Csor.00g030950 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g030950
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	RNA polymerase II elongation factor
Location	Csor_Chr16: 6824599 .. 6825407 (+)
RNA-Seq Expression	Csor.00g030950
Synteny	Csor.00g030950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACCGAAACGAAAGATTCCGGTGCCGCCGCGCACGTAGTCGAAATCCCAGCAGAGAATCAGAACGTTATGATCTCTGTAATAGAACAACACCCATTGAGGCAAATCTCCGAAAGCTCTGGCCATTTATTGCTTTTAAAGCTCTGGCAACGAGAGGAGCATCTGTTCGGCCTACGAATTGGGCGGCGAGAGACCAAACTGGAGTCTCTAAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTGTTCCACGCCCTGTCTCTGACTCTCTTGTTCACTTCGTCCGATCCCAATGTGTGCCACAAATGGTGGGTTCCGGGAGTGGCAATGGGGGCGACGTCGGGCGTGTTCGTGATCGTGGTGCAGCTGAAATTGTGGCTGTATTGGAAGGCATCAGCGCAGCTGCAAAGGGAGAAGAGTGAGAACAGAGCACTTACAAGATGTGTTCAAGAGCTGAGGATGAAAGGGTCGTGTTTTAATTTGTCGAAAGAGCCTCAAATTGGGCATAGGATGAAGAGCTCTAGTGTGGAGATTAAATGGGGGCCTCTTACTTGGTTGTCCAGGAATTTCGTCACCATTTTTCTTCTGTGCTTTTCTGGCATTGTTTTTGGTGCTTCCAAGTTCATACTCTGTGGCCTTTGAAGTGCTTCCAAGTTCAACTTGCTGCAGCTGCCAGGTATAAGCTCCTAATTACCATAGTTAATTGCATTTATTAGATCAAAATTTTGATTTGTGATGAATTTTGTTGCTTAACCATGGATTTTGTGTTGCAATGATGCAGGTTGGTGAAGCAACAAGAATAG

mRNA sequence

ATGGCGACCGAAACGAAAGATTCCGGTGCCGCCGCGCACGTAGTCGAAATCCCAGCAGAGAATCAGAACGTTATGATCTCTGTAATAGAACAACACCCATTGAGGCAAATCTCCGAAAGCTCTGGCCATTTATTGCTTTTAAAGCTCTGGCAACGAGAGGAGCATCTGTTCGGCCTACGAATTGGGCGGCGAGAGACCAAACTGGAGTCTCTAAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTGTTCCACGCCCTGTCTCTGACTCTCTTGTTCACTTCGTCCGATCCCAATGTGTGCCACAAATGGTGGGTTCCGGGAGTGGCAATGGGGGCGACGTCGGGCGTGTTCGTGATCGTGGTGCAGCTGAAATTGTGGCTGTATTGGAAGGCATCAGCGCAGCTGCAAAGGGAGAAGAGTGAGAACAGAGCACTTACAAGATGTGTTCAAGAGCTGAGGATGAAAGGGTCGTGTTTTAATTTGTCGAAAGAGCCTCAAATTGGGCATAGGATGAAGAGCTCTATTCATACTCTGTGGCCTTTGAAGTGCTTCCAAGTTCAACTTGCTGCAGCTGCCAGGTTGGTGAAGCAACAAGAATAG

Coding sequence (CDS)

ATGGCGACCGAAACGAAAGATTCCGGTGCCGCCGCGCACGTAGTCGAAATCCCAGCAGAGAATCAGAACGTTATGATCTCTGTAATAGAACAACACCCATTGAGGCAAATCTCCGAAAGCTCTGGCCATTTATTGCTTTTAAAGCTCTGGCAACGAGAGGAGCATCTGTTCGGCCTACGAATTGGGCGGCGAGAGACCAAACTGGAGTCTCTAAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTGTTCCACGCCCTGTCTCTGACTCTCTTGTTCACTTCGTCCGATCCCAATGTGTGCCACAAATGGTGGGTTCCGGGAGTGGCAATGGGGGCGACGTCGGGCGTGTTCGTGATCGTGGTGCAGCTGAAATTGTGGCTGTATTGGAAGGCATCAGCGCAGCTGCAAAGGGAGAAGAGTGAGAACAGAGCACTTACAAGATGTGTTCAAGAGCTGAGGATGAAAGGGTCGTGTTTTAATTTGTCGAAAGAGCCTCAAATTGGGCATAGGATGAAGAGCTCTATTCATACTCTGTGGCCTTTGAAGTGCTTCCAAGTTCAACTTGCTGCAGCTGCCAGGTTGGTGAAGCAACAAGAATAG

