Csor.00g031670 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g031670
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description40S ribosomal protein S23
LocationCsor_Chr15: 1995085 .. 1997724 (-)
RNA-Seq ExpressionCsor.00g031670
SyntenyCsor.00g031670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTACGAATTTCTCTCTTCTCTGCATTGTCTTTCTTTCATGGCGTCTTCTCTTCTTCGTCTTCATCCAATTATGTTTTCTCGAAGAAGTTGCAATCGTTCTGTCTGCTCTTTGACTGATTGCTAGGAGCCTCGATTATTATTATTATTATTATTTGTGTTCATATTGTTTGTTGAATCTTCATGAATAATCAAACGGACGCGGTGCTACTTTGAACAACTCTGAAGGCGTCATTTCGTTCGGATCTCTAATTTTAGTCTGGCTGTTTGTTTGGATATTAATCTGGAAATAGTGTATAGGACTACTTTCTTTTGTTTGGATATTAATCTGGAAATAGTGTATAGGACTACTTTCTTTTTTTTTTTAACTCAAAAGTGGAACCGTGGCATTGGTGTAATGTCGCTCGTCAATTGAAATGTCTTGGTTTAAAACATTTACTGATACGATCTAGTTAGTTTATTGATAAATCCATAGGTTCGGAGTTGTTCACAATCTGTTAGTCCGATTCCGATTATGTGAGTGTATATGGTTAGAGTTTATTCATTAGTATCAGTGGAAACAGCTCCCTAATTCATACTCTAAGCTTGAATTCTATTGTTGATAGTCTCTCTCTCACTCTCACTCTCTCTCTCTCTCTCTCTCTCACACACACACACACTCTCTCTTCGCTCGTCCGTGTAGTTGAAATAATCTATCTGATAATACAAGTGGAAACAACTTTTGGAAATTCAAACCTCATATACTACGTTTGGATATGTTTGTTTGCAACTTCTATACCTAATTTATTGGGAGTATAGTTGAGCCTAGATTTCTCATCCTAAATCTCCATATGAAGGTTCCGTGGTTATCCGGTGAGGCTCTTTATCCTCTTTTTTTTTTTTTTTTTTTGTTGTTGTTGTTATCTATTTTGTTGCGGAGTATATTCTGTTAATATGATTGGAAATACCATTCCAAATTCATATACGAAGTTTAGATGATGGATGTTATTGTTTCAATTTCTGCATGTAATTTTGTAGGAGGAGACCTAAACATAGATTCTTCATCCTCGTTGAATTTCATATACATTCCCCCAATCTTAATATTTAGATTACTCCATTCTTCTTCACAAATAGCAAGAAGCTTTAGCTCCATTCAAATTCTTGAAGGATACATTCTTAACAAAACTGATATACTCTTTAATTGTACACATTGTACGAGTTTATCCACTCCTTATTAGTTAGTATAATTCCCAACTCCTTTGGTAATGACTGAAGTTTTGTTTCATATGTGCATTCTTTTAGTTAGTTGGATTATGTAACGTTAGTTGTATTTATTTTGTTTGCATATCTTGCAGGAAGACTCGAGGAATGGGAGCAGGACGTAAGTTGAAGTCCCACCGTAGAAGGCAGAGATGGGCAGATAAGTCATATAAGAAATCCCATCTTGGTAATGAGTGGAAAAAGCCTTTTGCAGGGTCATCTCATGCGAAAGGAATTGTGCTCGAAAAGATGTAAGGCTATTGCTGCTTATGCTATTGTCGATGTGTTGTCAATATTTATTAGTCTTGAATTTTCTAATGCAGTGGAATTGAAGCCAAGCAGCCAAATTCTGCTATTAGAAAATGTGCTCGTGTTCAACTGATTAAAAACGGGAAGAAGATTGCTGCTTTTGTACCTAACGATGGCTGCCTCAATTACATTGAGGAAAATGTAAGTTAATCTAGTTTGCTTGTGCAGTGAATTTTAGTAATGTTTAATGTCTTTTGTTGACTTTCTTTGATTTCTAATTTTTAAATCAAAGCCAAATTTTAAAAACTAGTAAGCTGTTAGTAGACAAGGTTTTTGCATAAGGTTTCTTGGTTTCCCGAGGTTTAGAGTTGGTGTCAATTTAGTTCTTAAGGTTTCAAACGATACATTTTAGTCACGAAGAACGATTTAAATTCAACATTTGTTGACTAACCAAAAAATTAAGGTGGCATGACGTAACAAATCTTAGTAATTTTATTATAATGATTAGGCCCCTATGTCTCTCTTTCCAAAATTTACTCTAATGTTCGTCACATTTCTGATCTTGAACTTTTTAAAATTTCTCTAAATTTCTCTTTTAAACTTTTCTTTTTGGTACTTGAATAAAACTTGAAAATTGTATTTGCTTGCATAAATAAATAAATAAAATTTTAAAACTTGAAAATTGTACTTGCATAAATAAATCATATATCTGATTTTTATAATTAAAAATTATACTTAACATAAATAAATAACTTTAAATTAATATTGTTTTGTAAATTATATTTGAATTTAAGCATGATTTATTTTACAGGACGAGGTGTTTGATTGCGGGATTTGGACGTAAGGGTCATGCTGTGGGAGATATTCCTGGTGTTAGGTTCAAAGTTGTGAAAGTTTCTGGAGTTTCACTTTTGGCTCTCTTCAAAGAGAAGAAAGAGAAGCCAAGGTCCTAGAAATGCCTTCGCCAATCACTGGTTTTTTGTGCACTCTTAATTTAATTTAAATTCAAATCATCCATCAAATTTTGATGTACTCTTAATTTTTTAATTTGAACGCTTATGTATACAGGGGGTTGATTAGAATCATCTCGACGACGATGCTATTGATTCTTCTTCAAACAGCTTCAATGGACAATAACAAAATGCGATAA

