Csor.00g030450 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g030450
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionzinc finger protein ZAT3-like
LocationCsor_Chr16: 7294674 .. 7295168 (+)
RNA-Seq ExpressionCsor.00g030450
SyntenyCsor.00g030450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCAAGATAGTCAAAACCTAAGATTTGAAGGTGGCCCTGCTTCTTCAAATGGTGATGAAGATGCATCGTCTTCTTCATCTTCGTCATCTCCATGTTCGAGGTCGAACGAACAAGCTTTTAGCCATAGCTGCAATATTAGAAGAGAAGGGTTTAAGTCTGAAAACTCACAAACTACCAACAGCAATATAGCATGCTATAGCTCCATTACTAGAAGTGCAGCTGATAGCTTGGAGAAGCCCAAATGTGGACGGTGCAATGAGGTTTTTTCATCCATGAAGGCATTGTATGTGCATATGAGGTTTCATTTGGAGGCCCCATGGAAGGCTTGTATCTCCTCTTTGAATGATGCTTGTTGGAGCTGGTCTGTCACTGGTCGGAGAGGGCGAATAAGGACGAGAGTGGAAAAATTCGAGGTTAACCTCATGAATTTTGCTCAAACGGGAAACTCGACTACGAGTTCTGTTACCACCGTAAAGAAAAAGGATAATTAA

mRNA sequence

ATGCATCAAGATAGTCAAAACCTAAGATTTGAAGGTGGCCCTGCTTCTTCAAATGGTGATGAAGATGCATCGTCTTCTTCATCTTCGTCATCTCCATGTTCGAGGTCGAACGAACAAGCTTTTAGCCATAGCTGCAATATTAGAAGAGAAGGGTTTAAGTCTGAAAACTCACAAACTACCAACAGCAATATAGCATGCTATAGCTCCATTACTAGAAGTGCAGCTGATAGCTTGGAGAAGCCCAAATGTGGACGGTGCAATGAGGTTTTTTCATCCATGAAGGCATTGTATGTGCATATGAGGTTTCATTTGGAGGCCCCATGGAAGGCTTGTATCTCCTCTTTGAATGATGCTTGTTGGAGCTGGTCTGTCACTGGTCGGAGAGGGCGAATAAGGACGAGAGTGGAAAAATTCGAGGTTAACCTCATGAATTTTGCTCAAACGGGAAACTCGACTACGAGTTCTGTTACCACCGTAAAGAAAAAGGATAATTAA

Coding sequence (CDS)

ATGCATCAAGATAGTCAAAACCTAAGATTTGAAGGTGGCCCTGCTTCTTCAAATGGTGATGAAGATGCATCGTCTTCTTCATCTTCGTCATCTCCATGTTCGAGGTCGAACGAACAAGCTTTTAGCCATAGCTGCAATATTAGAAGAGAAGGGTTTAAGTCTGAAAACTCACAAACTACCAACAGCAATATAGCATGCTATAGCTCCATTACTAGAAGTGCAGCTGATAGCTTGGAGAAGCCCAAATGTGGACGGTGCAATGAGGTTTTTTCATCCATGAAGGCATTGTATGTGCATATGAGGTTTCATTTGGAGGCCCCATGGAAGGCTTGTATCTCCTCTTTGAATGATGCTTGTTGGAGCTGGTCTGTCACTGGTCGGAGAGGGCGAATAAGGACGAGAGTGGAAAAATTCGAGGTTAACCTCATGAATTTTGCTCAAACGGGAAACTCGACTACGAGTTCTGTTACCACCGTAAAGAAAAAGGATAATTAA

Protein sequence

MHQDSQNLRFEGGPASSNGDEDASSSSSSSSPCSRSNEQAFSHSCNIRREGFKSENSQTTNSNIACYSSITRSAADSLEKPKCGRCNEVFSSMKALYVHMRFHLEAPWKACISSLNDACWSWSVTGRRGRIRTRVEKFEVNLMNFAQTGNSTTSSVTTVKKKDN
Homology
[Close]
BLAST of Csor.00g030450 vs. NCBI nr
Match: KAG6577553.1 (hypothetical protein SDJN03_25127, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 321 bits (823), Expect = 1.52e-110
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0 

Query: 1   MHQDSQNLRFEGGPASSNGDEDASSSSSSSSPCSRSNEQAFSHSCNIRREGFKSENSQTT 60
           MHQDSQNLRFEGGPASSNGDEDASSSSSSSSPCSRSNEQAFSHSCNIRREGFKSENSQTT
Sbjct: 1   MHQDSQNLRFEGGPASSNGDEDASSSSSSSSPCSRSNEQAFSHSCNIRREGFKSENSQTT 60

Query: 61  NSNIACYSSITRSAADSLEKPKCGRCNEVFSSMKALYVHMRFHLEAPWKACISSLNDACW 120
           NSNIACYSSITRSAADSLEKPKCGRCNEVFSSMKALYVHMRFHLEAPWKACISSLNDACW
Sbjct: 61  NSNIACYSSITRSAADSLEKPKCGRCNEVFSSMKALYVHMRFHLEAPWKACISSLNDACW 120

Query: 121 SWSVTGRRGRIRTRVEKFEVNLMNFAQTGNSTTSSVTTVKKKDN 164
           SWSVTGRRGRIRTRVEKFEVNLMNFAQTGNSTTSSVTTVKKKDN
Sbjct: 121 SWSVTGRRGRIRTRVEKFEVNLMNFAQTGNSTTSSVTTVKKKDN 164

[Close]
BLAST of Csor.00g030450 vs. NCBI nr
Match: XP_022143488.1 (zinc finger protein ZAT3-like [Momordica charantia])

HSP 1 Score: 55.5 bits (132), Expect = 4.43e-06
Identity = 31/66 (46.97%), Postives = 38/66 (57.58%), Query Frame = 0 

Query: 77  SLEKPKCGRCNEVFSSMKALYVHMRFHLEAPWKAC----ISSLNDACWS-----WSVTGR 133
           S+   KCG C ++F +MKALY HMR H +  W+       SS + A  S     WSVTGR
Sbjct: 16  SINSSKCGLCGKLFRTMKALYGHMRSHPDRTWRGMHPTPSSSSSSAAASTPLPTWSVTGR 75

[Close]
BLAST of Csor.00g030450 vs. ExPASy TrEMBL
Match: A0A6J1CQU4 (zinc finger protein ZAT3-like OS=Momordica charantia OX=3673 GN=LOC111013364 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.15e-06
Identity = 31/66 (46.97%), Postives = 38/66 (57.58%), Query Frame = 0 

Query: 77  SLEKPKCGRCNEVFSSMKALYVHMRFHLEAPWKAC----ISSLNDACWS-----WSVTGR 133
           S+   KCG C ++F +MKALY HMR H +  W+       SS + A  S     WSVTGR
Sbjct: 16  SINSSKCGLCGKLFRTMKALYGHMRSHPDRTWRGMHPTPSSSSSSAAASTPLPTWSVTGR 75

The following BLAST results are available for this feature:
BLAST of Csor.00g030450 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g030450 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6577553.11.52e-110100.00hypothetical protein SDJN03_25127, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022143488.14.43e-0646.97zinc finger protein ZAT3-like [Momordica charantia][more]
BLAST of Csor.00g030450 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CQU42.15e-0646.97zinc finger protein ZAT3-like OS=Momordica charantia OX=3673 GN=LOC111013364 PE=... [more]
BLAST of Csor.00g030450 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 83..103
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 81..103
score: 9.05759
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 82..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g030450.m01Csor.00g030450.m01mRNA