Csor.00g035680 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g035680
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	40S ribosomal protein S18
Location	Csor_Chr09: 6424552 .. 6426755 (+)
RNA-Seq Expression	Csor.00g035680
Synteny	Csor.00g035680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAATTCCAGTTTCTTCTCTGCTCTAATTTCCCTCTTGTTCTTCTGTCTACGGTTCTTGAATTCCCTTGATTATTCGTTAGGGTTTTATACTCTTCTCCGAATAATTGATTGTATTGATTTGGCCTTTTTATTTTGTTGCTTTTGTATCTAGTCGCTGGTTGCAAACGAGGATTTTCAGCACATTCTGCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATTATGTTTGCTCTCACTTCAATCAAAGGTATTGGAAGGCGTCTTGCTAACATGGTCTGCAAGAAGGCTGATGTTGACATGAACAAGAGGTATTCGATGCTTTTCCTCTCCCCATTTTCCCTTTTTTGCCGCTTGTCGTCTATCTAGTTTGATGGAAAAATTCGACAATTTGGAGTATTATAAGGATTTCGTTCGTATTTTTAAAATTCTGCATGCTATGAATTTAAGGTGTCAGTTCCTAATATTTTGTAAAGAAATTTAAGCTTTAAGTTTTACATAAAAAAAAACTCAAAGGTGTGAGATATTCGGGAAAAAAGTGGGAGTTCAACATGGGTAATATTTAGGGTTAAATCGTTGAATGATTTGGCATATTTAATGGAGCTTTTCGTCGTCAAAAGAATAATTCTGCTGTGAACTTGTTTTCTGCAGTATATTCTAACATTATCTTTGGGTCAATTACTGTACGATTTAGGATTTTTCTAGTAGTTCGTTCATGTCTGCAGCTGGATTCTGAAAGTAGTATTTTAGTTATTGTGGGAAGAACAAGAAAAAATACAATGAAAACAGAAGGTTGAGTACAGGACCTTGAATCCTTGAGTCTTCCACAGAAAAAACTTCTGCCAGAATTAGGATGTCAAAATACTAGTGAACTTTTTGAGTCTTCTGGTTGACGGATAAAAGGATTACCATTCTGATCTGAGTTATATAAAAGGATGAAAAAAGAAAAGAAATATGTACTGCAACTAGATTCTTAGGTGCTGGAATTATCTTCTGCAGCTTCTTTCTGCCTTTGATAATTTAATGCCATATATTTACCATGCTTACCTGGGTCTGATAAGAGAGCAATGCACGCACAGATGGCTGCTATTCTCTTTTGATGTGTAGCTTTCATCAGAGTAAAGCTGTATCTTCTAATAATAAAACTGGCAGCAACCCGAATACAAACTCACCAACTCCACGGTGAATGACCATAGGTACTAAGCACCTAAATACAGCATGACCTTATAGCTTAATCTAAATATTGTCCCAAAGATTATAGCCAACTAAGAGTATAAACCGAGTGCCTTTATTTCACTGAATGAAATGTGGACAAAATCTTAGTGACGACTTCAAGTTAATTGCCAATAATCAGGACATGACTGAATTCAAACACAGTTCTTCCTCTGTGACATCGACTGAAATATTATGGAGAGAATGCAAATTTCATCACATGCCATAGAGGGTGTTACAATTTAGAGTTCGGGGAAAAACTCAAGTGGCTTGTCTGATATACATCTTTGTTTTCATTTGTTATTTTTGCTAACAGGGCTGGTGAACTAACTGCTGCTGAGTTGGACAATCTCATGGTGGTGGTTGCCAATCCACGACAATTTAAAATTCCTGACTGGTTTCTGAATCGGCAGAAGGACTACAAGGATGGGAAATACTCTCAAGTAGTTTCAAATGCATTGGATATGAAGTTGAGAGATGATTTAGAGCGGTTGAAGAAGATTAGGTAACATCTCTTTTTGTTGTCATATCAACATGCACAGTTTTTTAATTTAACATAAATAAGATAAATGAGGGCAGAACATATCTTTGCAAACCATTATCAGAACTCGATTCAAAACGATCATAAAGTTTTGATCTACTAAGCAGCTGTTAGGTACAATGTTAAAGAAATGCCCCAATAATCCCCTGAAGTACAATAAAGTTCTGATAAAGATCTGTTTCGGAAATTTATAGTCCTCATGAAGCCCTATACTCACTCCATGCATTGTGTTGATTCTTAACAATATTCTTAGAAGTGTTTCATCCTGGGACATCAAGCCCTACTCCTTGCATCATGTACATTTGTAGTTCACGATTAATCTTTGGTACGTCGAATGCAGAAACCACCGAGGTCTAAGGCACTATTGGGGCCTCCGAGTCCGTGGTCAGCACACTAAGACCACTGGTCGCCGAGGTAAAACTGTTGGTGTCTCCAAGAAGCGTTGA

