Csor.00g034970 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g034970
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr14: 12387481 .. 12389524 (-)
RNA-Seq ExpressionCsor.00g034970
SyntenyCsor.00g034970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGCCGATGGACAATATGGGCTTTGTTACCTCTCCAAGTCAAAGCCCATATTCGACCTTCAACGCTTTGCTCATCGAATTTATGTACCACCGTCTCGGAAATCAGAAGCGCCATTGAAGACGAGCAGGAACTTGGAACTGAATTTCTGTACCTTCTTCTTCCGTCCTTCGCATCCACCAAGTAGATACCCTTCCAATTGGCTCTACAATCCGCGTGCTATCGAAGGTTGTTTTCATTTCCATTCACATTATTTTTTAATCAACGTTTTCTTTGTTGAATTAATGTGTGTTTTCCGGGGAACTTTCTGCAATTTATGGTTTGCCCGTGATCAAGTGGTTTTTTGTTTTTTCGTGATCGTCTTATTGATTTTGGCTGGTTTAATTGGCTGATTTGTCGCCATTCGTTTGTATGATCCTAAAAATTGAAACTAGGGCTTCGGGTTATAATTGGATCTGATCTGGTCATTATGATGATGAATGTTAGGTTCCTGAATTTCTCTTTCGGTTTGCTTAGGTGTGTTTCCACCTGTGAGGGGTTTGTTGATTAAATTTGTTATAGTTTAAGCCTGTGATTTAACATCCTTGTGTTTTAGTTTTATCGATGGATTACTTCAAAGAGTGAGGAGAGATTCTTGTTTACTATCGGAAGTCACATTTTATGTTTGTTTTGTTCACAATTAGTTTGTCCTCACCGTTTATTAGTTAACCCTTAATTTACTTCTATTTGTATTTAAATGGAACATGATGACAACAATTCCAAAGTATTCTTTAGTGGGAATTTTGCCTTCCGAAGAAACTAAGTTCTACAATTATCCTTGGACTTCCAAATAAAAATTCCTTCGGTACCTTGGTTGTGGCATGCTGAACATTTTCCTCAAAATTCAGAAGTGATACCTGAACGCTCTCATTGGTGTTTTTTTGAGTGGGGAAGTTGTGGAAATCTCTGAACACTTTTTCTTTAAGGGCCACTTTCTAGCAGAATATGGTCGTTGATGTTTTGAAGTTCTTATATTAGGTGGTCTAGCACTCAGAAACATCCTAGCTTTTCTTTTGTAGCTCTTGATTAGCCCCTGTGTTTTGTTGGTAAAAGCTTAGATTTCGTTGCCAAAGGTAACTAACTTGGACAACTTGTTGGGACAAGTAGCTATAAAGGGGTTGCAATCTGAAGTGGCTCTTGCAGGGATCAATCTAGTTTGTCTTCCCTTCTTGATTATTATACATTTTCTATTTCTATTATGTTAGTTCTTATCTTAAAAAGGATGAGTTGTGTGGAATTGTGCACGCGCTGTTTCCGTTTTTTATTAGTTTTGTGTTTTCTAATTCTAATATGTTTTTTGTTATCCAAAAAAGAAGATGAAAAGAAGAAGAGTTTTGTTATATTGTGCATGCCCTGTTTTCCTTCTTTGTGTTATACTCTTTCTATTGATAATATGCTTTCACTTATTCAAGAGAGAAAGAGAGAGATTGGTGGAATTGTGTTTGCTCTGTTTCGTCCTTGATTAACACATTTACTATTTCTAATATTGTTATTTCTCATCCGACAAAAGAAGTTTTGTGGAGTTTTGCTTGCTATATTTTTTAGTTTTAGTATGCTATTACGTCCACTTTTTGGGCAGTTCAACTTGTTAGTAAGGAGTAACGCACCCTTTTATAGCAGTCAGCTATGACATCCTGTTACTTGTAGGGTTTTGATCCATTTTCTTTGAAGCTGTATTTCTAAAGCTGGTGCGAGACATTTCTTTTCAATTATACCATTTACAATGTTCTATTCCTGGCTAAAAGTATGAGACATGGAAATCAAACGTAGGAAGGATATAAAAAAAAAAAAAAGGCCATATGAGAAGACTTTTCTTACTGACATTGAATTGTCATAGCCCATAGCTTAAGACTAAATTGATGTGTAGAGAGAGAGAGACATCTAAGTTTAGAAGTTCCCCTATAATGTCTATGAAAAATATCTTCTTCTAAGATATGATTTTCTACAGGGATCAACTACGAGGAAAATCAAGTACCAATTCCAGTTCCTATTATTCACCGTTGA

