Csor.00g034060 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g034060
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionEpidermal patterning factor-like protein
LocationCsor_Chr10: 6654489 .. 6654836 (-)
RNA-Seq ExpressionCsor.00g034060
SyntenyCsor.00g034060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACATAACTCAGGTATAATTTATTTTAGTTCCAATATTATAATGGAGGATTTCATCACCTTTCCTCGTATATTTTCTTACAAATACCTATTTTTGCACCCAAAAAAATTCTAATGCATTATACTATGTCAGCCCATCTCTAATCTTGAAGATCAAAGAGTTGACCTTGTCAAGAAGAGGATTGAGTGGGCTGGGATCGTCGCCACCAAACTGTGACTCAAAGTGTGGGAGCTGCACGCCCTGTACTACGGTTCTTGTGTCGGTGCCGCCAGGACCTTCAGGCGTCGGTGATGATTTCCCGAAAGTCTGGAGATGCAAATGTGGGAACAAGCTCTACATGCCCTGA

mRNA sequence

ATGCACATAACTCAGATCAAAGAGTTGACCTTGTCAAGAAGAGGATTGAGTGGGCTGGGATCGTCGCCACCAAACTGTGACTCAAAGTGTGGGAGCTGCACGCCCTGTACTACGGTTCTTGTGTCGGTGCCGCCAGGACCTTCAGGCGTCGGTGATGATTTCCCGAAAGTCTGGAGATGCAAATGTGGGAACAAGCTCTACATGCCCTGA

Coding sequence (CDS)

ATGCACATAACTCAGATCAAAGAGTTGACCTTGTCAAGAAGAGGATTGAGTGGGCTGGGATCGTCGCCACCAAACTGTGACTCAAAGTGTGGGAGCTGCACGCCCTGTACTACGGTTCTTGTGTCGGTGCCGCCAGGACCTTCAGGCGTCGGTGATGATTTCCCGAAAGTCTGGAGATGCAAATGTGGGAACAAGCTCTACATGCCCTGA

Protein sequence

MHITQIKELTLSRRGLSGLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP
Homology
BLAST of Csor.00g034060 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.8e-17
Identity = 38/57 (66.67%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 13  RRGLSGLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP 70
           RR L GLGSSPP C SKCG CTPC  V V VPPG     + +P+ WRCKCGNKLYMP
Sbjct: 100 RRILRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 156

BLAST of Csor.00g034060 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.0e-13
Identity = 32/58 (55.17%), Postives = 38/58 (65.52%), Query Frame = 0

Query: 12  SRRGLSGLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP 70
           S +   G GSSPP C SKCG C PC  V V + PG S   + +P+ WRCKCGNKL+MP
Sbjct: 52  SNKRFGGPGSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPLEYYPEAWRCKCGNKLFMP 109

BLAST of Csor.00g034060 vs. ExPASy Swiss-Prot
Match: Q9LUH9 (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EPFL5 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-11
Identity = 29/59 (49.15%), Postives = 37/59 (62.71%), Query Frame = 0

Query: 11  LSRRGLSGLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP 70
           + ++ L G GS PP C  KCG C PC  V V + PG     + +P+ WRCKCGNKL+MP
Sbjct: 49  VDQKRLGGPGSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPLEYYPEAWRCKCGNKLFMP 107

BLAST of Csor.00g034060 vs. ExPASy Swiss-Prot
Match: Q8S8I4 (Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=EPF1 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.3e-04
Identity = 19/48 (39.58%), Postives = 25/48 (52.08%), Query Frame = 0

Query: 20  GSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLY 68
           GS  P+C   CGSC+PC  V+VS         +  P  ++C C NK Y
Sbjct: 54  GSRLPDCSHACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSY 101

BLAST of Csor.00g034060 vs. ExPASy Swiss-Prot
Match: P43212 (Polygalacturonase OS=Cryptomeria japonica OX=3369 PE=1 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 6.6e-04
Identity = 21/51 (41.18%), Postives = 27/51 (52.94%), Query Frame = 0

Query: 19  LGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP 70
           LGS PPNC +KC  C+PC   LV V        + +P+ W C    K+Y P
Sbjct: 466 LGSRPPNCTNKCHGCSPCKAKLVIV--HRIMPQEYYPQRWMCSRHGKIYHP 514

BLAST of Csor.00g034060 vs. NCBI nr
Match: KAG6590330.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 153 bits (386), Expect = 6.43e-47
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0

Query: 1  MHITQIKELTLSRRGLSGLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRC 60
          MHITQIKELTLSRRGLSGLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRC
Sbjct: 1  MHITQIKELTLSRRGLSGLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRC 60

Query: 61 KCGNKLYMP 69
          KCGNKLYMP
Sbjct: 61 KCGNKLYMP 69

BLAST of Csor.00g034060 vs. NCBI nr
Match: KAG6583319.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136 bits (343), Expect = 8.92e-40
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0

Query: 7   KELTLSRRGLSGLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKL 66
           +ELTLSRRGLS LGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKL
Sbjct: 52  QELTLSRRGLSRLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKL 111

Query: 67  YMP 69
           YMP
Sbjct: 112 YMP 114

BLAST of Csor.00g034060 vs. NCBI nr
Match: KAG6583317.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG6590332.1 EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 134 bits (336), Expect = 9.79e-39
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0

Query: 7   KELTLSRRGLSGLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKL 66
           +ELTLS RGLS LGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKL
Sbjct: 50  QELTLSGRGLSRLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKL 109

Query: 67  YMP 69
           YMP
Sbjct: 110 YMP 112

BLAST of Csor.00g034060 vs. NCBI nr
Match: KAG6583316.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG6590333.1 EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130 bits (328), Expect = 1.62e-37
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0

Query: 7   KELTLSRRGLSGLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKL 66
           +ELTLS RGLS LGSSPPNCDSKCGSCTPCTTVLVSVP GPSGVGDDFPKVWRCKCGNKL
Sbjct: 50  QELTLSGRGLSRLGSSPPNCDSKCGSCTPCTTVLVSVPSGPSGVGDDFPKVWRCKCGNKL 109

Query: 67  YMP 69
           YMP
Sbjct: 110 YMP 112

BLAST of Csor.00g034060 vs. NCBI nr
Match: KAG6583645.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129 bits (325), Expect = 4.65e-37
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 0

Query: 7   KELTLSRRGLSGLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKL 66
           +ELTL RRGL GLGSSPPNC SKCGSCTPCTT+LVSVPPGP GVGDDFP+VWRCKCGNKL
Sbjct: 50  QELTLPRRGLGGLGSSPPNCTSKCGSCTPCTTILVSVPPGPPGVGDDFPEVWRCKCGNKL 109

Query: 67  YMP 69
           YMP
Sbjct: 110 YMP 112

BLAST of Csor.00g034060 vs. ExPASy TrEMBL
Match: A0A5D3BE35 (Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00580 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.02e-23
Identity = 40/61 (65.57%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 9   LTLSRRGLSGLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYM 68
           + L RRGL G GSSPP C SKCG CTPCT V V VPPG     + +P+ WRCKCGNKLYM
Sbjct: 47  MRLPRRGLGGPGSSPPRCTSKCGKCTPCTAVHVPVPPGTPVTAEYYPEAWRCKCGNKLYM 106

BLAST of Csor.00g034060 vs. ExPASy TrEMBL
Match: A0A498K737 (Epidermal patterning factor-like protein OS=Malus domestica OX=3750 GN=DVH24_038363 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 6.98e-23
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 1   MHITQIKELTLSRRGLSGLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRC 60
           M   ++  L+L+RR LSG GSSPP C SKCG CTPC  V VSVPPG   + + +P+ WRC
Sbjct: 59  MREQRMMPLSLARRYLSGPGSSPPRCTSKCGRCTPCKPVHVSVPPGTPVMAEYYPEAWRC 118

Query: 61  KCGNKLYMP 69
           KCGNKLYMP
Sbjct: 119 KCGNKLYMP 127

BLAST of Csor.00g034060 vs. ExPASy TrEMBL
Match: A0A5N5FVQ0 (Epidermal patterning factor-like protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_006932 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 6.98e-23
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 1   MHITQIKELTLSRRGLSGLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRC 60
           M   ++  L+L+RR LSG GSSPP C SKCG CTPC  V VSVPPG   + + +P+ WRC
Sbjct: 59  MREQRMMTLSLARRYLSGPGSSPPRCTSKCGRCTPCKPVHVSVPPGTPVMAEYYPEAWRC 118

Query: 61  KCGNKLYMP 69
           KCGNKLYMP
Sbjct: 119 KCGNKLYMP 127

BLAST of Csor.00g034060 vs. ExPASy TrEMBL
Match: A0A5N5GSP7 (Epidermal patterning factor-like protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_023260 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 6.98e-23
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 1   MHITQIKELTLSRRGLSGLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRC 60
           M   ++  L+L+RR LSG GSSPP C SKCG CTPC  V VSVPPG   + + +P+ WRC
Sbjct: 59  MREQRMMPLSLARRYLSGPGSSPPRCTSKCGRCTPCKPVHVSVPPGTPVMAEYYPEAWRC 118

