Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGATTACTTCTCTTTCTCGAAACCTCCGTGATTTCTCCCACCCTTACTTCTACTCTATTTACTCATTTGCTCCTCATTCACCATTTCCCTCGTCCTCGCCTTCCAAGCATTTCGGGCGTTTTATTCGATTTTATACCGCACCGACATCCGATTCGGCTGCTCGTTCTCCCTTATTCTGCAATTCAACTTCCCAATCTGTGCCTTCATTGTGTTTGTTTGAGAGATGCAATGGCGTAACCAAGGATTTGAATCTTGGATTGTTTCGTCCCCACTACAGAAGCTGCCGCCGTTCTTTTTCCTCCGATTCGTTTGAGAAGCCCCAGTTTGGAACTGGTGAATTGAATGTGTTTAAACCGAATGTGACGTCCAATCAATTTTGGGATATTATAAATATCATTCGGGCAAATCAGGAGGATTTGGAGTCCAAGTTGGATTCGTTGAATGTAAGTTTCACTAACGCCTTAGTTGCTCAGATTTTTCGGGTGCTGAATAATCATAAGGTTTCTGCCTTTCGTTTTTTCAACTGGGTTAGAGTTCAGTCCTGTAAATTTCCTTGTAATTCTGATATTTATAGTCTACTTATTGATAATTTTGGTAGATTAGATGA
mRNA sequence
ATGGGGATTACTTCTCTTTCTCGAAACCTCCGTGATTTCTCCCACCCTTACTTCTACTCTATTTACTCATTTGCTCCTCATTCACCATTTCCCTCGTCCTCGCCTTCCAAGCATTTCGGGCGTTTTATTCGATTTTATACCGCACCGACATCCGATTCGGCTGCTCGTTCTCCCTTATTCTGCAATTCAACTTCCCAATCTGTGCCTTCATTGTGTTTGTTTGAGAGATGCAATGGCGTAACCAAGGATTTGAATCTTGGATTGTTTCGTCCCCACTACAGAAGCTGCCGCCGTTCTTTTTCCTCCGATTCGTTTGAGAAGCCCCAGTTTGGAACTGGTGAATTGAATGTGTTTAAACCGAATGTGACGTCCAATCAATTTTGGGATATTATAAATATCATTCGGGCAAATCAGGAGGATTTGGAGTCCAAGTTGGATTCGTTGAATATTAGATGA
Coding sequence (CDS)
ATGGGGATTACTTCTCTTTCTCGAAACCTCCGTGATTTCTCCCACCCTTACTTCTACTCTATTTACTCATTTGCTCCTCATTCACCATTTCCCTCGTCCTCGCCTTCCAAGCATTTCGGGCGTTTTATTCGATTTTATACCGCACCGACATCCGATTCGGCTGCTCGTTCTCCCTTATTCTGCAATTCAACTTCCCAATCTGTGCCTTCATTGTGTTTGTTTGAGAGATGCAATGGCGTAACCAAGGATTTGAATCTTGGATTGTTTCGTCCCCACTACAGAAGCTGCCGCCGTTCTTTTTCCTCCGATTCGTTTGAGAAGCCCCAGTTTGGAACTGGTGAATTGAATGTGTTTAAACCGAATGTGACGTCCAATCAATTTTGGGATATTATAAATATCATTCGGGCAAATCAGGAGGATTTGGAGTCCAAGTTGGATTCGTTGAATATTAGATGA
Protein sequence
MGITSLSRNLRDFSHPYFYSIYSFAPHSPFPSSSPSKHFGRFIRFYTAPTSDSAARSPLFCNSTSQSVPSLCLFERCNGVTKDLNLGLFRPHYRSCRRSFSSDSFEKPQFGTGELNVFKPNVTSNQFWDIINIIRANQEDLESKLDSLNIR
Homology
BLAST of Csor.00g031260 vs. NCBI nr
Match:
KAG6577474.1 (hypothetical protein SDJN03_25048, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 311 bits (797), Expect = 5.25e-107
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0
Query: 1 MGITSLSRNLRDFSHPYFYSIYSFAPHSPFPSSSPSKHFGRFIRFYTAPTSDSAARSPLF 60
MGITSLSRNLRDFSHPYFYSIYSFAPHSPFPSSSPSKHFGRFIRFYTAPTSDSAARSPLF
Sbjct: 1 MGITSLSRNLRDFSHPYFYSIYSFAPHSPFPSSSPSKHFGRFIRFYTAPTSDSAARSPLF 60
Query: 61 CNSTSQSVPSLCLFERCNGVTKDLNLGLFRPHYRSCRRSFSSDSFEKPQFGTGELNVFKP 120
CNSTSQSVPSLCLFERCNGVTKDLNLGLFRPHYRSCRRSFSSDSFEKPQFGTGELNVFKP
Sbjct: 61 CNSTSQSVPSLCLFERCNGVTKDLNLGLFRPHYRSCRRSFSSDSFEKPQFGTGELNVFKP 120
Query: 121 NVTSNQFWDIINIIRANQEDLESKLDSLNIR 151
NVTSNQFWDIINIIRANQEDLESKLDSLNIR
Sbjct: 121 NVTSNQFWDIINIIRANQEDLESKLDSLNIR 151
BLAST of Csor.00g031260 vs. NCBI nr
Match:
KAG7015541.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 306 bits (785), Expect = 3.20e-100
Identity = 148/150 (98.67%), Postives = 149/150 (99.33%), Query Frame = 0
Query: 1 MGITSLSRNLRDFSHPYFYSIYSFAPHSPFPSSSPSKHFGRFIRFYTAPTSDSAARSPLF 60
MGITSLSRNLRDFSHPYFYSIYSFAPHSPFPSSSPSKHFGRFIRFYTAPTSDSAARSPL
Sbjct: 1 MGITSLSRNLRDFSHPYFYSIYSFAPHSPFPSSSPSKHFGRFIRFYTAPTSDSAARSPLL 60
Query: 61 CNSTSQSVPSLCLFERCNGVTKDLNLGLFRPHYRSCRRSFSSDSFEKPQFGTGELNVFKP 120
CNSTSQSVPSLCLFERCNGVTKDLNLGLFRPHYRSCRRSFSSDSFEKPQFGTGELNVFKP
Sbjct: 61 CNSTSQSVPSLCLFERCNGVTKDLNLGLFRPHYRSCRRSFSSDSFEKPQFGTGELNVFKP 120
Query: 121 NVTSNQFWDIINIIRANQEDLESKLDSLNI 150
NVTSNQFWDIINIIRANQEDLESKLDSLN+
Sbjct: 121 NVTSNQFWDIINIIRANQEDLESKLDSLNV 150
BLAST of Csor.00g031260 vs. NCBI nr
Match:
XP_022932243.1 (pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Cucurbita moschata])
HSP 1 Score: 306 bits (785), Expect = 3.20e-100
Identity = 148/150 (98.67%), Postives = 149/150 (99.33%), Query Frame = 0
Query: 1 MGITSLSRNLRDFSHPYFYSIYSFAPHSPFPSSSPSKHFGRFIRFYTAPTSDSAARSPLF 60
MGITSLSRNLRDFSHPYFYSIYSFAPHSPFPSSSPSKHFGRFIRFYTAPTSDSAARSPL
Sbjct: 1 MGITSLSRNLRDFSHPYFYSIYSFAPHSPFPSSSPSKHFGRFIRFYTAPTSDSAARSPLL 60
Query: 61 CNSTSQSVPSLCLFERCNGVTKDLNLGLFRPHYRSCRRSFSSDSFEKPQFGTGELNVFKP 120
CNSTSQSVPSLCLFERCNGVTKDLNLGLFRPHYRSCRRSFSSDSFEKPQFGTGELNVFKP
Sbjct: 61 CNSTSQSVPSLCLFERCNGVTKDLNLGLFRPHYRSCRRSFSSDSFEKPQFGTGELNVFKP 120
Query: 121 NVTSNQFWDIINIIRANQEDLESKLDSLNI 150
NVTSNQFWDIINIIRANQEDLESKLDSLN+
Sbjct: 121 NVTSNQFWDIINIIRANQEDLESKLDSLNV 150
BLAST of Csor.00g031260 vs. NCBI nr
Match:
XP_023007595.1 (pentatricopeptide repeat-containing protein At1g09820-like [Cucurbita maxima])
HSP 1 Score: 301 bits (770), Expect = 5.85e-98
Identity = 145/150 (96.67%), Postives = 147/150 (98.00%), Query Frame = 0
Query: 1 MGITSLSRNLRDFSHPYFYSIYSFAPHSPFPSSSPSKHFGRFIRFYTAPTSDSAARSPLF 60
