Csor.00g033800 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g033800
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr07: 4567828 .. 4568371 (+)
RNA-Seq Expression	Csor.00g033800
Synteny	Csor.00g033800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAGTGTTGATGATGAAAGAAGACTGTATGAATGTGCAAGGAAATACCAAATAATTGTGAAACAGGTACCAACAAATAAAACCGTCCTCACTTGTTCTTGTTTTCGTATAAAGCCTTCAATAATCTTTACGTTCGTGTATCTATTTGATTCAGTTCGACCAATTGGTTGAGATGATGGACAACAAGAAGAAGGCAATGAGACTGTCAAAACGACGACGAATGTTTTCTGTAAGAGCTTTCTTCGACCTGAATTTATTTAGGTTTTATCTAATAATGATTTTGTTTTAGTTTCTTCACCACTTTAGTATCACTTTTCTTAAGGAAAATTTTGAATTCTTTGTTCAATTTTTTAAAAAGTGTTTTTTTGAATTGTTACAGAACCCAGACAATAATTTGTCAACCACCGTGACTCAGCCAACTTCAGATTCTCAACAAAATTGCAACGACGATGAAGCATTTGTGCAAACCCTCACAAGATTCCTACATGAACTCAGGACCGATACGACTGAACTGGATAGCTCAACCCGTACCCTAAACTAA

mRNA sequence

ATGTCGAGTGTTGATGATGAAAGAAGACTGTATGAATGTGCAAGGAAATACCAAATAATTGTGAAACAGTTCGACCAATTGGTTGAGATGATGGACAACAAGAAGAAGGCAATGAGACTGTCAAAACGACGACGAATGTTTTCTAACCCAGACAATAATTTGTCAACCACCGTGACTCAGCCAACTTCAGATTCTCAACAAAATTGCAACGACGATGAAGCATTTGTGCAAACCCTCACAAGATTCCTACATGAACTCAGGACCGATACGACTGAACTGGATAGCTCAACCCGTACCCTAAACTAA

Coding sequence (CDS)

ATGTCGAGTGTTGATGATGAAAGAAGACTGTATGAATGTGCAAGGAAATACCAAATAATTGTGAAACAGTTCGACCAATTGGTTGAGATGATGGACAACAAGAAGAAGGCAATGAGACTGTCAAAACGACGACGAATGTTTTCTAACCCAGACAATAATTTGTCAACCACCGTGACTCAGCCAACTTCAGATTCTCAACAAAATTGCAACGACGATGAAGCATTTGTGCAAACCCTCACAAGATTCCTACATGAACTCAGGACCGATACGACTGAACTGGATAGCTCAACCCGTACCCTAAACTAA

Protein sequence

MSSVDDERRLYECARKYQIIVKQFDQLVEMMDNKKKAMRLSKRRRMFSNPDNNLSTTVTQPTSDSQQNCNDDEAFVQTLTRFLHELRTDTTELDSSTRTLN

Homology

[Close]

BLAST of Csor.00g033800 vs. NCBI nr
Match: KAG6595252.1 (hypothetical protein SDJN03_11805, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194 bits (493), Expect = 3.01e-62
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MSSVDDERRLYECARKYQIIVKQFDQLVEMMDNKKKAMRLSKRRRMFSNPDNNLSTTVTQ 60
           MSSVDDERRLYECARKYQIIVKQFDQLVEMMDNKKKAMRLSKRRRMFSNPDNNLSTTVTQ
Sbjct: 1   MSSVDDERRLYECARKYQIIVKQFDQLVEMMDNKKKAMRLSKRRRMFSNPDNNLSTTVTQ 60

Query: 61  PTSDSQQNCNDDEAFVQTLTRFLHELRTDTTELDSSTRTLN 101
           PTSDSQQNCNDDEAFVQTLTRFLHELRTDTTELDSSTRTLN
Sbjct: 61  PTSDSQQNCNDDEAFVQTLTRFLHELRTDTTELDSSTRTLN 101

[Close]

BLAST of Csor.00g033800 vs. NCBI nr
Match: XP_022972657.1 (uncharacterized protein LOC111471189 [Cucurbita maxima])

HSP 1 Score: 190 bits (482), Expect = 1.43e-60
Identity = 99/101 (98.02%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MSSVDDERRLYECARKYQIIVKQFDQLVEMMDNKKKAMRLSKRRRMFSNPDNNLSTTVTQ 60
           MSSVDDERRLYECARKYQIIVKQFDQLVEMMDNKKKAMRLSKRRRMFSN DNNLSTTVTQ
Sbjct: 1   MSSVDDERRLYECARKYQIIVKQFDQLVEMMDNKKKAMRLSKRRRMFSNSDNNLSTTVTQ 60

Query: 61  PTSDSQQNCNDDEAFVQTLTRFLHELRTDTTELDSSTRTLN 101
           PTSDSQQNCNDDEAFVQTLTRFLHEL+TDTTELDSSTRTLN
Sbjct: 61  PTSDSQQNCNDDEAFVQTLTRFLHELKTDTTELDSSTRTLN 101

