Csor.00g030740 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g030740
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr16: 7008140 .. 7008406 (+)
RNA-Seq Expression	Csor.00g030740
Synteny	Csor.00g030740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATTCCCAGGAAAGTAGCGAAGTTCAGATTCCACATTGTAGCAGCCCTAATCCTATCCCTAATTCTCTTCTCCCTCCTCCTCCTCGCCCCCAAATTCCTCTCCCTCCTCGCCTTCTTCTGGCCTCTCCTCCTCTCCACCGCCCTCTTCCTTCTCGCCGTCCTCCTCTTCACCAACACCTCCCTTCCTCTGCCCGATAAAGCCGCCGAAGGCCTCCTCAACTATGTCGCCGGCCACCCCGACCACCACCTCGACGCCGATTAA

mRNA sequence

ATGGAGATTCCCAGGAAAGTAGCGAAGTTCAGATTCCACATTGTAGCAGCCCTAATCCTATCCCTAATTCTCTTCTCCCTCCTCCTCCTCGCCCCCAAATTCCTCTCCCTCCTCGCCTTCTTCTGGCCTCTCCTCCTCTCCACCGCCCTCTTCCTTCTCGCCGTCCTCCTCTTCACCAACACCTCCCTTCCTCTGCCCGATAAAGCCGCCGAAGGCCTCCTCAACTATGTCGCCGGCCACCCCGACCACCACCTCGACGCCGATTAA

Coding sequence (CDS)

ATGGAGATTCCCAGGAAAGTAGCGAAGTTCAGATTCCACATTGTAGCAGCCCTAATCCTATCCCTAATTCTCTTCTCCCTCCTCCTCCTCGCCCCCAAATTCCTCTCCCTCCTCGCCTTCTTCTGGCCTCTCCTCCTCTCCACCGCCCTCTTCCTTCTCGCCGTCCTCCTCTTCACCAACACCTCCCTTCCTCTGCCCGATAAAGCCGCCGAAGGCCTCCTCAACTATGTCGCCGGCCACCCCGACCACCACCTCGACGCCGATTAA

Protein sequence

MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTNTSLPLPDKAAEGLLNYVAGHPDHHLDAD

Homology

[Close]

BLAST of Csor.00g030740 vs. NCBI nr
Match: KAG6577526.1 (hypothetical protein SDJN03_25100, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015588.1 hypothetical protein SDJN02_23224, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160 bits (406), Expect = 2.21e-49
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60
          MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN
Sbjct: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60

Query: 61 TSLPLPDKAAEGLLNYVAGHPDHHLDAD 88
          TSLPLPDKAAEGLLNYVAGHPDHHLDAD
Sbjct: 61 TSLPLPDKAAEGLLNYVAGHPDHHLDAD 88

[Close]

BLAST of Csor.00g030740 vs. NCBI nr
Match: KGN56016.1 (hypothetical protein Csa_010324 [Cucumis sativus])

HSP 1 Score: 121 bits (303), Expect = 1.23e-33
Identity = 70/87 (80.46%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60
          MEIP KV KFRFHI+  LILSL LFSL LLAP FLSLLA+FWPL LSTALFLLAVLLF N
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 TSLPLPDKAAEGLLNYVAGHPDHHLDA 87
          TSLP PDKAAEGLL+YVAGH  H LD+
Sbjct: 61 TSLPSPDKAAEGLLSYVAGH--HDLDS 85

[Close]

BLAST of Csor.00g030740 vs. NCBI nr
Match: KAG7028299.1 (hypothetical protein SDJN02_09480, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113 bits (283), Expect = 1.34e-30
Identity = 67/87 (77.01%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60
          MEIP KV KFRFH +AAL L L LFSL+LLAP+ LSL+A+FWPLLLSTALFLLAVLLF N
Sbjct: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60

Query: 61 TSLPLPDKAAEGLLNYVAGHPDHHLDA 87
           SLP PDK  EGLLNYVAGH D  LDA
Sbjct: 61 ASLPPPDKTGEGLLNYVAGHLD--LDA 85

[Close]

BLAST of Csor.00g030740 vs. NCBI nr
Match: KAG6596766.1 (hypothetical protein SDJN03_09946, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112 bits (280), Expect = 3.83e-30
Identity = 66/87 (75.86%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60
          MEIP KV +FRFH +AAL L L LFSL+LLAP+ LSL+A+FWPLLLSTALFLLAVLLF N
Sbjct: 1  MEIPSKVWRFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60

Query: 61 TSLPLPDKAAEGLLNYVAGHPDHHLDA 87
           SLP PDK  EGLLNYVAGH D  LDA
Sbjct: 61 ASLPPPDKTGEGLLNYVAGHLD--LDA 85

[Close]

BLAST of Csor.00g030740 vs. NCBI nr
Match: XP_011459287.1 (PREDICTED: uncharacterized protein LOC101294242 [Fragaria vesca subsp. vesca])

HSP 1 Score: 97.1 bits (240), Expect = 5.60e-24
Identity = 54/91 (59.34%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60
          MEIP K+ KF++H ++ALI  L L+SL L AP+FL++LA+FWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKYHFLSALIFCLTLYSLTLFAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 TSLP----LPDKAAEGLLNYVAGHPDHHLDA 87
          TSLP      DKA EGLL+YVAG PDH +++
Sbjct: 61 TSLPGSDSHADKAGEGLLDYVAGQPDHAVES 91

[Close]

BLAST of Csor.00g030740 vs. ExPASy TrEMBL
Match: A0A0A0L7E9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047770 PE=4 SV=1)

HSP 1 Score: 121 bits (303), Expect = 5.97e-34
Identity = 70/87 (80.46%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60
          MEIP KV KFRFHI+  LILSL LFSL LLAP FLSLLA+FWPL LSTALFLLAVLLF N
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 TSLPLPDKAAEGLLNYVAGHPDHHLDA 87
          TSLP PDKAAEGLL+YVAGH  H LD+
Sbjct: 61 TSLPSPDKAAEGLLSYVAGH--HDLDS 85

[Close]

BLAST of Csor.00g030740 vs. ExPASy TrEMBL
Match: M5WI68 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G242100 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.85e-24
Identity = 49/87 (56.32%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60
          MEIP K+ KF+FH + ALIL L L+++ L+AP+FL++LA+FWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 TSLPLPDKAAEGLLNYVAGHPDHHLDA 87
          T+LP+ + + EGLL+YVAG P+H +++
Sbjct: 61 TTLPVTEASGEGLLDYVAGQPEHVVES 87

[Close]

BLAST of Csor.00g030740 vs. ExPASy TrEMBL
Match: A0A314XNV4 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_25186 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.85e-24
Identity = 49/87 (56.32%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60
          MEIP K+ KF+FH + ALIL L L+++ L+AP+FL++LA+FWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 TSLPLPDKAAEGLLNYVAGHPDHHLDA 87
          T+LP+ + + EGLL+YVAG P+H +++
Sbjct: 61 TTLPVTEPSGEGLLDYVAGQPEHVVES 87

[Close]

BLAST of Csor.00g030740 vs. ExPASy TrEMBL
Match: A0A5E4FSR9 (PREDICTED: transmembrane OS=Prunus dulcis OX=3755 GN=ALMOND_2B021217 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.85e-24
Identity = 49/87 (56.32%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60
          MEIP K+ KF+FH + ALIL L L+++ L+AP+FL++LA+FWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 TSLPLPDKAAEGLLNYVAGHPDHHLDA 87
          T+LP+ + + EGLL+YVAG P+H +++
Sbjct: 61 TTLPVTEASGEGLLDYVAGQPEHVVES 87

[Close]

BLAST of Csor.00g030740 vs. ExPASy TrEMBL
Match: A0A6P5SWK3 (uncharacterized protein LOC110760142 OS=Prunus avium OX=42229 GN=LOC110760142 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.85e-24
Identity = 49/87 (56.32%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60
          MEIP K+ KF+FH + ALIL L L+++ L+AP+FL++LA+FWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 TSLPLPDKAAEGLLNYVAGHPDHHLDA 87
          T+LP+ + + EGLL+YVAG P+H +++
Sbjct: 61 TTLPVTEASGEGLLDYVAGQPEHVVES 87

[Close]

BLAST of Csor.00g030740 vs. TAIR 10
Match: AT3G13175.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16400.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 6.1e-10
Identity = 45/101 (44.55%), Postives = 60/101 (59.41%), Query Frame = 0


Query: 1   MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60
           ME   K+ KF+  IV A +LSL+  +L+  +P FL++L++FWPL LSTALFL AV  F  
Sbjct: 1   MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60

Query: 61  TS-LPLPDK-----------AAEGLLNYVAG--HPDHHLDA 88
           TS LP+              AAEG+L+YV G  H D   D+
Sbjct: 61  TSDLPVSSTIIPGEGAGLKVAAEGILDYVVGGQHEDILFDS 101

[Close]

BLAST of Csor.00g030740 vs. TAIR 10
Match: AT4G16400.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-09
Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 1   MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60
           MEI  K+ ++RFH +  +++S+I+ SL+  AP+ L++LA+FWPL  STA FL   + F  
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGG 181

Query: 61  TSLPLPDKAAEGLLNYVAGHPD 83
                 +   E L++YVAG P+
Sbjct: 182 FQQLSEEATGERLMDYVAGRPE 203

The following BLAST results are available for this feature:

BLAST of Csor.00g030740 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g030740 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577526.1	2.21e-49	100.00	hypothetical protein SDJN03_25100, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN56016.1	1.23e-33	80.46	hypothetical protein Csa_010324 [Cucumis sativus]	[more]
KAG7028299.1	1.34e-30	77.01	hypothetical protein SDJN02_09480, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6596766.1	3.83e-30	75.86	hypothetical protein SDJN03_09946, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_011459287.1	5.60e-24	59.34	PREDICTED: uncharacterized protein LOC101294242 [Fragaria vesca subsp. vesca]	[more]

BLAST of Csor.00g030740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7E9	5.97e-34	80.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047770 PE=4 SV=1	[more]
M5WI68	3.85e-24	56.32	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G242100 PE=4 SV=1	[more]
A0A314XNV4	3.85e-24	56.32	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_251...	[more]
A0A5E4FSR9	3.85e-24	56.32	PREDICTED: transmembrane OS=Prunus dulcis OX=3755 GN=ALMOND_2B021217 PE=4 SV=1	[more]
A0A6P5SWK3	3.85e-24	56.32	uncharacterized protein LOC110760142 OS=Prunus avium OX=42229 GN=LOC110760142 PE...	[more]

BLAST of Csor.00g030740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13175.1	6.1e-10	44.55	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G16400.1	4.0e-09	40.24	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125	OS01G0762900 PROTEIN	coord: 1..87
None	No IPR available	PANTHER	PTHR34125:SF4	PROTEIN, PUTATIVE-RELATED	coord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g030740.m01	Csor.00g030740.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane