Csor.00g032400 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g032400
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionpollen-specific leucine-rich repeat extensin-like protein 1 isoform X2
LocationCsor_Chr07: 3615031 .. 3616071 (-)
RNA-Seq ExpressionCsor.00g032400
SyntenyCsor.00g032400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCTTGTGCCACTAAGCCCAAGGTTCTTCAGTTTCATTCCCGCCAGTCACCGGAGCCTCCTCCGGAGGATGCTCCGGCCGCCGAAACTAAACGGGACACCGCGGATATCGTCGATGATCACAAGGTGAATTACTCTTAACTCTCCTTCTCTTACCATTTGTTCTTCCAATTACTCTGTTTTTGATTCATAATGCCCCTGATTTCATCATTTTAATGTGTTTTTCCTTTTCCCTCCTTAAAAAATCTGTTTGGATTCTCAGAAAATTGGGGAAAAGAAAATAAACGAAAAAGGGATAATAATTGTGTCGGATCCGGCCTGGAAAAAAGAACGAATCTCGATGAATTTCTGTTCTAATGCATCGCTGCTTGTCTTTTTCCTTTCATTTCCCTGTTTGTTTGTTTTTTTTTAAATTACTTTATTGGACAGTCCAATAAAACCAAGCTTGTTTTGATTTGAATTTTTTGGACTAATCCAAAATCTCGGGTTGGTTGTGTTTGTGACATCGTAAATGTCATATTGTTTTTTTTTTTAATCATTAAAAATAATCATAATTATCCACGGTCATGTTATATTAATAACAAAATTTAATAAAACTTAAATATCAGATAATTATAACTCATTTTCAAAATAATTTAAAGAAAAAATGTATTATATAAGATGGATGTTGGTTTCTACAAATGGGTACGTAATCAAATAAATGGGCTTAAACTGCCCGTTTGAACTCAATTTGGGCCAGCCCATATTCTTAAACCTCGCCCTATATTCTAGGCCCAGCCCACATATGGAGGAAAATAAATAGAGTTTCTTATTATTTGGATGATTGTTATAATACAGAACGAAGGTAAGGAGAAGGCGGCGGCAGCAGCAGAGACCCCACCGGAAACTGAAACTGAAAAAGAAACCAACCCACCGGAGCCGCCACCCTCCGATGATGTAACAGACAAGACAACGGTGGTGGAAACTCCATGTGAGACAAAGAAGGAAAATAACCCAACAAATTGGGAAGCAGAGAAAGAAGTTAAGGTAATTAATTAG

mRNA sequence

ATGGGAGCTTGTGCCACTAAGCCCAAGGTTCTTCAGTTTCATTCCCGCCAGTCACCGGAGCCTCCTCCGGAGGATGCTCCGGCCGCCGAAACTAAACGGGACACCGCGGATATCGTCGATGATCACAAGAACGAAGGTAAGGAGAAGGCGGCGGCAGCAGCAGAGACCCCACCGGAAACTGAAACTGAAAAAGAAACCAACCCACCGGAGCCGCCACCCTCCGATGATGTAACAGACAAGACAACGGTGGTGGAAACTCCATGTGAGACAAAGAAGGAAAATAACCCAACAAATTGGGAAGCAGAGAAAGAAGTTAAGGTAATTAATTAG

Coding sequence (CDS)

ATGGGAGCTTGTGCCACTAAGCCCAAGGTTCTTCAGTTTCATTCCCGCCAGTCACCGGAGCCTCCTCCGGAGGATGCTCCGGCCGCCGAAACTAAACGGGACACCGCGGATATCGTCGATGATCACAAGAACGAAGGTAAGGAGAAGGCGGCGGCAGCAGCAGAGACCCCACCGGAAACTGAAACTGAAAAAGAAACCAACCCACCGGAGCCGCCACCCTCCGATGATGTAACAGACAAGACAACGGTGGTGGAAACTCCATGTGAGACAAAGAAGGAAAATAACCCAACAAATTGGGAAGCAGAGAAAGAAGTTAAGGTAATTAATTAG

Protein sequence

MGACATKPKVLQFHSRQSPEPPPEDAPAAETKRDTADIVDDHKNEGKEKAAAAAETPPETETEKETNPPEPPPSDDVTDKTTVVETPCETKKENNPTNWEAEKEVKVIN
Homology
BLAST of Csor.00g032400 vs. NCBI nr
Match: KAG6595113.1 (hypothetical protein SDJN03_11666, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027128.1 hypothetical protein SDJN02_11139 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211 bits (536), Expect = 1.49e-68
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0