MGITSLSRNLRDFSHPYFYSIYSFAPHSPFPSSSPSKHFGRFIRFYTAPTSDSAARSPL
Sbjct: 1 MGITSLSRNLRDFSHPYFYSIYSFAPHSPFPSSSPSKHFGRFIRFYTAPTSDSAARSPLL 60
Query: 61 CNSTSQSVPSLCLFERCNGVTKDLNLGLFRPHYRSCRRSFSSDSFEKPQFGTGELNVFKP 120
CNST QSVPSLCLFERCNGVTKDLNLGLFRPHYRSCRRSFSSDSFEKPQFGTGELNVF P
Sbjct: 61 CNSTPQSVPSLCLFERCNGVTKDLNLGLFRPHYRSCRRSFSSDSFEKPQFGTGELNVFNP 120
Query: 121 NVTSNQFWDIINIIRANQEDLESKLDSLNI 150
NVTSNQFWDIINIIRANQE+LESKLDSLN+
Sbjct: 121 NVTSNQFWDIINIIRANQENLESKLDSLNV 150
BLAST of Csor.00g031260 vs. NCBI nr
Match:
XP_023552923.1 (pentatricopeptide repeat-containing protein At1g09820-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 294 bits (752), Expect = 3.02e-95
Identity = 143/150 (95.33%), Postives = 144/150 (96.00%), Query Frame = 0
Query: 1 MGITSLSRNLRDFSHPYFYSIYSFAPHSPFPSSSPSKHFGRFIRFYTAPTSDSAARSPLF 60
MGITSLSRNLRDFSHPYFYSIYSFAP SPFPSSSPSKHFGRFIRFYTAPTS SAARSPL
Sbjct: 1 MGITSLSRNLRDFSHPYFYSIYSFAPPSPFPSSSPSKHFGRFIRFYTAPTSHSAARSPLL 60
Query: 61 CNSTSQSVPSLCLFERCNGVTKDLNLGLFRPHYRSCRRSFSSDSFEKPQFGTGELNVFKP 120
CNSTSQSVPSLCL ERCNGV KDLNLGLFRPHYRSCRRSFSSDSFEKPQFGTGELNVFKP
Sbjct: 61 CNSTSQSVPSLCLLERCNGVAKDLNLGLFRPHYRSCRRSFSSDSFEKPQFGTGELNVFKP 120
Query: 121 NVTSNQFWDIINIIRANQEDLESKLDSLNI 150
NVTSNQFWDIINIIR NQEDLESKLDSLN+
Sbjct: 121 NVTSNQFWDIINIIRENQEDLESKLDSLNV 150
BLAST of Csor.00g031260 vs. ExPASy TrEMBL
Match:
A0A6J1F148 (pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111438608 PE=4 SV=1)
HSP 1 Score: 306 bits (785), Expect = 1.55e-100
Identity = 148/150 (98.67%), Postives = 149/150 (99.33%), Query Frame = 0
Query: 1 MGITSLSRNLRDFSHPYFYSIYSFAPHSPFPSSSPSKHFGRFIRFYTAPTSDSAARSPLF 60
MGITSLSRNLRDFSHPYFYSIYSFAPHSPFPSSSPSKHFGRFIRFYTAPTSDSAARSPL
Sbjct: 1 MGITSLSRNLRDFSHPYFYSIYSFAPHSPFPSSSPSKHFGRFIRFYTAPTSDSAARSPLL 60
Query: 61 CNSTSQSVPSLCLFERCNGVTKDLNLGLFRPHYRSCRRSFSSDSFEKPQFGTGELNVFKP 120
CNSTSQSVPSLCLFERCNGVTKDLNLGLFRPHYRSCRRSFSSDSFEKPQFGTGELNVFKP
Sbjct: 61 CNSTSQSVPSLCLFERCNGVTKDLNLGLFRPHYRSCRRSFSSDSFEKPQFGTGELNVFKP 120
Query: 121 NVTSNQFWDIINIIRANQEDLESKLDSLNI 150
NVTSNQFWDIINIIRANQEDLESKLDSLN+
Sbjct: 121 NVTSNQFWDIINIIRANQEDLESKLDSLNV 150
BLAST of Csor.00g031260 vs. ExPASy TrEMBL
Match:
A0A6J1L3E8 (pentatricopeptide repeat-containing protein At1g09820-like OS=Cucurbita maxima OX=3661 GN=LOC111500167 PE=4 SV=1)
HSP 1 Score: 301 bits (770), Expect = 2.83e-98
Identity = 145/150 (96.67%), Postives = 147/150 (98.00%), Query Frame = 0
Query: 1 MGITSLSRNLRDFSHPYFYSIYSFAPHSPFPSSSPSKHFGRFIRFYTAPTSDSAARSPLF 60
MGITSLSRNLRDFSHPYFYSIYSFAPHSPFPSSSPSKHFGRFIRFYTAPTSDSAARSPL
Sbjct: 1 MGITSLSRNLRDFSHPYFYSIYSFAPHSPFPSSSPSKHFGRFIRFYTAPTSDSAARSPLL 60
Query: 61 CNSTSQSVPSLCLFERCNGVTKDLNLGLFRPHYRSCRRSFSSDSFEKPQFGTGELNVFKP 120
CNST QSVPSLCLFERCNGVTKDLNLGLFRPHYRSCRRSFSSDSFEKPQFGTGELNVF P
Sbjct: 61 CNSTPQSVPSLCLFERCNGVTKDLNLGLFRPHYRSCRRSFSSDSFEKPQFGTGELNVFNP 120
Query: 121 NVTSNQFWDIINIIRANQEDLESKLDSLNI 150
NVTSNQFWDIINIIRANQE+LESKLDSLN+
Sbjct: 121 NVTSNQFWDIINIIRANQENLESKLDSLNV 150
BLAST of Csor.00g031260 vs. ExPASy TrEMBL
Match:
A0A5D3D9T8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003980 PE=4 SV=1)
HSP 1 Score: 197 bits (501), Expect = 4.39e-58
Identity = 106/151 (70.20%), Postives = 116/151 (76.82%), Query Frame = 0
Query: 1 MGITSLSRNLRDFSHPYFYSIYSFAPHSPFPSSSPSKHFGRFIRFYTAPTSDSAARSPLF 60
M I LSRNLR+FS+PYFYSIYSFAP+SPFP + F RFYT P SDSAA S L
Sbjct: 1 MEIPCLSRNLRNFSNPYFYSIYSFAPYSPFPL------YRFFSRFYTTPASDSAAGSSLI 60
Query: 61 CNSTSQSVPSLCLFERCNGVTKDLNLGLFRPHYRSCRRSFSSDSFEKPQFGTGELNVFKP 120
CNSTSQSV SLCLFERCNG T DLNL LFR HYRSCR SFSS S +K Q GTG LN+ KP
Sbjct: 61 CNSTSQSVSSLCLFERCNGRTSDLNLALFRHHYRSCR-SFSSFSLKKLQRGTGNLNLSKP 120
Query: 121 NVTSNQFWDIINIIRANQEDLESKLDSLNIR 151
TS +FW II+II+ NQEDLESKLDSLN+R
Sbjct: 121 IATSEKFWQIIDIIQINQEDLESKLDSLNVR 144
BLAST of Csor.00g031260 vs. ExPASy TrEMBL
Match:
A0A0A0L3E7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G637180 PE=4 SV=1)
HSP 1 Score: 194 bits (494), Expect = 4.68e-57
Identity = 109/151 (72.19%), Postives = 114/151 (75.50%), Query Frame = 0
Query: 1 MGITSLSRNLRDFSHPYFYSIYSFAPHSPFPSSSPSKHFGRFIRFYTAPTSDSAARSPLF 60
M I LSRNLR+FS+PYFYSIYSFAP SPF RF RFYT SDSAA S L
Sbjct: 1 MEIPCLSRNLRNFSNPYFYSIYSFAPRSPFL-------LYRFSRFYTILASDSAAGSSLI 60
Query: 61 CNSTSQSVPSLCLFERCNGVTKDLNLGLFRPHYRSCRRSFSSDSFEKPQFGTGELNVFKP 120
CNSTSQSVPSLCLFERCNG T DLNL LFR HYRSCR +FSS S EK Q GTG LNV K
Sbjct: 61 CNSTSQSVPSLCLFERCNGGTSDLNLALFRHHYRSCR-AFSSFSLEKRQCGTGNLNVSKR 120
Query: 121 NVTSNQFWDIINIIRANQEDLESKLDSLNIR 151
NVTSNQ +IINIIR NQEDLESKLDS N+R
Sbjct: 121 NVTSNQLSNIINIIRENQEDLESKLDSPNVR 143
BLAST of Csor.00g031260 vs. ExPASy TrEMBL
Match:
A0A6J1CJ38 (pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111012070 PE=4 SV=1)
HSP 1 Score: 142 bits (358), Expect = 5.79e-37
Identity = 91/177 (51.41%), Postives = 103/177 (58.19%), Query Frame = 0
Query: 1 MGITSLSRNLRDFSHPYFYSIYSFAPHSPFPSSSPSKH--------------FGRFIRFY 60
M I+ L R LR+FS+PY IYSF+ SP+PS S H F FY
Sbjct: 1 MEISGLPRKLRNFSNPY--CIYSFSSQSPYPSCSTFSHPRTLATPTDPSSIILFNFSPFY 60
Query: 61 TAPTSDSA------ARSPLFCNSTSQSVPSLCLFERCNGVTKDLNLGLF-RPHYRSCRRS 120
+ SDSA A L CN+ S S PSLCLF RCNG DLNLGL R Y +CR S
Sbjct: 61 SISASDSAESPINAAGCSLICNAISHSAPSLCLFGRCNGGRLDLNLGLLQRRSYTTCR-S 120
Query: 121 FSSDSF------EKPQFGTGELNVFKPNVTSNQFWDIINIIRANQEDLESKLDSLNI 150
F S SF EKPQ GTG L+V KPN NQFWDII IIR N+EDLESKL+SLN+
Sbjct: 121 FLSSSFNQPTSTEKPQCGTGNLDVSKPNARQNQFWDIIKIIRRNEEDLESKLNSLNL 174
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG6577474.1 | 5.25e-107 | 100.00 | hypothetical protein SDJN03_25048, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG7015541.1 | 3.20e-100 | 98.67 | Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... | [more] |
| XP_022932243.1 | 3.20e-100 | 98.67 | pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Cucur... | [more] |
| XP_023007595.1 | 5.85e-98 | 96.67 | pentatricopeptide repeat-containing protein At1g09820-like [Cucurbita maxima] | [more] |
| XP_023552923.1 | 3.02e-95 | 95.33 | pentatricopeptide repeat-containing protein At1g09820-like [Cucurbita pepo subsp... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1F148 | 1.55e-100 | 98.67 | pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like OS=Cuc... | [more] |
| A0A6J1L3E8 | 2.83e-98 | 96.67 | pentatricopeptide repeat-containing protein At1g09820-like OS=Cucurbita maxima O... | [more] |
| A0A5D3D9T8 | 4.39e-58 | 70.20 | Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... | [more] |
| A0A0A0L3E7 | 4.68e-57 | 72.19 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G637180 PE=4 SV=1 | [more] |
| A0A6J1CJ38 | 5.79e-37 | 51.41 | pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like OS=Mom... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
