Csor.00g031940 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g031940
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr15: 2148806 .. 2149611 (+)
RNA-Seq Expression	Csor.00g031940
Synteny	Csor.00g031940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCACTGACAGATTTCTGTCGGGATAGTGGCGACATTTCCACCAGGAATGATCTGAATACAAGTCCAGAGATGTTGAAGCCATCTTCGGCTTCCTCAGACGATGTCTCACCCAACTCGAGAGGAAAGAGTTCAGATTCTGGTATTAACATGGAAGGGACGGCAGGTTGGAGGCTTTCAAATAGCCCTTGGAACTTGCAAGTAATTGCGGGATCTCCTGGATCACTTACGCGTTATATGCCTGATGACATTCCGATCGTTACTTCTCCGATGGTTTACATTGGCATGTTGAAGATCATGAGTTGCATAGCATGAATTTTCTTTCCATTTCAGGAGATCGTGCATTTGCTTTTGAGGAAGTAGTAAGAACTCAGGCTTCTGGTGGTTGTGTCGACCACCCAGGTATGGATTCATTTTGGTTAAGCAATCGCGTTTTTACGTTTTTAGGCAGTGGCTGGTTAGGATAGCATTTCTAAGTACATTCTTTTTAAACTAGAAATAGTATTTTAGGGCCATACGAAAATAGAGGAATTAATTGAAGCTTGATGGAGGAATTAATGCAGTTAGATACAGAGAAAGCTGGGTTTGGCTTCACCTGCTTTAACTTTCACCATAAGAGTACAATGAATCAAGCTGAAGAGGCAACATTGCTAAGTAAGAGAGCAAGGATCTAATATCAAATATATGCAATTTCTGAACTGGATCTTCGTGTGATGGGGAAGTCCATAATGAAAGGTGCCTGAAAATGGAGTATTGTTGCTCTAGGTTGCTTACTACTTGAAGAAAATGGCAGAGGGGACTGA

mRNA sequence

ATGGCGGCACTGACAGATTTCTGTCGGGATAGTGGCGACATTTCCACCAGGAATGATCTGAATACAAGTCCAGAGATGTTGAAGCCATCTTCGGCTTCCTCAGACGATGTCTCACCCAACTCGAGAGGAAAGAGTTCAGATTCTGGTATTAACATGGAAGGGACGGCAGGAGATCGTGCATTTGCTTTTGAGGAAGTAGTAAGAACTCAGGCTTCTGGTGGTTGTGTCGACCACCCAGATACAGAGAAAGCTGGGTTTGGCTTCACCTGCTTTAACTTTCACCATAAGAGTACAATGAATCAAGCTGAAGAGGCAACATTGCTAAGTTGCTTACTACTTGAAGAAAATGGCAGAGGGGACTGA

Coding sequence (CDS)

ATGGCGGCACTGACAGATTTCTGTCGGGATAGTGGCGACATTTCCACCAGGAATGATCTGAATACAAGTCCAGAGATGTTGAAGCCATCTTCGGCTTCCTCAGACGATGTCTCACCCAACTCGAGAGGAAAGAGTTCAGATTCTGGTATTAACATGGAAGGGACGGCAGGAGATCGTGCATTTGCTTTTGAGGAAGTAGTAAGAACTCAGGCTTCTGGTGGTTGTGTCGACCACCCAGATACAGAGAAAGCTGGGTTTGGCTTCACCTGCTTTAACTTTCACCATAAGAGTACAATGAATCAAGCTGAAGAGGCAACATTGCTAAGTTGCTTACTACTTGAAGAAAATGGCAGAGGGGACTGA

Protein sequence

MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGDRAFAFEEVVRTQASGGCVDHPDTEKAGFGFTCFNFHHKSTMNQAEEATLLSCLLLEENGRGD

Homology

[Close]

BLAST of Csor.00g031940 vs. NCBI nr
Match: KAG6578769.1 (hypothetical protein SDJN03_23217, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 241 bits (616), Expect = 2.09e-80
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGDRA 60
           MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGDRA
Sbjct: 1   MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGDRA 60