mRNA sequence

ATGGGGAAGACTCGAGGAATGGGAGCAGGACGTAAGTTGAAGTCCCACCGTAGAAGGCAGAGATGGGCAGATAAGTCATATAAGAAATCCCATCTTGGTAATGAGTGGAAAAAGCCTTTTGCAGGGTCATCTCATGCGAAAGGAATTGTGCTCGAAAAGATTGGAATTGAAGCCAAGCAGCCAAATTCTGCTATTAGAAAATGTGCTCGTGTTCAACTGATTAAAAACGGGAAGAAGATTGCTGCTTTTGTACCTAACGATGGCTGCCTCAATTACATTGAGGAAAATGACGAGGTGTTTGATTGCGGGATTTGGACGGGGTTGATTAGAATCATCTCGACGACGATGCTATTGATTCTTCTTCAAACAGCTTCAATGGACAATAACAAAATGCGATAA

Coding sequence (CDS)

ATGGGGAAGACTCGAGGAATGGGAGCAGGACGTAAGTTGAAGTCCCACCGTAGAAGGCAGAGATGGGCAGATAAGTCATATAAGAAATCCCATCTTGGTAATGAGTGGAAAAAGCCTTTTGCAGGGTCATCTCATGCGAAAGGAATTGTGCTCGAAAAGATTGGAATTGAAGCCAAGCAGCCAAATTCTGCTATTAGAAAATGTGCTCGTGTTCAACTGATTAAAAACGGGAAGAAGATTGCTGCTTTTGTACCTAACGATGGCTGCCTCAATTACATTGAGGAAAATGACGAGGTGTTTGATTGCGGGATTTGGACGGGGTTGATTAGAATCATCTCGACGACGATGCTATTGATTCTTCTTCAAACAGCTTCAATGGACAATAACAAAATGCGATAA

Protein sequence

MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVFDCGIWTGLIRIISTTMLLILLQTASMDNNKMR
Homology
[Close]
BLAST of Csor.00g031670 vs. ExPASy Swiss-Prot
Match: P46297 (40S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.3e-50
Identity = 98/103 (95.15%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGA RKLK+HRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVFDCG 104
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEV   G
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAG 103

[Close]
BLAST of Csor.00g031670 vs. ExPASy Swiss-Prot
Match: Q9M5Z9 (40S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.0e-49
Identity = 97/103 (94.17%), Postives = 97/103 (94.17%), Query Frame = 0 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKT GMGA RKLKSHRR QRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVFDCG 104
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEV   G
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAG 103

[Close]
BLAST of Csor.00g031670 vs. ExPASy Swiss-Prot
Match: P49201 (40S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2)