Protein sequence

MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSIHTLWPLKCFQVQLAAAARLVKQQE

Homology

[Close]

BLAST of Csor.00g030950 vs. NCBI nr
Match: KAG6577505.1 (hypothetical protein SDJN03_25079, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 407 bits (1045), Expect = 3.57e-143
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60
           MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR
Sbjct: 1   MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60

Query: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120
           IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV
Sbjct: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120

Query: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSIHTL 180
           IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSIHTL
Sbjct: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSIHTL 180

Query: 181 WPLKCFQVQLAAAARLVKQQE 201
           WPLKCFQVQLAAAARLVKQQE
Sbjct: 181 WPLKCFQVQLAAAARLVKQQE 201

[Close]

BLAST of Csor.00g030950 vs. NCBI nr
Match: XP_022932317.1 (uncharacterized protein LOC111438709 [Cucurbita moschata])

HSP 1 Score: 357 bits (915), Expect = 3.87e-123
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60
           MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR
Sbjct: 1   MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60

Query: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120
           IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV
Sbjct: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120

Query: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSS 176
           IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSS
Sbjct: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSS 176

[Close]

BLAST of Csor.00g030950 vs. NCBI nr
Match: KAG7015562.1 (hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 357 bits (915), Expect = 3.87e-123
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60
           MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR
Sbjct: 1   MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60

Query: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120
           IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV
Sbjct: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120

Query: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSS 176
           IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSS
Sbjct: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSS 176

[Close]

BLAST of Csor.00g030950 vs. NCBI nr
Match: XP_022965180.1 (uncharacterized protein LOC111465114 [Cucurbita maxima])

HSP 1 Score: 350 bits (899), Expect = 1.06e-120
Identity = 172/176 (97.73%), Postives = 174/176 (98.86%), Query Frame = 0


Query: 1   MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60
           MATETKDSGAA H+VEIPAENQN+MISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR
Sbjct: 1   MATETKDSGAATHIVEIPAENQNIMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60

Query: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120
           IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV
Sbjct: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120

Query: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSS 176
           IVVQLKLWLYWKASAQLQREKSENRALTR VQELRMKGSCFNLSKEPQIGHRMKSS
Sbjct: 121 IVVQLKLWLYWKASAQLQREKSENRALTRIVQELRMKGSCFNLSKEPQIGHRMKSS 176

[Close]

BLAST of Csor.00g030950 vs. NCBI nr
Match: XP_023553388.1 (uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 348 bits (893), Expect = 8.40e-120
Identity = 172/176 (97.73%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 1   MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60
           MATET+DSGAA HVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR
Sbjct: 1   MATETRDSGAA-HVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60

Query: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120
           +GRRETK+ESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV
Sbjct: 61  VGRRETKMESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120

Query: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSS 176
           IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSS
Sbjct: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSS 175

[Close]

BLAST of Csor.00g030950 vs. ExPASy TrEMBL
Match: A0A6J1EWB5 (uncharacterized protein LOC111438709 OS=Cucurbita moschata OX=3662 GN=LOC111438709 PE=4 SV=1)

HSP 1 Score: 357 bits (915), Expect = 1.87e-123
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60
           MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR
Sbjct: 1   MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60

Query: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120
           IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV
Sbjct: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120

Query: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSS 176
           IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSS
Sbjct: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSS 176

[Close]

BLAST of Csor.00g030950 vs. ExPASy TrEMBL
Match: A0A6J1HN07 (uncharacterized protein LOC111465114 OS=Cucurbita maxima OX=3661 GN=LOC111465114 PE=4 SV=1)

