Csor.00g030530 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g030530
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr16: 7228313 .. 7230918 (+)
RNA-Seq ExpressionCsor.00g030530
SyntenyCsor.00g030530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACGATGTCGTTTTGTGTGGGTCTTATCATCCCAACTCCAAGGTTATGGGCTTACCCTTCCCATCTCATCGCCACGCTACAAAACATCATAATATTTATGTTTTTTTTTTATTTATTTATTTCTTCGAGAAAAAAAAATAATAAATAAAAACCAAATTATTGTTTTTGGTTTGGTTTTCCGTTCGTATCTTTTGGCTATAAGAACGTTTCTTCATCTCTCTGCTCGTCTCTCTCTCTCTCTCTGGATTTGTCACCTTCGCTCTAAATCGTCGACAGCCACCGCATCACCTCACCGGAACAACCTCGCTTCCATCGTCGTCCCCTCTCCTTATACGGTATACTACGGTTGATTTTAATTTCTTTGTTTTTATGCATAAATTTGCAACACAATATGATTACTGGATTTTGTTGCTGTGTGGAAGCTTCACCAGTTTCAATTGAATTGCGTTTTATCTTCACCAGATCGTTTCCGGATTTTATGTTTGTGTAATCGAATGTTTGGAATGTGAAATCTGTTGTTTGGTGGGACCTATAACGATTAATTGCGCGACTGGATCTGTTTCCGATTTAGAGATCTGTGGTTGGGAGGGATTTTGTGATGGCTGTTGTGCCTCTTTTTCTTTAGGAAGTTGTTATGGTAATTTTCTATGGGTTCTATCCCATTGGTTGGAAATTTCGGTGGCTATTTTTCTTTTGTTATATTCGAATTCAGCTCTCTAATTGGTCGTGGCAATGCTTGTGGAGATTAGAGTGCCTTTGGAAGGTTTTCCGCGTTCCCAAAAAACTTGGATGTGTGAAAGTAGAGTTGGTATCACTCTTTTTCTTTGATATGTTCTTCAGAGAATGTTCTGATCTGGAAACAACGTTTTTTATTTTTTAATGCTTATGTGGTAGAAAGATTGTGCAAGAAATGCATCACCATAATTCTGTAACTCCCATCATCATTGTCTAATGACTATAGTCTAGTTCTGGTCTTGATGTAGCAAATAGATTTTTTGCTTATATTGGATTTGTTCAGGAGATTAGACATAGTTTAACTATGGTATTTTCGCATTTCATTGAAGATTATAAATTGGTTTCTCATCAGTTTACCTAAAAACACAACGGATCTCCTTTTCGGGATTCTAGGACAGGGACAGTTATGTGTATTATACATGTATGTTTATAGCATGTTGTGAATATTTTCTTTGCCAGTTGAATGCTTGGAAGCTCTTTTTGGAATATGCAGCTTGCTTCCCCGATTATAAGTGTTGCATCTTTACAGAATTCTTATGTAGCTAAACACCAATCGAATTTGCGCATTATGTATTATTTCTTCCTTTTTCTCTCCCTTTTTTCTCCAAATACTCTCTTGCAGTTTGTTCTTTTATGACTATTTCAGTTTTATCTTATCCACGGGGAAATTTGAACTTACGATCTCCCTTTATTTCTCCATTTAGATTTCTTTTTTAAAACTAATTTTATATAAGGACTAACAGGTATCTTACTAACTATTTACTGAGTTTTGTTTAGTTCTTAAAGCTTACTTGTTGTGCCTATTTAAACTGGTTGATTAGCCTATTTGTTTAGCTACATTTCAAGCTGTATGGAGCATGTATACGTTAGTTTGGGTACTGTCCTCATGTTTGATATGTACTGAAACTATTGATACTTGTACTTGTTAAGCACAATAGACATTTGTCAAATACTCGAATATGGATGTGTTAGATGACTGTTGGTTGACACTCGACAGTGAATGGCAGATAATTTCTGAACACTTGAACTGAAGTGTTAATCTAGAAAATAGAAATAATATTAAGGGACATAAAAAGTAAGAGAAATTATAAAAGCATATAAGTGCATAAGCATTATTGACATAATTTTTTTTATAAGCTGTGAAAAGTTTTTTAATATTGTCTGGCATATTCTAAAAGATATTGTTGTAAATGTGTCATGGCTGTTTCCATGTCCTAGTTCATTAGACAATGACGTCATTGTGATTGTGCCTTGTTTGTGTCCCATGCCATGTCTATGCTTCTCTGTTACTGGCTAATACTTGATACAATTTGGAAATGGAGAATTTATAATTACTTTTGTATTAAATAATATGAAACTCATGAAGCGCCTAGACATGATCATCTTACTTGATAGAGCCACCTTGAAAAGCACCAGCTTGATGCATCCACCTCGAAAACGCCTTTTGGATGCAAGGATTTTTTTTTTTGGATAAGAAACAATTTCATTGATTAAATGAAATGATTCAAAAGGGAGTAAACCCATCTTAAGAGATTACAAAAAACTTCTCCAATAAGTTTATGCAAGGATAATCAAATTATTGTGACATTAAAATAAAAGAAAAAAGAAGATGTTAATGCAGGGATAGTCAAGGAGGAAGTTTGGGTTGGGAAGTCGTTAAGCATCCAGTTGATGCTAGTTTTTATTTTGTTAGTTATTGACTTATTATTATCTGTTCTTGCTGTTATGTAACATTGAAAAGCTCCTTGAGCCGTCTATTCCTTCTCCAGAAAATATTTTTGTACTTCACTTGTTACCGTTTGTTCTATTAATTCCTAATGTACTCAAAATATTCTTAACCAGAATAGGTTTCCTGTTGTTATGTGA

mRNA sequence

ATGAAAACGATGTCGTTTTGTGTGGGTCTTATCATCCCAACTCCAAGAACGTTTCTTCATCTCTCTGCTCGTCTCTCTCTCTCTCTCTGGATTTGTCACCTTCGCTCTAAATCGTCGACAGCCACCGCATCACCTCACCGGAACAACCTCGCTTCCATCGTCGTCCCCTCTCCTTATACGAATAGGTTTCCTGTTGTTATGTGA

Coding sequence (CDS)

ATGAAAACGATGTCGTTTTGTGTGGGTCTTATCATCCCAACTCCAAGAACGTTTCTTCATCTCTCTGCTCGTCTCTCTCTCTCTCTCTGGATTTGTCACCTTCGCTCTAAATCGTCGACAGCCACCGCATCACCTCACCGGAACAACCTCGCTTCCATCGTCGTCCCCTCTCCTTATACGAATAGGTTTCCTGTTGTTATGTGA

Protein sequence

MKTMSFCVGLIIPTPRTFLHLSARLSLSLWICHLRSKSSTATASPHRNNLASIVVPSPYTNRFPVVM
Homology
[Close]
BLAST of Csor.00g030530 vs. NCBI nr
Match: KAG6577546.1 (hypothetical protein SDJN03_25120, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136 bits (342), Expect = 2.92e-40
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MKTMSFCVGLIIPTPRTFLHLSARLSLSLWICHLRSKSSTATASPHRNNLASIVVPSPYT 60
          MKTMSFCVGLIIPTPRTFLHLSARLSLSLWICHLRSKSSTATASPHRNNLASIVVPSPYT
Sbjct: 1  MKTMSFCVGLIIPTPRTFLHLSARLSLSLWICHLRSKSSTATASPHRNNLASIVVPSPYT 60

Query: 61 NRFPVVM 67
          NRFPVVM
Sbjct: 61 NRFPVVM 67

The following BLAST results are available for this feature:
BLAST of Csor.00g030530 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g030530 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6577546.12.92e-40100.00hypothetical protein SDJN03_25120, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g030530 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g030530 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g030530.m01Csor.00g030530.m01mRNA