HSP 1 Score: 190.3 bits (482), Expect = 1.4e-47
Identity = 95/103 (92.23%), Postives = 95/103 (92.23%), Query Frame = 0 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVFDCG 104
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEV   G
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAG 103

[Close]
BLAST of Csor.00g031670 vs. ExPASy Swiss-Prot
Match: Q9SF35 (40S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2)

HSP 1 Score: 181.4 bits (459), Expect = 6.6e-45
Identity = 92/103 (89.32%), Postives = 93/103 (90.29%), Query Frame = 0 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVFDCG 104
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEV   G
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAG 103

[Close]
BLAST of Csor.00g031670 vs. ExPASy Swiss-Prot
Match: Q9GRJ3 (40S ribosomal protein S23 OS=Lumbricus rubellus OX=35632 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 8.3e-40
Identity = 80/104 (76.92%), Postives = 86/104 (82.69%), Query Frame = 0 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 60
           MGK RG+   RKLK+HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAK 60

Query: 61  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVFDCG 104
           QPNSAIRKC RVQLIKNGKKI AFVP DGCLN+IEENDEV   G
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAG 104

[Close]
BLAST of Csor.00g031670 vs. NCBI nr
Match: KAG6578742.1 (40S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 263 bits (672), Expect = 1.47e-88
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVFDCGIWTGLIRIISTTMLLIL 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVFDCGIWTGLIRIISTTMLLIL
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVFDCGIWTGLIRIISTTMLLIL 120

Query: 121 LQTASMDNNKMR 132
           LQTASMDNNKMR
Sbjct: 121 LQTASMDNNKMR 132

[Close]
BLAST of Csor.00g031670 vs. NCBI nr
Match: XP_022938920.1 (40S ribosomal protein S23 isoform X1 [Cucurbita moschata] >XP_022993739.1 40S ribosomal protein S23 isoform X1 [Cucurbita maxima])

HSP 1 Score: 219 bits (557), Expect = 1.50e-70
Identity = 124/166 (74.70%), Postives = 124/166 (74.70%), Query Frame = 0 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVFDCGIWT-------------- 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEV   G                 
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 ---------------------GLIRIISTTMLLILLQTASMDNNKM 131
                                GLIRIIST MLLILLQTASMDNNKM
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRGLIRIIST-MLLILLQTASMDNNKM 165

[Close]
BLAST of Csor.00g031670 vs. NCBI nr
Match: XP_023549581.1 (40S ribosomal protein S23 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 216 bits (551), Expect = 1.23e-69
Identity = 123/166 (74.10%), Postives = 123/166 (74.10%), Query Frame = 0 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVFDCGIWT-------------- 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEV   G                 
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 ---------------------GLIRIISTTMLLILLQTASMDNNKM 131
                                GLIRIIST ML ILLQTASMDNNKM
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRGLIRIIST-MLSILLQTASMDNNKM 165

[Close]
BLAST of Csor.00g031670 vs. NCBI nr
Match: XP_016451136.1 (PREDICTED: 40S ribosomal protein S23-like [Nicotiana tabacum])

HSP 1 Score: 202 bits (514), Expect = 1.08e-64
Identity = 100/103 (97.09%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVFDCG 103
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEV   G
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAG 103

[Close]
BLAST of Csor.00g031670 vs. NCBI nr
Match: KAF8006095.1 (hypothetical protein BT93_K0406 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 202 bits (514), Expect = 1.27e-64
Identity = 100/103 (97.09%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVFDCG 103
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEV   G
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAG 103

[Close]
BLAST of Csor.00g031670 vs. ExPASy TrEMBL
Match: A0A6J1K0Y4 (40S ribosomal protein S23 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489652 PE=3 SV=1)

HSP 1 Score: 219 bits (557), Expect = 7.28e-71
Identity = 124/166 (74.70%), Postives = 124/166 (74.70%), Query Frame = 0 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVFDCGIWT-------------- 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEV   G                 
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 ---------------------GLIRIISTTMLLILLQTASMDNNKM 131
                                GLIRIIST MLLILLQTASMDNNKM
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRGLIRIIST-MLLILLQTASMDNNKM 165

[Close]
BLAST of Csor.00g031670 vs. ExPASy TrEMBL
Match: A0A6J1FL62 (40S ribosomal protein S23 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444988 PE=3 SV=1)

HSP 1 Score: 219 bits (557), Expect = 7.28e-71
Identity = 124/166 (74.70%), Postives = 124/166 (74.70%), Query Frame = 0 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVFDCGIWT-------------- 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEV   G                 
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 ---------------------GLIRIISTTMLLILLQTASMDNNKM 131
                                GLIRIIST MLLILLQTASMDNNKM
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRGLIRIIST-MLLILLQTASMDNNKM 165

[Close]
BLAST of Csor.00g031670 vs. ExPASy TrEMBL
Match: A0A1S3YFT2 (40S ribosomal protein S23-like OS=Nicotiana tabacum OX=4097 GN=LOC107775858 PE=3 SV=1)

HSP 1 Score: 202 bits (514), Expect = 5.22e-65
Identity = 100/103 (97.09%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVFDCG 103
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEV   G
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAG 103

[Close]
BLAST of Csor.00g031670 vs. ExPASy TrEMBL
Match: A0A1S4BTZ9 (40S ribosomal protein S23-like OS=Nicotiana tabacum OX=4097 GN=LOC107811880 PE=3 SV=1)

HSP 1 Score: 202 bits (514), Expect = 8.77e-65
Identity = 100/103 (97.09%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVFDCG 103
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEV   G
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAG 103

[Close]
BLAST of Csor.00g031670 vs. ExPASy TrEMBL
Match: A0A059A7I0 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K03200 PE=3 SV=1)

HSP 1 Score: 202 bits (514), Expect = 1.21e-64
Identity = 100/103 (97.09%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVFDCG 103
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEV   G
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAG 103

[Close]
BLAST of Csor.00g031670 vs. TAIR 10
Match: AT5G02960.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 190.3 bits (482), Expect = 1.0e-48
Identity = 95/103 (92.23%), Postives = 95/103 (92.23%), Query Frame = 0 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVFDCG 104
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEV   G
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAG 103

[Close]
BLAST of Csor.00g031670 vs. TAIR 10
Match: AT3G09680.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 181.4 bits (459), Expect = 4.7e-46
Identity = 92/103 (89.32%), Postives = 93/103 (90.29%), Query Frame = 0 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVFDCG 104
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEV   G
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAG 103

The following BLAST results are available for this feature:
BLAST of Csor.00g031670 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P462972.3e-5095.1540S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1[more]
Q9M5Z92.0e-4994.1740S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1[more]
P492011.4e-4792.2340S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2[more]
Q9SF356.6e-4589.3240S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2[more]
Q9GRJ38.3e-4076.9240S ribosomal protein S23 OS=Lumbricus rubellus OX=35632 GN=RPS23 PE=2 SV=1[more]
BLAST of Csor.00g031670 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6578742.11.47e-88100.0040S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022938920.11.50e-7074.7040S ribosomal protein S23 isoform X1 [Cucurbita moschata] >XP_022993739.1 40S ri... [more]
XP_023549581.11.23e-6974.1040S ribosomal protein S23 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_016451136.11.08e-6497.09PREDICTED: 40S ribosomal protein S23-like [Nicotiana tabacum][more]
KAF8006095.11.27e-6497.09hypothetical protein BT93_K0406 [Corymbia citriodora subsp. variegata][more]
BLAST of Csor.00g031670 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K0Y47.28e-7174.7040S ribosomal protein S23 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489652... [more]
A0A6J1FL627.28e-7174.7040S ribosomal protein S23 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1114449... [more]
A0A1S3YFT25.22e-6597.0940S ribosomal protein S23-like OS=Nicotiana tabacum OX=4097 GN=LOC107775858 PE=3... [more]
A0A1S4BTZ98.77e-6597.0940S ribosomal protein S23-like OS=Nicotiana tabacum OX=4097 GN=LOC107811880 PE=3... [more]
A0A059A7I01.21e-6497.09Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K03200 PE=3 SV... [more]
BLAST of Csor.00g031670 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G02960.11.0e-4892.23Ribosomal protein S12/S23 family protein [more]
AT3G09680.14.7e-4689.32Ribosomal protein S12/S23 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 31..104
e-value: 2.6E-29
score: 101.1
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 1..103
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 59..66
NoneNo IPR availableGENE3D2.40.50.140coord: 25..109
e-value: 5.9E-28
score: 98.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..25
NoneNo IPR availablePANTHERPTHR11652:SF5840S RIBOSOMAL PROTEIN S23coord: 1..103
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 20..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g031670.m01Csor.00g031670.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0016020 membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome