Csor.00g034060 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCACATAACTCAGGTATAATTTATTTTAGTTCCAATATTATAATGGAGGATTTCATCACCTTTCCTCGTATATTTTCTTACAAATACCTATTTTTGCACCCAAAAAAATTCTAATGCATTATACTATGTCAGCCCATCTCTAATCTTGAAGATCAAAGAGTTGACCTTGTCAAGAAGAGGATTGAGTGGGCTGGGATCGTCGCCACCAAACTGTGACTCAAAGTGTGGGAGCTGCACGCCCTGTACTACGGTTCTTGTGTCGGTGCCGCCAGGACCTTCAGGCGTCGGTGATGATTTCCCGAAAGTCTGGAGATGCAAATGTGGGAACAAGCTCTACATGCCCTGA ATGCACATAACTCAGATCAAAGAGTTGACCTTGTCAAGAAGAGGATTGAGTGGGCTGGGATCGTCGCCACCAAACTGTGACTCAAAGTGTGGGAGCTGCACGCCCTGTACTACGGTTCTTGTGTCGGTGCCGCCAGGACCTTCAGGCGTCGGTGATGATTTCCCGAAAGTCTGGAGATGCAAATGTGGGAACAAGCTCTACATGCCCTGA ATGCACATAACTCAGATCAAAGAGTTGACCTTGTCAAGAAGAGGATTGAGTGGGCTGGGATCGTCGCCACCAAACTGTGACTCAAAGTGTGGGAGCTGCACGCCCTGTACTACGGTTCTTGTGTCGGTGCCGCCAGGACCTTCAGGCGTCGGTGATGATTTCCCGAAAGTCTGGAGATGCAAATGTGGGAACAAGCTCTACATGCCCTGA MHITQIKELTLSRRGLSGLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP Homology
BLAST of Csor.00g034060 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 1.8e-17 Identity = 38/57 (66.67%), Postives = 41/57 (71.93%), Query Frame = 0
BLAST of Csor.00g034060 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 2.0e-13 Identity = 32/58 (55.17%), Postives = 38/58 (65.52%), Query Frame = 0
BLAST of Csor.00g034060 vs. ExPASy Swiss-Prot
Match: Q9LUH9 (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EPFL5 PE=1 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 1.9e-11 Identity = 29/59 (49.15%), Postives = 37/59 (62.71%), Query Frame = 0
BLAST of Csor.00g034060 vs. ExPASy Swiss-Prot
Match: Q8S8I4 (Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=EPF1 PE=1 SV=1) HSP 1 Score: 45.8 bits (107), Expect = 2.3e-04 Identity = 19/48 (39.58%), Postives = 25/48 (52.08%), Query Frame = 0
BLAST of Csor.00g034060 vs. ExPASy Swiss-Prot
Match: P43212 (Polygalacturonase OS=Cryptomeria japonica OX=3369 PE=1 SV=1) HSP 1 Score: 44.3 bits (103), Expect = 6.6e-04 Identity = 21/51 (41.18%), Postives = 27/51 (52.94%), Query Frame = 0
BLAST of Csor.00g034060 vs. NCBI nr
Match: KAG6590330.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 153 bits (386), Expect = 6.43e-47 Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0
BLAST of Csor.00g034060 vs. NCBI nr
Match: KAG6583319.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 136 bits (343), Expect = 8.92e-40 Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0
BLAST of Csor.00g034060 vs. NCBI nr
Match: KAG6583317.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG6590332.1 EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 134 bits (336), Expect = 9.79e-39 Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0
BLAST of Csor.00g034060 vs. NCBI nr
Match: KAG6583316.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG6590333.1 EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 130 bits (328), Expect = 1.62e-37 Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0
BLAST of Csor.00g034060 vs. NCBI nr
Match: KAG6583645.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 129 bits (325), Expect = 4.65e-37 Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 0
BLAST of Csor.00g034060 vs. ExPASy TrEMBL
Match: A0A5D3BE35 (Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00580 PE=3 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 4.02e-23 Identity = 40/61 (65.57%), Postives = 44/61 (72.13%), Query Frame = 0
BLAST of Csor.00g034060 vs. ExPASy TrEMBL
Match: A0A498K737 (Epidermal patterning factor-like protein OS=Malus domestica OX=3750 GN=DVH24_038363 PE=3 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 6.98e-23 Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 0
BLAST of Csor.00g034060 vs. ExPASy TrEMBL
Match: A0A5N5FVQ0 (Epidermal patterning factor-like protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_006932 PE=3 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 6.98e-23 Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 0
BLAST of Csor.00g034060 vs. ExPASy TrEMBL
Match: A0A5N5GSP7 (Epidermal patterning factor-like protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_023260 PE=3 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 6.98e-23 Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 0
BLAST of Csor.00g034060 vs. ExPASy TrEMBL
Match: A0A540ME66 (Epidermal patterning factor-like protein OS=Malus baccata OX=106549 GN=C1H46_017345 PE=3 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 6.98e-23 Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 0
BLAST of Csor.00g034060 vs. TAIR 10
Match: AT2G30370.1 (allergen-related ) HSP 1 Score: 89.4 bits (220), Expect = 1.3e-18 Identity = 38/57 (66.67%), Postives = 41/57 (71.93%), Query Frame = 0
BLAST of Csor.00g034060 vs. TAIR 10
Match: AT2G30370.2 (allergen-related ) HSP 1 Score: 89.4 bits (220), Expect = 1.3e-18 Identity = 38/57 (66.67%), Postives = 41/57 (71.93%), Query Frame = 0
BLAST of Csor.00g034060 vs. TAIR 10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 75.9 bits (185), Expect = 1.4e-14 Identity = 32/58 (55.17%), Postives = 38/58 (65.52%), Query Frame = 0
BLAST of Csor.00g034060 vs. TAIR 10
Match: AT3G22820.1 (allergen-related ) HSP 1 Score: 69.3 bits (168), Expect = 1.4e-12 Identity = 29/59 (49.15%), Postives = 37/59 (62.71%), Query Frame = 0
BLAST of Csor.00g034060 vs. TAIR 10
Match: AT2G20875.1 (epidermal patterning factor 1 ) HSP 1 Score: 45.8 bits (107), Expect = 1.6e-05 Identity = 19/48 (39.58%), Postives = 25/48 (52.08%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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