Query: 61  KCGNKLYMP 69
           KCGNKLYMP
Sbjct: 119 KCGNKLYMP 127

BLAST of Csor.00g034060 vs. ExPASy TrEMBL
Match: A0A540ME66 (Epidermal patterning factor-like protein OS=Malus baccata OX=106549 GN=C1H46_017345 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 6.98e-23
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 1   MHITQIKELTLSRRGLSGLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRC 60
           M   ++  L+L+RR LSG GSSPP C SKCG CTPC  V VSVPPG   + + +P+ WRC
Sbjct: 59  MREQRMMPLSLARRYLSGPGSSPPRCTSKCGRCTPCKPVHVSVPPGTPVMAEYYPEAWRC 118

Query: 61  KCGNKLYMP 69
           KCGNKLYMP
Sbjct: 119 KCGNKLYMP 127

BLAST of Csor.00g034060 vs. TAIR 10
Match: AT2G30370.1 (allergen-related )

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-18
Identity = 38/57 (66.67%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 13  RRGLSGLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP 70
           RR L GLGSSPP C SKCG CTPC  V V VPPG     + +P+ WRCKCGNKLYMP
Sbjct: 174 RRILRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 230

BLAST of Csor.00g034060 vs. TAIR 10
Match: AT2G30370.2 (allergen-related )

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-18
Identity = 38/57 (66.67%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 13  RRGLSGLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP 70
           RR L GLGSSPP C SKCG CTPC  V V VPPG     + +P+ WRCKCGNKLYMP
Sbjct: 100 RRILRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 156

BLAST of Csor.00g034060 vs. TAIR 10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-14
Identity = 32/58 (55.17%), Postives = 38/58 (65.52%), Query Frame = 0

Query: 12  SRRGLSGLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP 70
           S +   G GSSPP C SKCG C PC  V V + PG S   + +P+ WRCKCGNKL+MP
Sbjct: 52  SNKRFGGPGSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPLEYYPEAWRCKCGNKLFMP 109

BLAST of Csor.00g034060 vs. TAIR 10
Match: AT3G22820.1 (allergen-related )

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-12
Identity = 29/59 (49.15%), Postives = 37/59 (62.71%), Query Frame = 0

Query: 11  LSRRGLSGLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP 70
           + ++ L G GS PP C  KCG C PC  V V + PG     + +P+ WRCKCGNKL+MP
Sbjct: 49  VDQKRLGGPGSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPLEYYPEAWRCKCGNKLFMP 107

BLAST of Csor.00g034060 vs. TAIR 10
Match: AT2G20875.1 (epidermal patterning factor 1 )

HSP 1 Score: 45.8 bits (107), Expect = 1.6e-05
Identity = 19/48 (39.58%), Postives = 25/48 (52.08%), Query Frame = 0

Query: 20  GSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLY 68
           GS  P+C   CGSC+PC  V+VS         +  P  ++C C NK Y
Sbjct: 54  GSRLPDCSHACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSY 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q1PEY61.8e-1766.67EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Q2V3I32.0e-1355.17EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Q9LUH91.9e-1149.15EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Q8S8I42.3e-0439.58Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=EPF1 PE... [more]
P432126.6e-0441.18Polygalacturonase OS=Cryptomeria japonica OX=3369 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
KAG6590330.16.43e-47100.00EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subs... [more]
KAG6583319.18.92e-4096.83EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subs... [more]
KAG6583317.19.79e-3995.24EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subs... [more]
KAG6583316.11.62e-3793.65EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subs... [more]
KAG6583645.14.65e-3788.89EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subs... [more]
Match NameE-valueIdentityDescription
A0A5D3BE354.02e-2365.57Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A498K7376.98e-2360.87Epidermal patterning factor-like protein OS=Malus domestica OX=3750 GN=DVH24_038... [more]
A0A5N5FVQ06.98e-2360.87Epidermal patterning factor-like protein OS=Pyrus ussuriensis x Pyrus communis O... [more]
A0A5N5GSP76.98e-2360.87Epidermal patterning factor-like protein OS=Pyrus ussuriensis x Pyrus communis O... [more]
A0A540ME666.98e-2360.87Epidermal patterning factor-like protein OS=Malus baccata OX=106549 GN=C1H46_017... [more]
Match NameE-valueIdentityDescription
AT2G30370.11.3e-1866.67allergen-related [more]
AT2G30370.21.3e-1866.67allergen-related [more]
AT4G14723.11.4e-1455.17BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1);... [more]
AT3G22820.11.4e-1249.15allergen-related [more]
AT2G20875.11.6e-0539.58epidermal patterning factor 1 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF17181EPFcoord: 19..69
e-value: 2.0E-18
score: 66.1
NoneNo IPR availablePANTHERPTHR33109:SF4EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 6coord: 8..69
IPR039455EPIDERMAL PATTERNING FACTOR-like proteinPANTHERPTHR33109EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4coord: 8..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g034060.m01Csor.00g034060.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010052 guard cell differentiation
biological_process GO:0010374 stomatal complex development
cellular_component GO:0016020 membrane