Csor.00g034470 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g034470
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr20: 7264388 .. 7264642 (-)
RNA-Seq Expression	Csor.00g034470
Synteny	Csor.00g034470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGACAATCCGACACTGGACAACAGGAACTCTGCAGCCTATTTTACTCACATGCATCTACAGCTACCAGCTACCTCAATTTTAATACTTGCCTTGCACGAATTGCTGATGACTGTCTGCTTTAAGGCTAAGGAACACTTGCTACAGCGCGGTAACTACTTTGCTAGGCGGTTTGCTCGAAACCAATCCTGTCGTCCACGCAACGCGAACCAAGCAAAGGCAGCCAGGCAACGTGCTGGCAGGACTGCCTGA

mRNA sequence

ATGAAGGACAATCCGACACTGGACAACAGGAACTCTGCAGCCTATTTTACTCACATGCATCTACAGCTACCAGCTACCTCAATTTTAATACTTGCCTTGCACGAATTGCTGATGACTGTCTGCTTTAAGGCTAAGGAACACTTGCTACAGCGCGGTAACTACTTTGCTAGGCGGTTTGCTCGAAACCAATCCTGTCGTCCACGCAACGCGAACCAAGCAAAGGCAGCCAGGCAACGTGCTGGCAGGACTGCCTGA

Coding sequence (CDS)

ATGAAGGACAATCCGACACTGGACAACAGGAACTCTGCAGCCTATTTTACTCACATGCATCTACAGCTACCAGCTACCTCAATTTTAATACTTGCCTTGCACGAATTGCTGATGACTGTCTGCTTTAAGGCTAAGGAACACTTGCTACAGCGCGGTAACTACTTTGCTAGGCGGTTTGCTCGAAACCAATCCTGTCGTCCACGCAACGCGAACCAAGCAAAGGCAGCCAGGCAACGTGCTGGCAGGACTGCCTGA

Protein sequence

MKDNPTLDNRNSAAYFTHMHLQLPATSILILALHELLMTVCFKAKEHLLQRGNYFARRFARNQSCRPRNANQAKAARQRAGRTA

Homology

[Close]

BLAST of Csor.00g034470 vs. NCBI nr
Match: KAG6571265.1 (hypothetical protein SDJN03_30180, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162 bits (411), Expect = 2.86e-50
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MKDNPTLDNRNSAAYFTHMHLQLPATSILILALHELLMTVCFKAKEHLLQRGNYFARRFA 60
          MKDNPTLDNRNSAAYFTHMHLQLPATSILILALHELLMTVCFKAKEHLLQRGNYFARRFA
Sbjct: 1  MKDNPTLDNRNSAAYFTHMHLQLPATSILILALHELLMTVCFKAKEHLLQRGNYFARRFA 60

Query: 61 RNQSCRPRNANQAKAARQRAGRTA 84
          RNQSCRPRNANQAKAARQRAGRTA
Sbjct: 61 RNQSCRPRNANQAKAARQRAGRTA 84

[Close]

BLAST of Csor.00g034470 vs. NCBI nr
Match: MBA0619866.1 (hypothetical protein [Gossypium davidsonii])

HSP 1 Score: 48.5 bits (114), Expect = 4.44e-04
Identity = 39/78 (50.00%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 1   MKDNPTLDNRNSAAYFTHMHLQLPATSILILALHELLMTVCFKAKEHLLQRGNYFARRFA 60
           MKDNP +  +  AAYFTH +LQLP   + +L      MTVC+KAK  L   GN FARR  
Sbjct: 930 MKDNP-VRQQELAAYFTHCNLQLPHLRLALLNA----MTVCYKAKN-LATAGN-FARRLL 989

Query: 61  RNQSCRPRNANQAKAARQ 78
                 P N NQAK ARQ
Sbjct: 990 ETN---PTNENQAKTARQ 997

[Close]

BLAST of Csor.00g034470 vs. NCBI nr
Match: MBA0717038.1 (hypothetical protein [Gossypium laxum])

HSP 1 Score: 48.5 bits (114), Expect = 4.45e-04
Identity = 39/78 (50.00%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 1    MKDNPTLDNRNSAAYFTHMHLQLPATSILILALHELLMTVCFKAKEHLLQRGNYFARRFA 60
            MKDNP +  +  AAYFTH +LQLP   + +L      MTVC+KAK  L   GN FARR  
Sbjct: 1004 MKDNP-VRQQELAAYFTHCNLQLPHLRLALLNA----MTVCYKAKN-LATAGN-FARRLL 1063

Query: 61   RNQSCRPRNANQAKAARQ 78
                  P N NQAK ARQ
Sbjct: 1064 ETN---PTNENQAKTARQ 1071

[Close]

BLAST of Csor.00g034470 vs. NCBI nr
Match: PPE02726.1 (hypothetical protein GOBAR_DD00285 [Gossypium barbadense])

HSP 1 Score: 48.5 bits (114), Expect = 4.45e-04
Identity = 39/78 (50.00%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 1    MKDNPTLDNRNSAAYFTHMHLQLPATSILILALHELLMTVCFKAKEHLLQRGNYFARRFA 60
            MKDNP +  +  AAYFTH +LQLP   + +L      MTVC+KAK  L   GN FARR  
Sbjct: 1029 MKDNP-VRQQELAAYFTHCNLQLPHLRLALLNA----MTVCYKAKN-LATAGN-FARRLL 1088

Query: 61   RNQSCRPRNANQAKAARQ 78
                  P N NQAK ARQ
Sbjct: 1089 ETN---PTNENQAKTARQ 1096

[Close]

BLAST of Csor.00g034470 vs. NCBI nr
Match: MBA0743089.1 (hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 48.5 bits (114), Expect = 4.45e-04
Identity = 39/78 (50.00%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 1    MKDNPTLDNRNSAAYFTHMHLQLPATSILILALHELLMTVCFKAKEHLLQRGNYFARRFA 60
            MKDNP +  +  AAYFTH +LQLP   + +L      MTVC+KAK  L   GN FARR  
Sbjct: 1068 MKDNP-VRQQELAAYFTHCNLQLPHLRLALLNA----MTVCYKAKN-LATAGN-FARRLL 1127

Query: 61   RNQSCRPRNANQAKAARQ 78
                  P N NQAK ARQ
Sbjct: 1128 ETN---PTNENQAKTARQ 1135

[Close]

BLAST of Csor.00g034470 vs. ExPASy TrEMBL
Match: A0A7J8S2P6 (WD_REPEATS_REGION domain-containing protein OS=Gossypium davidsonii OX=34287 GN=Godav_005661 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.15e-04
Identity = 39/78 (50.00%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 1   MKDNPTLDNRNSAAYFTHMHLQLPATSILILALHELLMTVCFKAKEHLLQRGNYFARRFA 60
           MKDNP +  +  AAYFTH +LQLP   + +L      MTVC+KAK  L   GN FARR  
Sbjct: 930 MKDNP-VRQQELAAYFTHCNLQLPHLRLALLNA----MTVCYKAKN-LATAGN-FARRLL 989

Query: 61  RNQSCRPRNANQAKAARQ 78
                 P N NQAK ARQ
Sbjct: 990 ETN---PTNENQAKTARQ 997

[Close]

BLAST of Csor.00g034470 vs. ExPASy TrEMBL
Match: A0A7J8ZYZ1 (WD_REPEATS_REGION domain-containing protein (Fragment) OS=Gossypium laxum OX=34288 GN=Golax_004882 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.15e-04
Identity = 39/78 (50.00%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 1    MKDNPTLDNRNSAAYFTHMHLQLPATSILILALHELLMTVCFKAKEHLLQRGNYFARRFA 60
            MKDNP +  +  AAYFTH +LQLP   + +L      MTVC+KAK  L   GN FARR  
Sbjct: 1004 MKDNP-VRQQELAAYFTHCNLQLPHLRLALLNA----MTVCYKAKN-LATAGN-FARRLL 1063

Query: 61   RNQSCRPRNANQAKAARQ 78
                  P N NQAK ARQ
Sbjct: 1064 ETN---PTNENQAKTARQ 1071

[Close]

BLAST of Csor.00g034470 vs. ExPASy TrEMBL
Match: A0A7J9C3R4 (Coatomer subunit alpha OS=Gossypium gossypioides OX=34282 GN=Gogos_005808 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.16e-04
Identity = 39/78 (50.00%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 1    MKDNPTLDNRNSAAYFTHMHLQLPATSILILALHELLMTVCFKAKEHLLQRGNYFARRFA 60
            MKDNP +  +  AAYFTH +LQLP   + +L      MTVC+KAK  L   GN FARR  
Sbjct: 1068 MKDNP-VRQQELAAYFTHCNLQLPHLRLALLNA----MTVCYKAKN-LATAGN-FARRLL 1127

Query: 61   RNQSCRPRNANQAKAARQ 78
                  P N NQAK ARQ
Sbjct: 1128 ETN---PTNENQAKTARQ 1135

[Close]

BLAST of Csor.00g034470 vs. ExPASy TrEMBL
Match: A0A7J9A0G5 (Coatomer subunit alpha OS=Gossypium laxum OX=34288 GN=Golax_004882 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.16e-04
Identity = 39/78 (50.00%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 1    MKDNPTLDNRNSAAYFTHMHLQLPATSILILALHELLMTVCFKAKEHLLQRGNYFARRFA 60
            MKDNP +  +  AAYFTH +LQLP   + +L      MTVC+KAK  L   GN FARR  
Sbjct: 1068 MKDNP-VRQQELAAYFTHCNLQLPHLRLALLNA----MTVCYKAKN-LATAGN-FARRLL 1127

Query: 61   RNQSCRPRNANQAKAARQ 78
                  P N NQAK ARQ
Sbjct: 1128 ETN---PTNENQAKTARQ 1135

[Close]

BLAST of Csor.00g034470 vs. ExPASy TrEMBL
Match: A0A5D2A837 (Coatomer subunit alpha OS=Gossypium darwinii OX=34276 GN=ES288_D12G033500v1 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.16e-04
Identity = 39/78 (50.00%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 1    MKDNPTLDNRNSAAYFTHMHLQLPATSILILALHELLMTVCFKAKEHLLQRGNYFARRFA 60
            MKDNP +  +  AAYFTH +LQLP   + +L      MTVC+KAK  L   GN FARR  
Sbjct: 1068 MKDNP-VRQQELAAYFTHCNLQLPHLRLALLNA----MTVCYKAKN-LATAGN-FARRLL 1127

Query: 61   RNQSCRPRNANQAKAARQ 78
                  P N NQAK ARQ
Sbjct: 1128 ETN---PTNENQAKTARQ 1135

The following BLAST results are available for this feature:

BLAST of Csor.00g034470 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g034470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571265.1	2.86e-50	100.00	hypothetical protein SDJN03_30180, partial [Cucurbita argyrosperma subsp. sorori...	[more]
MBA0619866.1	4.44e-04	50.00	hypothetical protein [Gossypium davidsonii]	[more]
MBA0717038.1	4.45e-04	50.00	hypothetical protein [Gossypium laxum]	[more]
PPE02726.1	4.45e-04	50.00	hypothetical protein GOBAR_DD00285 [Gossypium barbadense]	[more]
MBA0743089.1	4.45e-04	50.00	hypothetical protein [Gossypium gossypioides]	[more]

BLAST of Csor.00g034470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J8S2P6	2.15e-04	50.00	WD_REPEATS_REGION domain-containing protein OS=Gossypium davidsonii OX=34287 GN=...	[more]
A0A7J8ZYZ1	2.15e-04	50.00	WD_REPEATS_REGION domain-containing protein (Fragment) OS=Gossypium laxum OX=342...	[more]
A0A7J9C3R4	2.16e-04	50.00	Coatomer subunit alpha OS=Gossypium gossypioides OX=34282 GN=Gogos_005808 PE=4 S...	[more]
A0A7J9A0G5	2.16e-04	50.00	Coatomer subunit alpha OS=Gossypium laxum OX=34288 GN=Golax_004882 PE=4 SV=1	[more]
A0A5D2A837	2.16e-04	50.00	Coatomer subunit alpha OS=Gossypium darwinii OX=34276 GN=ES288_D12G033500v1 PE=4...	[more]

BLAST of Csor.00g034470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010714	Coatomer, alpha subunit, C-terminal	PFAM	PF06957	COPI_C	coord: 12..79 e-value: 4.5E-5 score: 22.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g034470.m01	Csor.00g034470.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0030126	COPI vesicle coat
molecular_function	GO:0005515	protein binding
molecular_function	GO:0005198	structural molecule activity