HSP 1 Score: 350 bits (899), Expect = 5.13e-121
Identity = 172/176 (97.73%), Postives = 174/176 (98.86%), Query Frame = 0


Query: 1   MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60
           MATETKDSGAA H+VEIPAENQN+MISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR
Sbjct: 1   MATETKDSGAATHIVEIPAENQNIMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60

Query: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120
           IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV
Sbjct: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120

Query: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSS 176
           IVVQLKLWLYWKASAQLQREKSENRALTR VQELRMKGSCFNLSKEPQIGHRMKSS
Sbjct: 121 IVVQLKLWLYWKASAQLQREKSENRALTRIVQELRMKGSCFNLSKEPQIGHRMKSS 176

[Close]

BLAST of Csor.00g030950 vs. ExPASy TrEMBL
Match: A0A1S3BL81 (uncharacterized protein LOC103491049 OS=Cucumis melo OX=3656 GN=LOC103491049 PE=4 SV=1)

HSP 1 Score: 303 bits (776), Expect = 2.99e-102
Identity = 156/199 (78.39%), Postives = 169/199 (84.92%), Query Frame = 0


Query: 4   ETKDSGAAAHVVEIPAEN----QNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGL 63
           +TKDS  AAH+VEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGL
Sbjct: 3   QTKDS-TAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGL 62

Query: 64  RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVF 123
           RIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP VC KWWVP V +GATSGVF
Sbjct: 63  RIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGVF 122

Query: 124 VIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSS-IH 183
           VIVVQLKLW+YWKA  QLQREKSENRALTRC QELRMKGSCFNLSKEPQIG+RMKSS + 
Sbjct: 123 VIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVE 182

Query: 184 TLW-PLKCFQVQLAAAARL 196
             W PL  F     A + L
Sbjct: 183 IKWGPLTWFSRNFIAISLL 200

[Close]

BLAST of Csor.00g030950 vs. ExPASy TrEMBL
Match: A0A0A0L2U7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061020 PE=4 SV=1)

HSP 1 Score: 303 bits (775), Expect = 4.24e-102
Identity = 154/189 (81.48%), Postives = 167/189 (88.36%), Query Frame = 0


Query: 4   ETKDSGAAAHVVEIPAEN----QNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGL 63
           ETKDS  AAH+VEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGL
Sbjct: 3   ETKDS-TAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGL 62

Query: 64  RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVF 123
           RIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP VC KWWVP V +GATSGVF
Sbjct: 63  RIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGVF 122

Query: 124 VIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSS-IH 183
           VIVVQLKLW+YWKA  QLQ+EK+ENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSS + 
Sbjct: 123 VIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVE 182

Query: 184 TLW-PLKCF 186
             W PL  F
Sbjct: 183 IKWGPLTWF 190

[Close]

BLAST of Csor.00g030950 vs. ExPASy TrEMBL
Match: A0A2P6QLA8 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0074881 PE=4 SV=1)

HSP 1 Score: 213 bits (542), Expect = 1.39e-66
Identity = 103/175 (58.86%), Postives = 131/175 (74.86%), Query Frame = 0


Query: 13  HVVEIPAENQN--------VMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRR 72
           HVVEIP + ++         +IS I+ HPL +ISES GHLLLLKLW+REE LFG RI RR
Sbjct: 10  HVVEIPVDEEHQQKLSSSMTIISAIQHHPLMEISESPGHLLLLKLWRREEDLFGRRIARR 69

Query: 73  ETKLESLKQQIFQLCCYFFLFHALSLTLLFTSS---DPNVCHKWWVPGVAMGATSGVFVI 132
           ET+++ ++++IFQLCC+F +FHA  LT+LFTSS   +   C KWW+P +   +TS VFV+
Sbjct: 70  ETRMDLIRREIFQLCCFFLIFHAFFLTILFTSSVNSEKGSCQKWWIPSILSVSTSVVFVV 129

Query: 133 VVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSS 176
           +VQ+ LW YWK   QLQREK ENRAL RC+QELRMKG+ F+LSKEPQ G R+KSS
Sbjct: 130 LVQVNLWRYWKVWGQLQREKIENRALVRCIQELRMKGASFDLSKEPQSGKRLKSS 184

