Csor.00g030240 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g030240
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr16: 7482551 .. 7483135 (-)
RNA-Seq Expression	Csor.00g030240
Synteny	Csor.00g030240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAAAACCTAACTCTTCCTCACCTTCCCTCCTATTCCTCATTCCTCAGCCGCCTGAGAGGCGTTTTCCGACATCTCCACCTACCGGCGGCGGACTCCGACCAGAGAACATTGAGAAGGCGGCGAGTCACTGTCGATCTTCGCTGTAGCTTCACCGATTGGCGCTCAGCGGCTCGCGAATTGCAACGCACACTCGCGCAGACCACGAACGGCTCCTTGCTTGTTCAGACGGCGAAGCACAACGACGGGGTGCCGCTACTCGAATCTGATCTTTGACTGACTCGTTCCGGCGGTTCCAGCAGCGTGTTCCGACGTCTTCGCAGCCCGCGAGCGGCGGTCCCCTTCGGCAGCCACCGAATAGACCGTCGGCGCGCGTTTGGATGCTGGATGAAAGTATGATTTAACCTTAAATCTTAAGCTTATATTTTCTGTATGGTTAGGTTAATAGAACAGTTTCCTCGTTGATTCTCACTAAAAATTGTGTTACTTAGAGTGGGCCTCAGCCTGGATTACTGCAAATTCATTCTCTGACGAATCAATCTAACGATGAAGCAACTATGGAAGTTCTCTGTTCGTCATAG

mRNA sequence

ATGGGAAGAAAACCTAACTCTTCCTCACCTTCCCTCCTATTCCTCATTCCTCAGCCGCCTGAGAGGCGTTTTCCGACATCTCCACCTACCGGCGGCGGACTCCGACCAGAGAACATTGAGAAGGCGGCGAGTCACTGTCGATCTTCGCTCAGCGTGTTCCGACGTCTTCGCAGCCCGCGAGCGGCGGTCCCCTTCGGCAGCCACCGAATAGACCGTCGGCGCGCGTTTGGATGCTGGATGAAAAGTGGGCCTCAGCCTGGATTACTGCAAATTCATTCTCTGACGAATCAATCTAACGATGAAGCAACTATGGAAGTTCTCTGTTCGTCATAG

Coding sequence (CDS)

ATGGGAAGAAAACCTAACTCTTCCTCACCTTCCCTCCTATTCCTCATTCCTCAGCCGCCTGAGAGGCGTTTTCCGACATCTCCACCTACCGGCGGCGGACTCCGACCAGAGAACATTGAGAAGGCGGCGAGTCACTGTCGATCTTCGCTCAGCGTGTTCCGACGTCTTCGCAGCCCGCGAGCGGCGGTCCCCTTCGGCAGCCACCGAATAGACCGTCGGCGCGCGTTTGGATGCTGGATGAAAAGTGGGCCTCAGCCTGGATTACTGCAAATTCATTCTCTGACGAATCAATCTAACGATGAAGCAACTATGGAAGTTCTCTGTTCGTCATAG

Protein sequence

MGRKPNSSSPSLLFLIPQPPERRFPTSPPTGGGLRPENIEKAASHCRSSLSVFRRLRSPRAAVPFGSHRIDRRRAFGCWMKSGPQPGLLQIHSLTNQSNDEATMEVLCSS

Homology

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BLAST of Csor.00g030240 vs. NCBI nr
Match: KAG6577574.1 (hypothetical protein SDJN03_25148, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 228 bits (580), Expect = 3.10e-75
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MGRKPNSSSPSLLFLIPQPPERRFPTSPPTGGGLRPENIEKAASHCRSSLSVFRRLRSPR 60
           MGRKPNSSSPSLLFLIPQPPERRFPTSPPTGGGLRPENIEKAASHCRSSLSVFRRLRSPR
Sbjct: 1   MGRKPNSSSPSLLFLIPQPPERRFPTSPPTGGGLRPENIEKAASHCRSSLSVFRRLRSPR 60

Query: 61  AAVPFGSHRIDRRRAFGCWMKSGPQPGLLQIHSLTNQSNDEATMEVLCSS 110
           AAVPFGSHRIDRRRAFGCWMKSGPQPGLLQIHSLTNQSNDEATMEVLCSS
Sbjct: 61  AAVPFGSHRIDRRRAFGCWMKSGPQPGLLQIHSLTNQSNDEATMEVLCSS 110

The following BLAST results are available for this feature:

BLAST of Csor.00g030240 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g030240 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577574.1	3.10e-75	100.00	hypothetical protein SDJN03_25148, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g030240 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g030240 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g030240.m01	Csor.00g030240.m01	mRNA