Query: 1   MGACATKPKVLQFHSRQSPEPPPEDAPAAETKRDTADIVDDHKNEGKEKAAAAAETPPET 60
           MGACATKPKVLQFHSRQSPEPPPEDAPAAETKRDTADIVDDHKNEGKEKAAAAAETPPET
Sbjct: 1   MGACATKPKVLQFHSRQSPEPPPEDAPAAETKRDTADIVDDHKNEGKEKAAAAAETPPET 60

Query: 61  ETEKETNPPEPPPSDDVTDKTTVVETPCETKKENNPTNWEAEKEVKVIN 109
           ETEKETNPPEPPPSDDVTDKTTVVETPCETKKENNPTNWEAEKEVKVIN
Sbjct: 61  ETEKETNPPEPPPSDDVTDKTTVVETPCETKKENNPTNWEAEKEVKVIN 109

BLAST of Csor.00g032400 vs. NCBI nr
Match: XP_022963155.1 (uncharacterized protein LOC111463450 isoform X1 [Cucurbita moschata])

HSP 1 Score: 195 bits (496), Expect = 1.65e-62
Identity = 104/109 (95.41%), Postives = 104/109 (95.41%), Query Frame = 0

Query: 1   MGACATKPKVLQFHSRQSPEPPPEDAPAAETKRDTADIVDDHKNEGKEKAAAAAETPPET 60
           MGACATKPKVLQ HSRQSPEPPP    AAETKRDTADIVDDHKNEGKEKAAAAAETPPET
Sbjct: 1   MGACATKPKVLQLHSRQSPEPPP----AAETKRDTADIVDDHKNEGKEKAAAAAETPPET 60

Query: 61  ETEKETNPPEPPPSDDVTDKTTVVETPCETKKENNPTNWEAEKEVKVIN 109
           ETEKETNPPEPPPSDDVTDKTTVVETPCETKKENNPTNWEAEKEVKVIN
Sbjct: 61  ETEKETNPPEPPPSDDVTDKTTVVETPCETKKENNPTNWEAEKEVKVIN 105

BLAST of Csor.00g032400 vs. NCBI nr
Match: XP_022963156.1 (uncharacterized protein LOC111463450 isoform X2 [Cucurbita moschata])

HSP 1 Score: 168 bits (425), Expect = 7.68e-52
Identity = 92/109 (84.40%), Postives = 92/109 (84.40%), Query Frame = 0

Query: 1   MGACATKPKVLQFHSRQSPEPPPEDAPAAETKRDTADIVDDHKNEGKEKAAAAAETPPET 60
           MGACATKPKVLQ HSRQSP                ADIVDDHKNEGKEKAAAAAETPPET
Sbjct: 1   MGACATKPKVLQLHSRQSP----------------ADIVDDHKNEGKEKAAAAAETPPET 60

Query: 61  ETEKETNPPEPPPSDDVTDKTTVVETPCETKKENNPTNWEAEKEVKVIN 109
           ETEKETNPPEPPPSDDVTDKTTVVETPCETKKENNPTNWEAEKEVKVIN
Sbjct: 61  ETEKETNPPEPPPSDDVTDKTTVVETPCETKKENNPTNWEAEKEVKVIN 93

BLAST of Csor.00g032400 vs. NCBI nr
Match: XP_038881340.1 (early nodulin-75-like isoform X3 [Benincasa hispida])

HSP 1 Score: 59.7 bits (143), Expect = 2.82e-08
Identity = 54/129 (41.86%), Postives = 67/129 (51.94%), Query Frame = 0

Query: 1   MGACATKPKVLQFHSRQSPEPPPEDAP---AAETKRDTA------DIVDDHKNEGK---- 60
           MGACATKPKVL+  + ++P P PE +P   AA TK +        +IVDD K EGK    
Sbjct: 1   MGACATKPKVLKAEAGEAPAPAPEPSPEEVAAGTKPENVGDGKATEIVDDDKKEGKKESN 60

Query: 61  EKAAAAAETPPET------ETEK------------ETNPPEPPP--SDDVTDKTTVVETP 96
           EK     E PPE       ET K            E NPPEP P  SD VT+    +E+P
Sbjct: 61  EKEKTEDENPPEKQDTTPPETAKQIIKPPPEEKPSENNPPEPEPPVSDSVTENKKSIESP 120

BLAST of Csor.00g032400 vs. NCBI nr
Match: XP_008441003.1 (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 isoform X2 [Cucumis melo])

HSP 1 Score: 55.1 bits (131), Expect = 1.29e-06
Identity = 59/163 (36.20%), Postives = 71/163 (43.56%), Query Frame = 0

Query: 1   MGACATKPKVLQFHSRQSPEPPPEDAPAAETKRDTAD-------IVDDHKNEGKEKAAAA 60
           MGACATKPK ++  S ++PE  P     AETK D          +VDD K EG ++    
Sbjct: 1   MGACATKPKGMKAESGEAPEELP-----AETKPDHVGDEKAKEIVVDDDKKEGNKEKTEG 60