[Close]

BLAST of Csor.00g030950 vs. TAIR 10
Match: AT5G56120.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12870.1); Has 77 Blast hits to 75 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 183.0 bits (463), Expect = 2.4e-46
Identity = 99/198 (50.00%), Postives = 129/198 (65.15%), Query Frame = 0


Query: 5   TKDSGAAAHVVEIPAENQNV-----------------MISVIEQHPLRQISESSGHLLLL 64
           TKDS    HVVEIP + ++                  ++ VI+QHPL +ISES GHLLLL
Sbjct: 4   TKDS----HVVEIPVDEEHKERQQQQQLVAVSNPGMGILKVIQQHPLSEISESPGHLLLL 63

Query: 65  KLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN------- 124
           KLWQREE LF  R+  +E++LES+K++IFQLCC+F +FH    TL+++SS  +       
Sbjct: 64  KLWQREEDLFCRRVLLKESRLESIKREIFQLCCFFLVFHGFFFTLVYSSSCSDDADVVKS 123

Query: 125 --VCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKG 177
             VC KWW+P     ATS V V +VQ KL+++WK    + RE+++NR LTRCV ELRMKG
Sbjct: 124 NAVCKKWWIPSAVSLATSLVLVFLVQAKLFVFWKVYRGVNRERNDNRTLTRCVLELRMKG 183

[Close]

BLAST of Csor.00g030950 vs. TAIR 10
Match: AT3G12870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56120.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 99.8 bits (247), Expect = 2.7e-21
Identity = 55/152 (36.18%), Postives = 90/152 (59.21%), Query Frame = 0


Query: 31  QHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSL 90
           +HPL QI+++  H LLLK W +EE L   R+  +E++++S++++I QL  +FFLFH++SL
Sbjct: 17  RHPLHQIADTPTHKLLLKQWLKEEELILSRVSHKESQIDSVRREITQLYIFFFLFHSISL 76

Query: 91  TLLF-------TSSDPNVCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSE 150
            LLF       +S+  + C + W+P +    +S   +  V+ K  +       L+REK +
Sbjct: 77  LLLFHASSSSSSSASSSACKRSWIPSLCALLSSLGIIWAVRYKSEVESHLEKLLEREKED 136

Query: 151 NRALTRCVQELRMKGSCFNLSKEPQIGHRMKS 176
            + L +CV+EL+ KG  F+L KE     R KS
Sbjct: 137 AKLLRKCVEELKKKGIEFDLLKEVDALRRAKS 168

The following BLAST results are available for this feature:

BLAST of Csor.00g030950 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g030950 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577505.1	3.57e-143	100.00	hypothetical protein SDJN03_25079, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022932317.1	3.87e-123	100.00	uncharacterized protein LOC111438709 [Cucurbita moschata]	[more]
KAG7015562.1	3.87e-123	100.00	hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022965180.1	1.06e-120	97.73	uncharacterized protein LOC111465114 [Cucurbita maxima]	[more]
XP_023553388.1	8.40e-120	97.73	uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g030950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EWB5	1.87e-123	100.00	uncharacterized protein LOC111438709 OS=Cucurbita moschata OX=3662 GN=LOC1114387...	[more]
A0A6J1HN07	5.13e-121	97.73	uncharacterized protein LOC111465114 OS=Cucurbita maxima OX=3661 GN=LOC111465114...	[more]
A0A1S3BL81	2.99e-102	78.39	uncharacterized protein LOC103491049 OS=Cucumis melo OX=3656 GN=LOC103491049 PE=...	[more]
A0A0A0L2U7	4.24e-102	81.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061020 PE=4 SV=1	[more]
A0A2P6QLA8	1.39e-66	58.86	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0074881 PE=4...	[more]

BLAST of Csor.00g030950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56120.1	2.4e-46	50.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G12870.1	2.7e-21	36.18	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 137..157
None	No IPR available	PANTHER	PTHR33287:SF3	OS03G0453550 PROTEIN	coord: 1..176
None	No IPR available	PANTHER	PTHR33287	OS03G0453550 PROTEIN	coord: 1..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g030950.m01	Csor.00g030950.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane