Csor.00g035330 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g035330
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr14: 12594921 .. 12596334 (-)
RNA-Seq ExpressionCsor.00g035330
SyntenyCsor.00g035330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCAGCTGATGTTCTCTGTGAGTTACTGTGCAAATCTCTCTCTCTAGTCTACACATACTTAGGCGACACAAATGCTTTCCCAAGTACACAGTATGCTATCCTCGATTCAATTTGTAATGTTACCAACTGTTTGTACACGTAGTTTTACATGTGCTCTTATTCAATATCGTATTTTTGAAATCAACTTAATTTTCAATATTTGCTCCTAGATTCATTTGTAGGGCTTCTGTTATGCTTGGATTACAGCAAAAAAAATCTCATAAAAGTGACATCTGACGTTATAGTTTTGTTGATGAAGTGCAATCTTCCAGTGGATTTTATCAATGTTTTATTGGGATATCATTCAGCATGTGTTTTTTGTTATAGCTTTATTCTTGTCAGATGGTGCATTCTTTGTTCTTATCCTGTTTATGATATCACAGAGATGTCGCAACTGTGTTATAACTTTCTACATTCGAATCATCTTTCGTCATTCCAGCATCGGTGCTTTCAAACGCAAGGGCAATAGGAATAAGGGCAAAATCTTTCCTGTTGGATATTTTTGAATGCTGCGTAGGTAATTTCAAATTTTCTGTCATCATTTCTGAATATCATTTCCAAGCATATTTAACGATAACCATTCATTAGGTAGAATTAAAACATCACTCAGAAGTCATTAGATTAGATTTTGTTACCTATTCAGATATAGCTGCTGAATTCTTGTAGTTTGAAGCATTTGTGCTTATCTTCCTCTTACCATTGCTTGAATTCATGCTCTGTTGGATAATCAGGGTAACTTGACACTCACACGAAGTTTTATTATGATACTTCTATCTAGTATATGGACAAGAAACTTAATCTGAAAAAAGCTAAGGATAAAAGTAGATGGTTAGAGATAATGTGAAATACATGTATATGCACTGCGTCTCCGCTGTTATGTTGATTATAAATCTGGTGCCCTTTTACCTCTAGAAAGCCAATGGCAGATTAATGATTTCTGAAGCTTCCTGTGTGTCCAAATCCACCGTCTTCCGCCATTCGGATTAGGTGGAGAGAGAGTAGAATAAAAATTGCATGATGCAACTTACAGATGGTAGCATGTCGGTGCACTTTTCCTTTCGATGAGCTATCACTAATGTCCATGGACACTAGGGGAGGTTCATTCTCTCTGATGTGTTGGTTGCACGAGGTTTCTTCAGGTGAGGCTGTATTCGAGTATTCGAACAATGAACTTGATTCCACCTCTTATTTTTCCCTGATCAAGTTATGTTACTGGCAGAAGTTCATGAGCTAATATTTGATGCAAAACTCAGGAGGCGAAAACTTTTAGTTAGCGTGCATCTCGACTGGTGGTTAGTTGAGATCTTGAGTGTTGACTTAAATGGAGATGAAGAACATGCAGGAGCAGTGGCTGCCTGTGCTTTAACTTGA

mRNA sequence

ATGGACCAGCTGATGTTCTCTAGATGTCGCAACTGTGTTATAACTTTCTACATTCGAATCATCTTTCGTCATTCCAGCATCGGTGCTTTCAAACGCAAGGGCAATAGGAATAAGGGCAAAATCTTTCCTGGGAGGTTCATTCTCTCTGATGTGTTGGTTGCACGAGGTTTCTTCAGGAGGCGAAAACTTTTAGTTAGCGTGCATCTCGACTGGTGGTTAGTTGAGATCTTGAGTGTTGACTTAAATGGAGATGAAGAACATGCAGGAGCAGTGGCTGCCTGTGCTTTAACTTGA

Coding sequence (CDS)

ATGGACCAGCTGATGTTCTCTAGATGTCGCAACTGTGTTATAACTTTCTACATTCGAATCATCTTTCGTCATTCCAGCATCGGTGCTTTCAAACGCAAGGGCAATAGGAATAAGGGCAAAATCTTTCCTGGGAGGTTCATTCTCTCTGATGTGTTGGTTGCACGAGGTTTCTTCAGGAGGCGAAAACTTTTAGTTAGCGTGCATCTCGACTGGTGGTTAGTTGAGATCTTGAGTGTTGACTTAAATGGAGATGAAGAACATGCAGGAGCAGTGGCTGCCTGTGCTTTAACTTGA

Protein sequence

MDQLMFSRCRNCVITFYIRIIFRHSSIGAFKRKGNRNKGKIFPGRFILSDVLVARGFFRRRKLLVSVHLDWWLVEILSVDLNGDEEHAGAVAACALT
Homology
[Close]
BLAST of Csor.00g035330 vs. NCBI nr
Match: KAG6581919.1 (hypothetical protein SDJN03_21921, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201 bits (511), Expect = 4.02e-65
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MDQLMFSRCRNCVITFYIRIIFRHSSIGAFKRKGNRNKGKIFPGRFILSDVLVARGFFRR 60
          MDQLMFSRCRNCVITFYIRIIFRHSSIGAFKRKGNRNKGKIFPGRFILSDVLVARGFFRR
Sbjct: 1  MDQLMFSRCRNCVITFYIRIIFRHSSIGAFKRKGNRNKGKIFPGRFILSDVLVARGFFRR 60

Query: 61 RKLLVSVHLDWWLVEILSVDLNGDEEHAGAVAACALT 97
          RKLLVSVHLDWWLVEILSVDLNGDEEHAGAVAACALT
Sbjct: 61 RKLLVSVHLDWWLVEILSVDLNGDEEHAGAVAACALT 97

[Close]
BLAST of Csor.00g035330 vs. NCBI nr
Match: KAG7018352.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.8 bits (203), Expect = 5.86e-16
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0 

Query: 59  RRRKLLVSVHLDWWLVEILSVDLNGDEEHAGAVAACALT 97
           RRRKLLVSVHLDWWLVEILSVDLNGDEEHAGAVAACALT
Sbjct: 454 RRRKLLVSVHLDWWLVEILSVDLNGDEEHAGAVAACALT 492

The following BLAST results are available for this feature:
BLAST of Csor.00g035330 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g035330 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6581919.14.02e-65100.00hypothetical protein SDJN03_21921, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7018352.15.86e-16100.00Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
BLAST of Csor.00g035330 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g035330 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g035330.m01Csor.00g035330.m01mRNA