Query: 61  FAFEEVVRTQASGGCVDHPDTEKAGFGFTCFNFHHKSTMNQAEEATLLSCLLLEENGRGD 120
           FAFEEVVRTQASGGCVDHPDTEKAGFGFTCFNFHHKSTMNQAEEATLLSCLLLEENGRGD
Sbjct: 61  FAFEEVVRTQASGGCVDHPDTEKAGFGFTCFNFHHKSTMNQAEEATLLSCLLLEENGRGD 120

[Close]

BLAST of Csor.00g031940 vs. NCBI nr
Match: KAG7016297.1 (hypothetical protein SDJN02_21404, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152 bits (384), Expect = 1.35e-44
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGDRA 60
          MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGDRA
Sbjct: 1  MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGDRA 60

Query: 61 FAFEEVVRTQASGGCVDHP 79
          FAFEEVVRTQASGGCVD P
Sbjct: 61 FAFEEVVRTQASGGCVDPP 79

[Close]

BLAST of Csor.00g031940 vs. NCBI nr
Match: XP_022938403.1 (uncharacterized protein LOC111444663 [Cucurbita moschata] >XP_022938405.1 uncharacterized protein LOC111444663 [Cucurbita moschata] >XP_022938406.1 uncharacterized protein LOC111444663 [Cucurbita moschata] >XP_022938407.1 uncharacterized protein LOC111444663 [Cucurbita moschata] >XP_022938408.1 uncharacterized protein LOC111444663 [Cucurbita moschata] >XP_022938409.1 uncharacterized protein LOC111444663 [Cucurbita moschata])

HSP 1 Score: 110 bits (276), Expect = 1.27e-27
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1   MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGDR 59
           MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAG R
Sbjct: 100 MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGWR 158

[Close]

BLAST of Csor.00g031940 vs. NCBI nr
Match: XP_023550186.1 (uncharacterized protein LOC111808443 [Cucurbita pepo subsp. pepo] >XP_023550187.1 uncharacterized protein LOC111808443 [Cucurbita pepo subsp. pepo] >XP_023550188.1 uncharacterized protein LOC111808443 [Cucurbita pepo subsp. pepo] >XP_023550189.1 uncharacterized protein LOC111808443 [Cucurbita pepo subsp. pepo] >XP_023550190.1 uncharacterized protein LOC111808443 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108 bits (271), Expect = 7.18e-27
Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 1   MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGDR 59
           MAALTDFCRDSGDIS RNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAG R
Sbjct: 100 MAALTDFCRDSGDISARNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGWR 158

[Close]

BLAST of Csor.00g031940 vs. NCBI nr
Match: TYK00006.1 (putative lysine-specific demethylase ELF6 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 2.63e-14
Identity = 63/152 (41.45%), Postives = 68/152 (44.74%), Query Frame = 0


Query: 1   MAALTD-FCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAG-- 60
           M +LTD  CRDSG IS RNDLNTS EMLKPS+ S++DVS NSRGKSSDS INMEGTAG  
Sbjct: 215 MESLTDSLCRDSGGISNRNDLNTSSEMLKPST-STEDVSHNSRGKSSDSCINMEGTAGWR 274

Query: 61  ------------------------------------------------------------ 78
                                                                       
Sbjct: 275 LSNSPWNLQVIARSPGSLTRYMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHV 334

[Close]

BLAST of Csor.00g031940 vs. ExPASy TrEMBL
Match: A0A6J1FE04 (uncharacterized protein LOC111444663 OS=Cucurbita moschata OX=3662 GN=LOC111444663 PE=4 SV=1)

HSP 1 Score: 110 bits (276), Expect = 6.16e-28
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1   MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGDR 59
           MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAG R
Sbjct: 100 MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGWR 158

[Close]

BLAST of Csor.00g031940 vs. ExPASy TrEMBL
Match: A0A5D3BP09 (Putative lysine-specific demethylase ELF6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00510 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.28e-14
Identity = 63/152 (41.45%), Postives = 68/152 (44.74%), Query Frame = 0


Query: 1   MAALTD-FCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAG-- 60
           M +LTD  CRDSG IS RNDLNTS EMLKPS+ S++DVS NSRGKSSDS INMEGTAG  
Sbjct: 215 MESLTDSLCRDSGGISNRNDLNTSSEMLKPST-STEDVSHNSRGKSSDSCINMEGTAGWR 274