mRNA sequence

ATGTGGGCCGATGGACAATATGGGCTTTGTTACCTCTCCAAGTCAAAGCCCATATTCGACCTTCAACGCTTTGCTCATCGAATTTATGTACCACCGTCTCGGAAATCAGAAGCGCCATTGAAGACGAGCAGGAACTTGGAACTGAATTTCTGTACCTTCTTCTTCCGTCCTTCGCATCCACCAAGTAGATACCCTTCCAATTGGCTCTACAATCCGCGTGCTATCGAAGGGATCAACTACGAGGAAAATCAAGTACCAATTCCAGTTCCTATTATTCACCGTTGA

Coding sequence (CDS)

ATGTGGGCCGATGGACAATATGGGCTTTGTTACCTCTCCAAGTCAAAGCCCATATTCGACCTTCAACGCTTTGCTCATCGAATTTATGTACCACCGTCTCGGAAATCAGAAGCGCCATTGAAGACGAGCAGGAACTTGGAACTGAATTTCTGTACCTTCTTCTTCCGTCCTTCGCATCCACCAAGTAGATACCCTTCCAATTGGCTCTACAATCCGCGTGCTATCGAAGGGATCAACTACGAGGAAAATCAAGTACCAATTCCAGTTCCTATTATTCACCGTTGA

Protein sequence

MWADGQYGLCYLSKSKPIFDLQRFAHRIYVPPSRKSEAPLKTSRNLELNFCTFFFRPSHPPSRYPSNWLYNPRAIEGINYEENQVPIPVPIIHR
Homology
[Close]
BLAST of Csor.00g034970 vs. NCBI nr
Match: KAG6581883.1 (hypothetical protein SDJN03_21885, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 207 bits (527), Expect = 1.17e-67
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MWADGQYGLCYLSKSKPIFDLQRFAHRIYVPPSRKSEAPLKTSRNLELNFCTFFFRPSHP 60
          MWADGQYGLCYLSKSKPIFDLQRFAHRIYVPPSRKSEAPLKTSRNLELNFCTFFFRPSHP
Sbjct: 1  MWADGQYGLCYLSKSKPIFDLQRFAHRIYVPPSRKSEAPLKTSRNLELNFCTFFFRPSHP 60

Query: 61 PSRYPSNWLYNPRAIEGINYEENQVPIPVPIIHR 94
          PSRYPSNWLYNPRAIEGINYEENQVPIPVPIIHR
Sbjct: 61 PSRYPSNWLYNPRAIEGINYEENQVPIPVPIIHR 94

[Close]
BLAST of Csor.00g034970 vs. NCBI nr
Match: KAG7018318.1 (Protein transport protein SEC13-like B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186 bits (472), Expect = 1.67e-55
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MWADGQYGLCYLSKSKPIFDLQRFAHRIYVPPSRKSEAPLKTSRNLELNFCTFFFRPSHP 60
          MWADGQYGLCYLSKSKPIFDLQRFAHRIYVPPSRKSEAPLKTSRNLELNFCTFFFRPSHP
Sbjct: 1  MWADGQYGLCYLSKSKPIFDLQRFAHRIYVPPSRKSEAPLKTSRNLELNFCTFFFRPSHP 60

Query: 61 PSRYPSNWLYNPRAIEGINYEENQ 84
          PSRYPSNWLYNPRAIEGINYEENQ
Sbjct: 61 PSRYPSNWLYNPRAIEGINYEENQ 84

The following BLAST results are available for this feature:
BLAST of Csor.00g034970 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g034970 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6581883.11.17e-67100.00hypothetical protein SDJN03_21885, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7018318.11.67e-55100.00Protein transport protein SEC13-like B, partial [Cucurbita argyrosperma subsp. a... [more]
BLAST of Csor.00g034970 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g034970 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g034970.m01Csor.00g034970.m01mRNA