Query: 61  AE-------TPPETETE---------KETNPPEPPPSDDVTDKTTVV------ETPCETK 109
           A+        PPETE +          E NPPEP  SD VT+  TV+      ETP E  
Sbjct: 61  ADPPEKQETNPPETEKQIDPLPEEKPSENNPPEPAVSDSVTENNTVISSEKLMETPNEEN 120

BLAST of Csor.00g032400 vs. ExPASy TrEMBL
Match: A0A6J1HH69 (uncharacterized protein LOC111463450 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463450 PE=4 SV=1)

HSP 1 Score: 195 bits (496), Expect = 8.01e-63
Identity = 104/109 (95.41%), Postives = 104/109 (95.41%), Query Frame = 0

Query: 1   MGACATKPKVLQFHSRQSPEPPPEDAPAAETKRDTADIVDDHKNEGKEKAAAAAETPPET 60
           MGACATKPKVLQ HSRQSPEPPP    AAETKRDTADIVDDHKNEGKEKAAAAAETPPET
Sbjct: 1   MGACATKPKVLQLHSRQSPEPPP----AAETKRDTADIVDDHKNEGKEKAAAAAETPPET 60

Query: 61  ETEKETNPPEPPPSDDVTDKTTVVETPCETKKENNPTNWEAEKEVKVIN 109
           ETEKETNPPEPPPSDDVTDKTTVVETPCETKKENNPTNWEAEKEVKVIN
Sbjct: 61  ETEKETNPPEPPPSDDVTDKTTVVETPCETKKENNPTNWEAEKEVKVIN 105

BLAST of Csor.00g032400 vs. ExPASy TrEMBL
Match: A0A6J1HFA8 (uncharacterized protein LOC111463450 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111463450 PE=4 SV=1)

HSP 1 Score: 168 bits (425), Expect = 3.72e-52
Identity = 92/109 (84.40%), Postives = 92/109 (84.40%), Query Frame = 0

Query: 1   MGACATKPKVLQFHSRQSPEPPPEDAPAAETKRDTADIVDDHKNEGKEKAAAAAETPPET 60
           MGACATKPKVLQ HSRQSP                ADIVDDHKNEGKEKAAAAAETPPET
Sbjct: 1   MGACATKPKVLQLHSRQSP----------------ADIVDDHKNEGKEKAAAAAETPPET 60

Query: 61  ETEKETNPPEPPPSDDVTDKTTVVETPCETKKENNPTNWEAEKEVKVIN 109
           ETEKETNPPEPPPSDDVTDKTTVVETPCETKKENNPTNWEAEKEVKVIN
Sbjct: 61  ETEKETNPPEPPPSDDVTDKTTVVETPCETKKENNPTNWEAEKEVKVIN 93

BLAST of Csor.00g032400 vs. ExPASy TrEMBL
Match: A0A1S3B2F3 (pollen-specific leucine-rich repeat extensin-like protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485247 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.23e-07
Identity = 59/163 (36.20%), Postives = 71/163 (43.56%), Query Frame = 0

Query: 1   MGACATKPKVLQFHSRQSPEPPPEDAPAAETKRDTAD-------IVDDHKNEGKEKAAAA 60
           MGACATKPK ++  S ++PE  P     AETK D          +VDD K EG ++    
Sbjct: 1   MGACATKPKGMKAESGEAPEELP-----AETKPDHVGDEKAKEIVVDDDKKEGNKEKTEG 60

Query: 61  AE-------TPPETETE---------KETNPPEPPPSDDVTDKTTVV------ETPCETK 109
           A+        PPETE +          E NPPEP  SD VT+  TV+      ETP E  
Sbjct: 61  ADPPEKQETNPPETEKQIDPLPEEKPSENNPPEPAVSDSVTENNTVISSEKLMETPNEEN 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6595113.11.49e-68100.00hypothetical protein SDJN03_11666, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022963155.11.65e-6295.41uncharacterized protein LOC111463450 isoform X1 [Cucurbita moschata][more]
XP_022963156.17.68e-5284.40uncharacterized protein LOC111463450 isoform X2 [Cucurbita moschata][more]
XP_038881340.12.82e-0841.86early nodulin-75-like isoform X3 [Benincasa hispida][more]
XP_008441003.11.29e-0636.20PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 isoform X... [more]
Match NameE-valueIdentityDescription
A0A6J1HH698.01e-6395.41uncharacterized protein LOC111463450 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1HFA83.72e-5284.40uncharacterized protein LOC111463450 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A1S3B2F36.23e-0736.20pollen-specific leucine-rich repeat extensin-like protein 1 isoform X2 OS=Cucumi... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g032400.m01Csor.00g032400.m01mRNA