Query: 61  ------------------------------------------------------------ 78
                                                                       
Sbjct: 275 LSNSPWNLQVIARSPGSLTRYMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHV 334

[Close]

BLAST of Csor.00g031940 vs. ExPASy TrEMBL
Match: A0A5A7T0S2 (Putative lysine-specific demethylase ELF6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold147G00520 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.68e-14
Identity = 63/152 (41.45%), Postives = 68/152 (44.74%), Query Frame = 0


Query: 1   MAALTD-FCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAG-- 60
           M +LTD  CRDSG IS RNDLNTS EMLKPS+ S++DVS NSRGKSSDS INMEGTAG  
Sbjct: 215 MESLTDSLCRDSGGISNRNDLNTSSEMLKPST-STEDVSHNSRGKSSDSCINMEGTAGWR 274

Query: 61  ------------------------------------------------------------ 78
                                                                       
Sbjct: 275 LSNSPWNLQVIARSPGSLTRYMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHV 334

[Close]

BLAST of Csor.00g031940 vs. ExPASy TrEMBL
Match: A0A1S3C4P0 (probable lysine-specific demethylase ELF6 OS=Cucumis melo OX=3656 GN=LOC103496436 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.68e-14
Identity = 63/152 (41.45%), Postives = 68/152 (44.74%), Query Frame = 0


Query: 1   MAALTD-FCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAG-- 60
           M +LTD  CRDSG IS RNDLNTS EMLKPS+ S++DVS NSRGKSSDS INMEGTAG  
Sbjct: 215 MESLTDSLCRDSGGISNRNDLNTSSEMLKPST-STEDVSHNSRGKSSDSCINMEGTAGWR 274

Query: 61  ------------------------------------------------------------ 78
                                                                       
Sbjct: 275 LSNSPWNLQVIARSPGSLTRYMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHV 334

[Close]

BLAST of Csor.00g031940 vs. ExPASy TrEMBL
Match: A0A0A0KHH8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G405990 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.29e-14
Identity = 63/152 (41.45%), Postives = 67/152 (44.08%), Query Frame = 0


Query: 1   MAALTD-FCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAG-- 60
           M  LTD  CRDSG IS RNDLNTS EMLKPS+ S++DVS NSRGKSSDS INMEGTAG  
Sbjct: 215 METLTDSLCRDSGGISNRNDLNTSSEMLKPST-STEDVSHNSRGKSSDSCINMEGTAGWR 274

Query: 61  ------------------------------------------------------------ 78
                                                                       
Sbjct: 275 LSNSPWNLQVIARSPGSLTRYMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHV 334

The following BLAST results are available for this feature:

BLAST of Csor.00g031940 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g031940 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578769.1	2.09e-80	100.00	hypothetical protein SDJN03_23217, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7016297.1	1.35e-44	98.73	hypothetical protein SDJN02_21404, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022938403.1	1.27e-27	98.31	uncharacterized protein LOC111444663 [Cucurbita moschata] >XP_022938405.1 unchar...	[more]
XP_023550186.1	7.18e-27	96.61	uncharacterized protein LOC111808443 [Cucurbita pepo subsp. pepo] >XP_023550187....	[more]
TYK00006.1	2.63e-14	41.45	putative lysine-specific demethylase ELF6 [Cucumis melo var. makuwa]	[more]

BLAST of Csor.00g031940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FE04	6.16e-28	98.31	uncharacterized protein LOC111444663 OS=Cucurbita moschata OX=3662 GN=LOC1114446...	[more]
A0A5D3BP09	1.28e-14	41.45	Putative lysine-specific demethylase ELF6 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5A7T0S2	1.68e-14	41.45	Putative lysine-specific demethylase ELF6 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3C4P0	1.68e-14	41.45	probable lysine-specific demethylase ELF6 OS=Cucumis melo OX=3656 GN=LOC10349643...	[more]
A0A0A0KHH8	2.29e-14	41.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G405990 PE=4 SV=1	[more]

BLAST of Csor.00g031940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g031940.m01	Csor.00g031940.m01	mRNA