mRNA sequence

ATGTCGCTGGTTGCAAACGAGGATTTTCAGCACATTCTGCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATTATGTTTGCTCTCACTTCAATCAAAGGTATTGGAAGGCGTCTTGCTAACATGGTCTGCAAGAAGGCTGATGTTGACATGAACAAGAGGGCTGGTGAACTAACTGCTGCTGAGTTGGACAATCTCATGGTGGTGGTTGCCAATCCACGACAATTTAAAATTCCTGACTGGTTTCTGAATCGGCAGAAGGACTACAAGGATGGGAAATACTCTCAAGTAGTTTCAAATGCATTGGATATGAAGTTGAGAGATGATTTAGAGCGGTTGAAGAAGATTAGAAACCACCGAGGTCTAAGGCACTATTGGGGCCTCCGAGTCCGTGGTCAGCACACTAAGACCACTGGTCGCCGAGGTAAAACTGTTGGTGTCTCCAAGAAGCGTTGA

Coding sequence (CDS)

ATGTCGCTGGTTGCAAACGAGGATTTTCAGCACATTCTGCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATTATGTTTGCTCTCACTTCAATCAAAGGTATTGGAAGGCGTCTTGCTAACATGGTCTGCAAGAAGGCTGATGTTGACATGAACAAGAGGGCTGGTGAACTAACTGCTGCTGAGTTGGACAATCTCATGGTGGTGGTTGCCAATCCACGACAATTTAAAATTCCTGACTGGTTTCTGAATCGGCAGAAGGACTACAAGGATGGGAAATACTCTCAAGTAGTTTCAAATGCATTGGATATGAAGTTGAGAGATGATTTAGAGCGGTTGAAGAAGATTAGAAACCACCGAGGTCTAAGGCACTATTGGGGCCTCCGAGTCCGTGGTCAGCACACTAAGACCACTGGTCGCCGAGGTAAAACTGTTGGTGTCTCCAAGAAGCGTTGA

Protein sequence

MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR

Homology

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BLAST of Csor.00g035680 vs. ExPASy Swiss-Prot
Match: P34788 (40S ribosomal protein S18 OS=Arabidopsis thaliana OX=3702 GN=RPS18A PE=1 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 2.8e-79
Identity = 146/152 (96.05%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLAN+VCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Csor.00g035680 vs. ExPASy Swiss-Prot
Match: Q8ISP0 (40S ribosomal protein S18 OS=Branchiostoma belcheri OX=7741 GN=RPS18 PE=2 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 5.1e-65
Identity = 117/152 (76.97%), Postives = 140/152 (92.11%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 60
           MSLV  E FQHILRV+NTN+DG++KIMFALTSIKG+GRR +N+VCKKAD+D++KRAGEL+
Sbjct: 1   MSLVIPEKFQHILRVMNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
             E++ L+ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N+LD KLR+DLERLKKIR H
Sbjct: 61  DEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152

[Close]

BLAST of Csor.00g035680 vs. ExPASy Swiss-Prot
Match: Q8IT98 (40S ribosomal protein S18 OS=Argopecten irradians OX=31199 GN=RPS18 PE=2 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 4.3e-64
Identity = 115/152 (75.66%), Postives = 140/152 (92.11%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 60
           M+L+  E FQHILRV+NTN+DGK+KIMFA+T+IKG+GRR AN+VCKKADVD+ KRAGEL+
Sbjct: 1   MALIIPEKFQHILRVMNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
             E++ ++ +++NPRQ+KIP+WFLNRQKD KDGKYSQV+SNALD KLR+DLERLKKIR H
Sbjct: 61  EDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRG+TVGV+KK+
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGRTVGVAKKK 152

[Close]

BLAST of Csor.00g035680 vs. ExPASy Swiss-Prot
Match: Q8JGS9 (40S ribosomal protein S18 OS=Danio rerio OX=7955 GN=rps18 PE=2 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.3e-62
Identity = 113/152 (74.34%), Postives = 137/152 (90.13%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 60
           MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+NKRAGELT
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
             E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR H
Sbjct: 61  EDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 121 RGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

[Close]

BLAST of Csor.00g035680 vs. ExPASy Swiss-Prot
Match: Q90YQ5 (40S ribosomal protein S18 OS=Ictalurus punctatus OX=7998 GN=rps18 PE=2 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 8.9e-62
Identity = 112/152 (73.68%), Postives = 137/152 (90.13%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 60
           MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D++KRAGELT
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
             E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR H
Sbjct: 61  EDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 121 RGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

[Close]

BLAST of Csor.00g035680 vs. NCBI nr
Match: XP_022935851.1 (40S ribosomal protein S18-like [Cucurbita moschata] >XP_022939915.1 40S ribosomal protein S18-like [Cucurbita moschata] >XP_022976325.1 40S ribosomal protein S18-like [Cucurbita maxima] >XP_022990478.1 40S ribosomal protein S18-like [Cucurbita maxima] >XP_022993309.1 40S ribosomal protein S18-like [Cucurbita maxima] >XP_023535479.1 40S ribosomal protein S18-like [Cucurbita pepo subsp. pepo] >XP_023536458.1 40S ribosomal protein S18-like [Cucurbita pepo subsp. pepo] >XP_023551674.1 40S ribosomal protein S18-like [Cucurbita pepo subsp. pepo] >KAG6592204.1 40S ribosomal protein S18, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016402.1 40S ribosomal protein S18 [Cucurbita argyrosperma subsp. argyrosperma] >KAG7025061.1 40S ribosomal protein S18 [Cucurbita argyrosperma subsp. argyrosperma] >KAG7032879.1 40S ribosomal protein S18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 303 bits (777), Expect = 6.36e-104
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Csor.00g035680 vs. NCBI nr
Match: XP_022956233.1 (40S ribosomal protein S18-like [Cucurbita moschata])

HSP 1 Score: 303 bits (777), Expect = 1.56e-103
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT
Sbjct: 27  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 86

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 87  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 146

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 147 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 178

[Close]

BLAST of Csor.00g035680 vs. NCBI nr
Match: XP_022926292.1 (40S ribosomal protein S18 [Cucurbita moschata] >XP_022981641.1 40S ribosomal protein S18 [Cucurbita maxima] >XP_023523328.1 40S ribosomal protein S18 [Cucurbita pepo subsp. pepo] >KAG6607633.1 40S ribosomal protein S18, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037236.1 40S ribosomal protein S18 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 301 bits (771), Expect = 5.23e-103
Identity = 149/152 (98.03%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLAN+VCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMV+VANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Csor.00g035680 vs. NCBI nr
Match: XP_004139687.1 (40S ribosomal protein S18 [Cucumis sativus] >XP_004140957.2 40S ribosomal protein S18 [Cucumis sativus] >XP_008456747.1 PREDICTED: 40S ribosomal protein S18 [Cucumis melo] >XP_008461916.1 PREDICTED: 40S ribosomal protein S18 [Cucumis melo] >XP_038884290.1 40S ribosomal protein S18 [Benincasa hispida] >XP_038896640.1 40S ribosomal protein S18 [Benincasa hispida] >KGN44457.1 hypothetical protein Csa_016630 [Cucumis sativus])

