Csor.00g031420 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g031420
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr16: 6026695 .. 6027180 (-)
RNA-Seq Expression	Csor.00g031420
Synteny	Csor.00g031420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGGTTGAAGAGATCCGAAGTTGTTCTTGTTTTGTGCCTCACCCTTCTTCTTCTAATAACGCCTCTTCTTTCCTCATCCCTTAGACCCACATATCTCTACTTCGTCTTCAACCTCCTCATCCTTGGCCTTCTCTCCTCTGCCTTCCCAAATAATGCTCACAGCCCCAACACCACCCCTTCCCCTCACACCTCCGCCAACAACCACAGGGCTCTAGAGAAGGCCCATTCCGACAACATTCCCCCTCCCAATCCCAAAATCGAATCTCTCAACAAGTGTCCCTCTGCTTCCACCATTTTCTTCATCGGAGATGGCGACAGTGAGGAGGCGGAAGAGGAGGCTTCTGGCGGCGCCGCCGGTGGAAATGGGCAAGACTTGTTTGCCCAAGCTGAGACGTTTATTGGGAACTTCTATAAGCAGTTGGAGATGCAGAAACAGGAGTCTTGGAAGAATGTTCATGGTTTCTATCGGAAACCCTTTTGA

mRNA sequence

ATGAGCAGGTTGAAGAGATCCGAAGTTGTTCTTGTTTTGTGCCTCACCCTTCTTCTTCTAATAACGCCTCTTCTTTCCTCATCCCTTAGACCCACATATCTCTACTTCGTCTTCAACCTCCTCATCCTTGGCCTTCTCTCCTCTGCCTTCCCAAATAATGCTCACAGCCCCAACACCACCCCTTCCCCTCACACCTCCGCCAACAACCACAGGGCTCTAGAGAAGGCCCATTCCGACAACATTCCCCCTCCCAATCCCAAAATCGAATCTCTCAACAAGTGTCCCTCTGCTTCCACCATTTTCTTCATCGGAGATGGCGACAGTGAGGAGGCGGAAGAGGAGGCTTCTGGCGGCGCCGCCGGTGGAAATGGGCAAGACTTGTTTGCCCAAGCTGAGACGTTTATTGGGAACTTCTATAAGCAGTTGGAGATGCAGAAACAGGAGTCTTGGAAGAATGTTCATGGTTTCTATCGGAAACCCTTTTGA

Coding sequence (CDS)

ATGAGCAGGTTGAAGAGATCCGAAGTTGTTCTTGTTTTGTGCCTCACCCTTCTTCTTCTAATAACGCCTCTTCTTTCCTCATCCCTTAGACCCACATATCTCTACTTCGTCTTCAACCTCCTCATCCTTGGCCTTCTCTCCTCTGCCTTCCCAAATAATGCTCACAGCCCCAACACCACCCCTTCCCCTCACACCTCCGCCAACAACCACAGGGCTCTAGAGAAGGCCCATTCCGACAACATTCCCCCTCCCAATCCCAAAATCGAATCTCTCAACAAGTGTCCCTCTGCTTCCACCATTTTCTTCATCGGAGATGGCGACAGTGAGGAGGCGGAAGAGGAGGCTTCTGGCGGCGCCGCCGGTGGAAATGGGCAAGACTTGTTTGCCCAAGCTGAGACGTTTATTGGGAACTTCTATAAGCAGTTGGAGATGCAGAAACAGGAGTCTTGGAAGAATGTTCATGGTTTCTATCGGAAACCCTTTTGA

Protein sequence

MSRLKRSEVVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTTPSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIGDGDSEEAEEEASGGAAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGFYRKPF

Homology

[Close]

BLAST of Csor.00g031420 vs. NCBI nr
Match: KAG6577458.1 (hypothetical protein SDJN03_25032, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 313 bits (803), Expect = 1.36e-107
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MSRLKRSEVVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTT 60
           MSRLKRSEVVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTT
Sbjct: 1   MSRLKRSEVVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTT 60

Query: 61  PSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIGDGDSEEAEEEASGGAA 120
           PSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIGDGDSEEAEEEASGGAA
Sbjct: 61  PSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIGDGDSEEAEEEASGGAA 120

Query: 121 GGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGFYRKPF 161
           GGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGFYRKPF
Sbjct: 121 GGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGFYRKPF 161

[Close]

BLAST of Csor.00g031420 vs. NCBI nr
Match: KAG7015529.1 (hypothetical protein SDJN02_23165, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 296 bits (758), Expect = 8.05e-101
Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MSRLKRSEVVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTT 60
           MSRLKRSEVVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTT
Sbjct: 1   MSRLKRSEVVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTT 60

Query: 61  PSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIGDGDSEEAEEEASGGAA 120
           PSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPS STIFFIGDGDSEEAEEEASGGAA
Sbjct: 61  PSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSPSTIFFIGDGDSEEAEEEASGGAA 120

Query: 121 GGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVH 154
           GGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVH
Sbjct: 121 GGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVH 154

[Close]

BLAST of Csor.00g031420 vs. NCBI nr
Match: XP_022932284.1 (uncharacterized protein LOC111438634 [Cucurbita moschata])

HSP 1 Score: 288 bits (736), Expect = 7.99e-97
Identity = 149/152 (98.03%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MSRLKRSEVVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTT 60
           MSRLKRSE+VLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTT
Sbjct: 1   MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTT 60

Query: 61  PSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIGDGDSEEAEEEASGGAA 120
           PSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIGD DSEEAEEEASGG A
Sbjct: 61  PSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIGDVDSEEAEEEASGGGA 120

Query: 121 GGNGQDLFAQAETFIGNFYKQLEMQKQESWKN 152
           GGNGQDLFAQAETFIGNFYKQLEMQKQESWKN
Sbjct: 121 GGNGQDLFAQAETFIGNFYKQLEMQKQESWKN 152

[Close]

BLAST of Csor.00g031420 vs. NCBI nr
Match: KAA0055857.1 (putative LIM and calponin domains-containing protein 1 [Cucumis melo var. makuwa] >TYK24081.1 putative LIM and calponin domains-containing protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 185 bits (469), Expect = 2.26e-56
Identity = 107/185 (57.84%), Postives = 134/185 (72.43%), Query Frame = 0


Query: 1   MSRLKRSEVVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLIL------GLLSSAFPNNA 60
           M++ K+SE++++L LT+LL+ITPLLSSSLRPTYLYF+FNLLI+      GLL+   P++ 
Sbjct: 2   MNKFKKSEILVLLGLTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLNDPPPDHQ 61

Query: 61  HSPN--TTPSPHTSANN--------HRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIG 120
              N  +  SP T A++        HRALEKAHSD I   N K+ESL KCPSAS+IF+IG
Sbjct: 62  DKTNKLSLTSPETVASSTETSPLKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYIG 121

Query: 121 DGDSE--------EAEEEASGGAAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGF 161
           +GDSE        + EEE  GG    NGQ+LFAQAETFIGNFYKQL+MQK+ESWKN+HGF
Sbjct: 122 EGDSEAEETTGIEDMEEEVVGGGGNNNGQELFAQAETFIGNFYKQLKMQKEESWKNIHGF 181

[Close]

BLAST of Csor.00g031420 vs. NCBI nr
Match: KGN56109.1 (hypothetical protein Csa_011766 [Cucumis sativus])

HSP 1 Score: 182 bits (462), Expect = 2.79e-55
Identity = 108/187 (57.75%), Postives = 134/187 (71.66%), Query Frame = 0


Query: 1   MSRLKRSEVVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLIL------GLLSSAFPNNA 60
           M++ K+SE+V++L LT+LL+ITPLLSSSLRPTYLYF+FNLLI+      GLL+   P++ 
Sbjct: 2   MNKFKKSEIVVLLSLTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLNDPPPDHQ 61

Query: 61  HSPN--TTPSPHTSANN--------HRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIG 120
              N  +  SP T A++        HRALEKAHSD I   N K+ESL KCPSAS+IF+IG
Sbjct: 62  DKTNKLSLTSPETVASSTETSALKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYIG 121

Query: 121 DGDSE---------EAEEEAS-GGAAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVH 161
           +GDSE         + EEE   GG    NGQ+LFAQAETFIGNFYKQL+MQK+ESWKN+H
Sbjct: 122 EGDSEAEETTGTIEDGEEEVVVGGGGNNNGQELFAQAETFIGNFYKQLKMQKEESWKNIH 181

[Close]

BLAST of Csor.00g031420 vs. ExPASy TrEMBL
Match: A0A6J1EWK2 (uncharacterized protein LOC111438634 OS=Cucurbita moschata OX=3662 GN=LOC111438634 PE=4 SV=1)

HSP 1 Score: 288 bits (736), Expect = 3.87e-97
Identity = 149/152 (98.03%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MSRLKRSEVVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTT 60
           MSRLKRSE+VLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTT
Sbjct: 1   MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTT 60

Query: 61  PSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIGDGDSEEAEEEASGGAA 120
           PSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIGD DSEEAEEEASGG A
Sbjct: 61  PSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIGDVDSEEAEEEASGGGA 120

Query: 121 GGNGQDLFAQAETFIGNFYKQLEMQKQESWKN 152
           GGNGQDLFAQAETFIGNFYKQLEMQKQESWKN
Sbjct: 121 GGNGQDLFAQAETFIGNFYKQLEMQKQESWKN 152

[Close]

BLAST of Csor.00g031420 vs. ExPASy TrEMBL
Match: A0A5D3DK86 (Putative LIM and calponin domains-containing protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00520 PE=4 SV=1)

HSP 1 Score: 185 bits (469), Expect = 1.10e-56
Identity = 107/185 (57.84%), Postives = 134/185 (72.43%), Query Frame = 0


Query: 1   MSRLKRSEVVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLIL------GLLSSAFPNNA 60
           M++ K+SE++++L LT+LL+ITPLLSSSLRPTYLYF+FNLLI+      GLL+   P++ 
Sbjct: 2   MNKFKKSEILVLLGLTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLNDPPPDHQ 61

Query: 61  HSPN--TTPSPHTSANN--------HRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIG 120
              N  +  SP T A++        HRALEKAHSD I   N K+ESL KCPSAS+IF+IG
Sbjct: 62  DKTNKLSLTSPETVASSTETSPLKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYIG 121

Query: 121 DGDSE--------EAEEEASGGAAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGF 161
           +GDSE        + EEE  GG    NGQ+LFAQAETFIGNFYKQL+MQK+ESWKN+HGF
Sbjct: 122 EGDSEAEETTGIEDMEEEVVGGGGNNNGQELFAQAETFIGNFYKQLKMQKEESWKNIHGF 181

[Close]

BLAST of Csor.00g031420 vs. ExPASy TrEMBL
Match: A0A0A0L509 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G074480 PE=4 SV=1)

HSP 1 Score: 182 bits (462), Expect = 1.35e-55
Identity = 108/187 (57.75%), Postives = 134/187 (71.66%), Query Frame = 0


Query: 1   MSRLKRSEVVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLIL------GLLSSAFPNNA 60
           M++ K+SE+V++L LT+LL+ITPLLSSSLRPTYLYF+FNLLI+      GLL+   P++ 
Sbjct: 2   MNKFKKSEIVVLLSLTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLNDPPPDHQ 61

Query: 61  HSPN--TTPSPHTSANN--------HRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIG 120
              N  +  SP T A++        HRALEKAHSD I   N K+ESL KCPSAS+IF+IG
Sbjct: 62  DKTNKLSLTSPETVASSTETSALKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYIG 121

Query: 121 DGDSE---------EAEEEAS-GGAAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVH 161
           +GDSE         + EEE   GG    NGQ+LFAQAETFIGNFYKQL+MQK+ESWKN+H
Sbjct: 122 EGDSEAEETTGTIEDGEEEVVVGGGGNNNGQELFAQAETFIGNFYKQLKMQKEESWKNIH 181

[Close]

BLAST of Csor.00g031420 vs. ExPASy TrEMBL
Match: U7E225 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_0040s00200g PE=4 SV=1)

HSP 1 Score: 139 bits (351), Expect = 1.36e-38
Identity = 87/203 (42.86%), Postives = 120/203 (59.11%), Query Frame = 0


Query: 1   MSRLKRSEVVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLIL------GLLSSAF---- 60
           MS+LKRS+++++  L  LL +TPL+SSSLRP YLYF+ NLLI+      GL+S+AF    
Sbjct: 1   MSKLKRSQILMLSILAALLFVTPLISSSLRPKYLYFIMNLLIIALGVEAGLISAAFSKPV 60

Query: 61  ----------------------PNNAHSPNTTPSPHTSANNHRALEKAHSDNIPPPNPKI 120
                                 P + +  +TT   + +    + LEK+ S+NI     K+
Sbjct: 61  EQYKKHAVVPLTTKPARSFVMAPPDQYQASTTDQANEAPAKAKVLEKSSSENIVSTVVKV 120

Query: 121 E-SLNKCPSASTIFFIGDGD---------SEEAEEEASGGAAGGNGQDLFAQAETFIGNF 161
           +  + KCPS  ++FFIG GD         +EE EEEA G   G +GQ+LF +AETFIGNF
Sbjct: 121 DHKVKKCPSLPSLFFIGGGDHGTKAVEDVTEEHEEEAEGEVGGISGQELFTKAETFIGNF 180

[Close]

BLAST of Csor.00g031420 vs. ExPASy TrEMBL
Match: B9I151 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G087000 PE=4 SV=1)

HSP 1 Score: 139 bits (351), Expect = 1.36e-38
Identity = 87/203 (42.86%), Postives = 120/203 (59.11%), Query Frame = 0


Query: 1   MSRLKRSEVVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLIL------GLLSSAF---- 60
           MS+LKRS+++++  L  LL +TPL+SSSLRP YLYF+ NLLI+      GL+S+AF    
Sbjct: 1   MSKLKRSQILMLSILAALLFVTPLISSSLRPKYLYFIMNLLIIALGVEAGLISAAFSKPV 60

Query: 61  ----------------------PNNAHSPNTTPSPHTSANNHRALEKAHSDNIPPPNPKI 120
                                 P + +  +TT   + +    + LEK+ S+NI     K+
Sbjct: 61  EQYKKHAVVPLTTKPARSFVTAPPDQYQASTTDQANEAPAKAKVLEKSSSENIVSTVVKV 120

Query: 121 E-SLNKCPSASTIFFIGDGD---------SEEAEEEASGGAAGGNGQDLFAQAETFIGNF 161
           +  + KCPS  ++FFIG GD         +EE EEEA G   G +GQ+LF +AETFIGNF
Sbjct: 121 DHKVKKCPSLPSLFFIGGGDHGTKAVEDVTEEHEEEAEGEVGGISGQELFTKAETFIGNF 180

The following BLAST results are available for this feature:

BLAST of Csor.00g031420 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g031420 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577458.1	1.36e-107	100.00	hypothetical protein SDJN03_25032, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7015529.1	8.05e-101	99.35	hypothetical protein SDJN02_23165, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022932284.1	7.99e-97	98.03	uncharacterized protein LOC111438634 [Cucurbita moschata]	[more]
KAA0055857.1	2.26e-56	57.84	putative LIM and calponin domains-containing protein 1 [Cucumis melo var. makuwa...	[more]
KGN56109.1	2.79e-55	57.75	hypothetical protein Csa_011766 [Cucumis sativus]	[more]

BLAST of Csor.00g031420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EWK2	3.87e-97	98.03	uncharacterized protein LOC111438634 OS=Cucurbita moschata OX=3662 GN=LOC1114386...	[more]
A0A5D3DK86	1.10e-56	57.84	Putative LIM and calponin domains-containing protein 1 OS=Cucumis melo var. maku...	[more]
A0A0A0L509	1.35e-55	57.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G074480 PE=4 SV=1	[more]
U7E225	1.36e-38	42.86	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_0040s00200g PE=4...	[more]
B9I151	1.36e-38	42.86	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G087000 PE=4 ...	[more]

BLAST of Csor.00g031420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 125..155 e-value: 4.1E-10 score: 39.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..85
None	No IPR available	PANTHER	PTHR36887	OS01G0532300 PROTEIN	coord: 52..159
None	No IPR available	PANTHER	PTHR36887	OS01G0532300 PROTEIN	coord: 1..47
None	No IPR available	PANTHER	PTHR36887:SF1	OS01G0532300 PROTEIN	coord: 52..159
None	No IPR available	PANTHER	PTHR36887:SF1	OS01G0532300 PROTEIN	coord: 1..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g031420.m01	Csor.00g031420.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane