.08%), Query Frame = 0 

Query: 51  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 110
           +P+ LL  + GH + VE+K+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I
Sbjct: 7   IPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFI 66

Query: 111 RGNTIKYLRVPDEVID-KVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 170
           RG+ +++L +PD + +  + ++ + +      GVGRGRG           +KG GRG   
Sbjct: 67  RGSLVRFLVIPDMLKNAPMFKDVRGKGKSASLGVGRGRGAAMR-------AKGTGRG--- 121

Query: 171 GAKAASGGRG 180
                 GGRG
Sbjct: 127 ----TGGGRG 121

[Close]
BLAST of Csor.00g035730 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 55.1 bits (131), Expect = 7.6e-08
Identity = 41/101 (40.59%), Postives = 51/101 (50.50%), Query Frame = 0 

Query: 66  VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE-- 125
           +ELKNG   +G +   D  MN HL+ V  T K G     +    +RGN I+Y  +PD   
Sbjct: 17  IELKNGTIVHGTITGVDVSMNTHLKAVKLTLK-GKNPVTLDHLSVRGNNIRYYILPDSLN 76

Query: 126 -----VIDKVQEETKSRTDRK-PPGVGRGRGRGREDGPGGR 159
                V D  + + K  T  K P G GRGRGRGR  G GGR
Sbjct: 77  LETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRGRGRGGR 116

[Close]
BLAST of Csor.00g035730 vs. TAIR 10
Match: AT4G02840.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 47.4 bits (111), Expect = 1.6e-05
Identity = 41/111 (36.94%), Postives = 52/111 (46.85%), Query Frame = 0 

Query: 66  VELKNGETYNGHLVN----------CDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTI 125
           +ELKNG   +G + +           D  MN HL+ V  T K G     +    +RGN I
Sbjct: 17  IELKNGTIVHGTITDEYTRFYLNRGVDVSMNTHLKAVKLTLK-GKNPVTLDHLSVRGNNI 76

Query: 126 KYLRVPDE-------VIDKVQEETKSRTDRK-PPGVGRGRGRGREDGPGGR 159
           +Y  +PD        V D  + + K  T  K P G GRGRGRGR  G GGR
Sbjct: 77  RYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRGRGRGGR 126

The following BLAST results are available for this feature:
BLAST of Csor.00g035730 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q435822.7e-5882.00Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum OX=4097 P... [more]
Q9LGE61.0e-5782.12Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonic... [more]
Q9ZRU92.3e-5781.33Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica OX=28930 GN... [more]
F4K4E35.6e-5679.19Sm-like protein LSM4 OS=Arabidopsis thaliana OX=3702 GN=LSM4 PE=1 SV=1[more]
Q9QXA52.4e-3861.74U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus OX=10090 GN=Lsm4 PE=1 S... [more]
BLAST of Csor.00g035730 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6592199.11.19e-135100.00hypothetical protein SDJN03_14545, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022936003.12.77e-98100.00sm-like protein LSM4 [Cucurbita moschata] >XP_022936004.1 sm-like protein LSM4 [... [more]
XP_038896461.15.18e-9895.03uncharacterized protein LOC120084721 [Benincasa hispida][more]
XP_023535667.11.13e-9799.33sm-like protein LSM4 [Cucurbita pepo subsp. pepo] >XP_023535668.1 sm-like protei... [more]
XP_022975088.11.31e-9698.66sm-like protein LSM4 isoform X1 [Cucurbita maxima] >XP_022975091.1 sm-like prote... [more]
BLAST of Csor.00g035730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FCD91.34e-98100.00U6 snRNA-associated Sm-like protein LSm4 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A0A0L3Q63.48e-9793.79U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis sativus OX=3659 GN=LSM4 PE=3... [more]
A0A6J1ID836.36e-9798.66U6 snRNA-associated Sm-like protein LSm4 OS=Cucurbita maxima OX=3661 GN=LOC11147... [more]
A0A6J1J2N41.74e-9495.97U6 snRNA-associated Sm-like protein LSm4 OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1EHL81.74e-9495.97U6 snRNA-associated Sm-like protein LSm4 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
BLAST of Csor.00g035730 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G27720.14.0e-5779.19Small nuclear ribonucleoprotein family protein [more]
AT1G20580.13.3e-1133.58Small nuclear ribonucleoprotein family protein [more]
AT1G76300.11.1e-0931.54snRNP core protein SMD3 [more]
AT4G02840.17.6e-0840.59Small nuclear ribonucleoprotein family protein [more]
AT4G02840.21.6e-0536.94Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 54..120
e-value: 1.4E-20
score: 84.4
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 55..119
e-value: 1.3E-16
score: 60.0
NoneNo IPR availableGENE3D2.30.30.100coord: 50..132
e-value: 3.4E-37
score: 127.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..198
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..158
NoneNo IPR availablePANTHERPTHR23338:SF42SM-LIKE PROTEIN LSM4coord: 50..186
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 50..186
IPR034101Sm-like protein Lsm4CDDcd01723LSm4coord: 51..126
e-value: 1.52271E-60
score: 181.235
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 52..172

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g035730.m01Csor.00g035730.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000956 nuclear-transcribed mRNA catabolic process
biological_process GO:0033962 P-body assembly
biological_process GO:0000387 spliceosomal snRNP assembly
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0006396 RNA processing
cellular_component GO:0000932 P-body
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0097526 spliceosomal tri-snRNP complex
cellular_component GO:0005688 U6 snRNP
molecular_function GO:0017070 U6 snRNA binding