HSP 1 Score: 300 bits (769), Expect = 1.06e-102
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRR AN+VCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Csor.00g035680 vs. NCBI nr
Match: XP_006434520.1 (40S ribosomal protein S18 [Citrus clementina] >XP_006473109.1 40S ribosomal protein S18 [Citrus sinensis] >ESR47760.1 hypothetical protein CICLE_v10002764mg [Citrus clementina] >KDO83807.1 hypothetical protein CISIN_1g031787mg [Citrus sinensis])

HSP 1 Score: 300 bits (769), Expect = 1.06e-102
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLAN+VCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Csor.00g035680 vs. ExPASy TrEMBL
Match: A0A6J1IJ52 (40S ribosomal protein S18-like OS=Cucurbita maxima OX=3661 GN=LOC111476758 PE=3 SV=1)

HSP 1 Score: 303 bits (777), Expect = 3.08e-104
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Csor.00g035680 vs. ExPASy TrEMBL
Match: A0A6J1FP38 (40S ribosomal protein S18-like OS=Cucurbita moschata OX=3662 GN=LOC111445638 PE=3 SV=1)

HSP 1 Score: 303 bits (777), Expect = 3.08e-104
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Csor.00g035680 vs. ExPASy TrEMBL
Match: A0A6J1GW85 (40S ribosomal protein S18-like OS=Cucurbita moschata OX=3662 GN=LOC111457987 PE=3 SV=1)

HSP 1 Score: 303 bits (777), Expect = 7.57e-104
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT
Sbjct: 27  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 86

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 87  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 146

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 147 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 178

[Close]

BLAST of Csor.00g035680 vs. ExPASy TrEMBL
Match: A0A6J1IX44 (40S ribosomal protein S18 OS=Cucurbita maxima OX=3661 GN=LOC111480700 PE=3 SV=1)

HSP 1 Score: 301 bits (771), Expect = 2.53e-103
Identity = 149/152 (98.03%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLAN+VCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMV+VANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Csor.00g035680 vs. ExPASy TrEMBL
Match: A0A6J1EE49 (40S ribosomal protein S18 OS=Cucurbita moschata OX=3662 GN=LOC111433472 PE=3 SV=1)

HSP 1 Score: 301 bits (771), Expect = 2.53e-103
Identity = 149/152 (98.03%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLAN+VCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMV+VANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Csor.00g035680 vs. TAIR 10
Match: AT1G22780.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 295.8 bits (756), Expect = 2.0e-80
Identity = 146/152 (96.05%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLAN+VCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Csor.00g035680 vs. TAIR 10
Match: AT1G34030.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 295.8 bits (756), Expect = 2.0e-80
Identity = 146/152 (96.05%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLAN+VCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Csor.00g035680 vs. TAIR 10
Match: AT4G09800.1 (S18 ribosomal protein )

HSP 1 Score: 295.8 bits (756), Expect = 2.0e-80
Identity = 146/152 (96.05%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLAN+VCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

The following BLAST results are available for this feature:

BLAST of Csor.00g035680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P34788	2.8e-79	96.05	40S ribosomal protein S18 OS=Arabidopsis thaliana OX=3702 GN=RPS18A PE=1 SV=1	[more]
Q8ISP0	5.1e-65	76.97	40S ribosomal protein S18 OS=Branchiostoma belcheri OX=7741 GN=RPS18 PE=2 SV=1	[more]
Q8IT98	4.3e-64	75.66	40S ribosomal protein S18 OS=Argopecten irradians OX=31199 GN=RPS18 PE=2 SV=1	[more]
Q8JGS9	2.3e-62	74.34	40S ribosomal protein S18 OS=Danio rerio OX=7955 GN=rps18 PE=2 SV=1	[more]
Q90YQ5	8.9e-62	73.68	40S ribosomal protein S18 OS=Ictalurus punctatus OX=7998 GN=rps18 PE=2 SV=1	[more]

BLAST of Csor.00g035680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935851.1	6.36e-104	100.00	40S ribosomal protein S18-like [Cucurbita moschata] >XP_022939915.1 40S ribosoma...	[more]
XP_022956233.1	1.56e-103	100.00	40S ribosomal protein S18-like [Cucurbita moschata]	[more]
XP_022926292.1	5.23e-103	98.03	40S ribosomal protein S18 [Cucurbita moschata] >XP_022981641.1 40S ribosomal pro...	[more]
XP_004139687.1	1.06e-102	98.68	40S ribosomal protein S18 [Cucumis sativus] >XP_004140957.2 40S ribosomal protei...	[more]
XP_006434520.1	1.06e-102	98.68	40S ribosomal protein S18 [Citrus clementina] >XP_006473109.1 40S ribosomal prot...	[more]

BLAST of Csor.00g035680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IJ52	3.08e-104	100.00	40S ribosomal protein S18-like OS=Cucurbita maxima OX=3661 GN=LOC111476758 PE=3 ...	[more]
A0A6J1FP38	3.08e-104	100.00	40S ribosomal protein S18-like OS=Cucurbita moschata OX=3662 GN=LOC111445638 PE=...	[more]
A0A6J1GW85	7.57e-104	100.00	40S ribosomal protein S18-like OS=Cucurbita moschata OX=3662 GN=LOC111457987 PE=...	[more]
A0A6J1IX44	2.53e-103	98.03	40S ribosomal protein S18 OS=Cucurbita maxima OX=3661 GN=LOC111480700 PE=3 SV=1	[more]
A0A6J1EE49	2.53e-103	98.03	40S ribosomal protein S18 OS=Cucurbita moschata OX=3662 GN=LOC111433472 PE=3 SV=...	[more]

BLAST of Csor.00g035680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22780.1	2.0e-80	96.05	Ribosomal protein S13/S18 family	[more]
AT1G34030.1	2.0e-80	96.05	Ribosomal protein S13/S18 family	[more]
AT4G09800.1	2.0e-80	96.05	S18 ribosomal protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001892	Ribosomal protein S13	PIRSF	PIRSF002134	RPS13p_RPS13a_RPS18e_RPS13o	coord: 4..152 e-value: 2.1E-40 score: 135.0
IPR001892	Ribosomal protein S13	PFAM	PF00416	Ribosomal_S13	coord: 14..142 e-value: 6.3E-57 score: 191.5
IPR001892	Ribosomal protein S13	HAMAP	MF_01315	Ribosomal_S13_S18	coord: 12..152 score: 22.830013
IPR001892	Ribosomal protein S13	PROSITE	PS50159	RIBOSOMAL_S13_2	coord: 15..145 score: 34.900524
IPR027437	30s ribosomal protein S13, C-terminal	GENE3D	4.10.910.10	30s ribosomal protein s13, domain 2	coord: 92..142 e-value: 1.4E-28 score: 100.4
None	No IPR available	GENE3D	1.10.8.50		coord: 1..80 e-value: 3.1E-35 score: 122.3
None	No IPR available	PANTHER	PTHR10871	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	coord: 1..152
None	No IPR available	PANTHER	PTHR10871:SF3	40S RIBOSOMAL PROTEIN S18-RELATED	coord: 1..152
IPR018269	Ribosomal protein S13, conserved site	PROSITE	PS00646	RIBOSOMAL_S13_1	coord: 121..134
IPR010979	Ribosomal protein S13-like, H2TH	SUPERFAMILY	46946	S13-like H2TH domain	coord: 13..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g035680.m01	Csor.00g035680.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003676	nucleic acid binding