[Close]

BLAST of Csor.00g033800 vs. NCBI nr
Match: XP_023518736.1 (uncharacterized protein LOC111782160 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189 bits (479), Expect = 4.11e-60
Identity = 98/101 (97.03%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MSSVDDERRLYECARKYQIIVKQFDQLVEMMDNKKKAMRLSKRRRMFSNPDNNLSTTVTQ 60
           MSSVDDERRLYECARKYQIIVKQFDQLVEMMDNKKKAMRLSKRRRMFSN DNNLSTTVTQ
Sbjct: 1   MSSVDDERRLYECARKYQIIVKQFDQLVEMMDNKKKAMRLSKRRRMFSNSDNNLSTTVTQ 60

Query: 61  PTSDSQQNCNDDEAFVQTLTRFLHELRTDTTELDSSTRTLN 101
           PTSDSQQNCNDDEAFVQTLTRFLHEL+TDTTELD+STRTLN
Sbjct: 61  PTSDSQQNCNDDEAFVQTLTRFLHELKTDTTELDNSTRTLN 101

[Close]

BLAST of Csor.00g033800 vs. NCBI nr
Match: XP_022963091.1 (uncharacterized protein LOC111463394 [Cucurbita moschata])

HSP 1 Score: 187 bits (475), Expect = 1.68e-59
Identity = 98/101 (97.03%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MSSVDDERRLYECARKYQIIVKQFDQLVEMMDNKKKAMRLSKRRRMFSNPDNNLSTTVTQ 60
           MSSVDDERRLYECARKYQIIVKQFDQLVEMMD+KKKAMRLSKRRRMFSN DNNLSTTVTQ
Sbjct: 1   MSSVDDERRLYECARKYQIIVKQFDQLVEMMDDKKKAMRLSKRRRMFSNSDNNLSTTVTQ 60

Query: 61  PTSDSQQNCNDDEAFVQTLTRFLHELRTDTTELDSSTRTLN 101
           PTSDSQQNCN+DEAFVQTLTRFLHELRTDTTELDSSTRTLN
Sbjct: 61  PTSDSQQNCNNDEAFVQTLTRFLHELRTDTTELDSSTRTLN 101

[Close]

BLAST of Csor.00g033800 vs. NCBI nr
Match: XP_022143962.1 (uncharacterized protein LOC111013747 [Momordica charantia])

HSP 1 Score: 134 bits (338), Expect = 1.26e-38
Identity = 75/100 (75.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 1   MSSVDDERRLYECARKYQIIVKQFDQLVEMMDNKKKAMRLSKRRRMFSN-PDNNLSTTVT 60
           MS+VDDERRLYECARKYQIIVKQFDQL+EMMDNK KA RLSKRRR  S+   ++ ST   
Sbjct: 1   MSAVDDERRLYECARKYQIIVKQFDQLIEMMDNKTKATRLSKRRRKSSSLRASDSSTIAA 60

Query: 61  QPTSDSQQNCNDDEAFVQTLTRFLHELRTDTTELDSSTRT 99
           QPT   QQN NDD+AFVQT+TRFLHELRTD +ELDSST T
Sbjct: 61  QPTPSCQQNYNDDDAFVQTITRFLHELRTDPSELDSSTCT 100

[Close]

BLAST of Csor.00g033800 vs. ExPASy TrEMBL
Match: A0A6J1I5F9 (uncharacterized protein LOC111471189 OS=Cucurbita maxima OX=3661 GN=LOC111471189 PE=4 SV=1)

HSP 1 Score: 190 bits (482), Expect = 6.94e-61
Identity = 99/101 (98.02%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MSSVDDERRLYECARKYQIIVKQFDQLVEMMDNKKKAMRLSKRRRMFSNPDNNLSTTVTQ 60
           MSSVDDERRLYECARKYQIIVKQFDQLVEMMDNKKKAMRLSKRRRMFSN DNNLSTTVTQ
Sbjct: 1   MSSVDDERRLYECARKYQIIVKQFDQLVEMMDNKKKAMRLSKRRRMFSNSDNNLSTTVTQ 60

Query: 61  PTSDSQQNCNDDEAFVQTLTRFLHELRTDTTELDSSTRTLN 101
           PTSDSQQNCNDDEAFVQTLTRFLHEL+TDTTELDSSTRTLN
Sbjct: 61  PTSDSQQNCNDDEAFVQTLTRFLHELKTDTTELDSSTRTLN 101

[Close]

BLAST of Csor.00g033800 vs. ExPASy TrEMBL
Match: A0A6J1HF45 (uncharacterized protein LOC111463394 OS=Cucurbita moschata OX=3662 GN=LOC111463394 PE=4 SV=1)

HSP 1 Score: 187 bits (475), Expect = 8.11e-60
Identity = 98/101 (97.03%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MSSVDDERRLYECARKYQIIVKQFDQLVEMMDNKKKAMRLSKRRRMFSNPDNNLSTTVTQ 60
           MSSVDDERRLYECARKYQIIVKQFDQLVEMMD+KKKAMRLSKRRRMFSN DNNLSTTVTQ
Sbjct: 1   MSSVDDERRLYECARKYQIIVKQFDQLVEMMDDKKKAMRLSKRRRMFSNSDNNLSTTVTQ 60

Query: 61  PTSDSQQNCNDDEAFVQTLTRFLHELRTDTTELDSSTRTLN 101
           PTSDSQQNCN+DEAFVQTLTRFLHELRTDTTELDSSTRTLN
Sbjct: 61  PTSDSQQNCNNDEAFVQTLTRFLHELRTDTTELDSSTRTLN 101

[Close]

BLAST of Csor.00g033800 vs. ExPASy TrEMBL
Match: A0A6J1CSB9 (uncharacterized protein LOC111013747 OS=Momordica charantia OX=3673 GN=LOC111013747 PE=4 SV=1)

HSP 1 Score: 134 bits (338), Expect = 6.10e-39
Identity = 75/100 (75.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 1   MSSVDDERRLYECARKYQIIVKQFDQLVEMMDNKKKAMRLSKRRRMFSN-PDNNLSTTVT 60
           MS+VDDERRLYECARKYQIIVKQFDQL+EMMDNK KA RLSKRRR  S+   ++ ST   
Sbjct: 1   MSAVDDERRLYECARKYQIIVKQFDQLIEMMDNKTKATRLSKRRRKSSSLRASDSSTIAA 60

Query: 61  QPTSDSQQNCNDDEAFVQTLTRFLHELRTDTTELDSSTRT 99
           QPT   QQN NDD+AFVQT+TRFLHELRTD +ELDSST T
Sbjct: 61  QPTPSCQQNYNDDDAFVQTITRFLHELRTDPSELDSSTCT 100

[Close]

BLAST of Csor.00g033800 vs. ExPASy TrEMBL
Match: A0A067DQ64 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g042166mg PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 8.70e-16
Identity = 51/95 (53.68%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 5  DDERRLYECARKYQIIVKQFDQLVEMMDNKKKAMRLSKRRRMFSNPDNNLST--TVTQPT 64
          DDERRLY+C RKY+IIVKQFD+L+EMM  + K     KRRR+ S    + S   T T P 
Sbjct: 6  DDERRLYQCVRKYKIIVKQFDELIEMMSARTKP---PKRRRVASRCGGSSSNAATTTAPA 65

Query: 65 SDSQQNCNDDEAFVQTLTRFLHELRTDTTELDSST 97
          S SQ + N  E FVQT++RFL +LRT   E DS+T
Sbjct: 66 SSSQPDQN--EVFVQTISRFLQDLRT---ESDSTT 92

[Close]

BLAST of Csor.00g033800 vs. ExPASy TrEMBL
Match: A0A2H5QT77 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_259570 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 8.70e-16
Identity = 51/95 (53.68%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 5  DDERRLYECARKYQIIVKQFDQLVEMMDNKKKAMRLSKRRRMFSNPDNNLST--TVTQPT 64
          DDERRLY+C RKY+IIVKQFD+L+EMM  + K     KRRR+ S    + S   T T P 
Sbjct: 6  DDERRLYQCVRKYKIIVKQFDELIEMMSARTKP---PKRRRVASRCGGSSSNAATTTAPA 65

Query: 65 SDSQQNCNDDEAFVQTLTRFLHELRTDTTELDSST 97
          S SQ + N  E FVQT++RFL +LRT   E DS+T
Sbjct: 66 SSSQPDQN--EVFVQTISRFLQDLRT---ESDSTT 92

The following BLAST results are available for this feature:

BLAST of Csor.00g033800 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g033800 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595252.1	3.01e-62	100.00	hypothetical protein SDJN03_11805, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022972657.1	1.43e-60	98.02	uncharacterized protein LOC111471189 [Cucurbita maxima]	[more]
XP_023518736.1	4.11e-60	97.03	uncharacterized protein LOC111782160 [Cucurbita pepo subsp. pepo]	[more]
XP_022963091.1	1.68e-59	97.03	uncharacterized protein LOC111463394 [Cucurbita moschata]	[more]
XP_022143962.1	1.26e-38	75.00	uncharacterized protein LOC111013747 [Momordica charantia]	[more]

BLAST of Csor.00g033800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I5F9	6.94e-61	98.02	uncharacterized protein LOC111471189 OS=Cucurbita maxima OX=3661 GN=LOC111471189...	[more]
A0A6J1HF45	8.11e-60	97.03	uncharacterized protein LOC111463394 OS=Cucurbita moschata OX=3662 GN=LOC1114633...	[more]
A0A6J1CSB9	6.10e-39	75.00	uncharacterized protein LOC111013747 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A067DQ64	8.70e-16	53.68	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g042166mg PE=4 SV=1	[more]
A0A2H5QT77	8.70e-16	53.68	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_259570 PE=4 SV=1	[more]

BLAST of Csor.00g033800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g033800.m01	Csor.00g033800.m01	mRNA