Csor.00g030090 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g030090
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	acidic leucine-rich nuclear phosphoprotein 32 family member B-like
Location	Csor_Chr16: 7617657 .. 7618124 (+)
RNA-Seq Expression	Csor.00g030090
Synteny	Csor.00g030090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCTTCTCGTAACGGTTCGAAATCATGAGCCACGACGTCTTCTTCAACCTTCCTATCATAAGCTTTGTCAAGACGCTGAATTTAGTGCTCGTGAGGAAGACGAAGATAAAAGAGAAGATGATGAAGACGAAAATGCTGATAGTAGCGAAAATGAGAAAATAGATAGAGACAGAGATGAAATTGAACAATTGAACGAGGAAGATGAGGAAGATGCAGATAATGACGGTTTTGATGAAGATGAAGATAGAGATGGAGATGAAATTGAACAATCGAATGAGGAAGATGAAGATAATGACAGTGTTGACAAAGATGAAACCGAGCGGTGGGATGACGAAGAGGAAGAAGAAGAAGAGGAATTGGTGAGGAGGATAGAAGAATTCATAGCTAAGGAAAACAAGAGATGGAGAGAAGAGAAGTTGAGAGACAATTTATTTTTTCAAATTTGTTATAGTGATTGGAATTAA

mRNA sequence

ATGATTCTTCTCGTAACGGTTCGAAATCATGAGCCACGACGTCTTCTTCAACCTTCCTATCATAAGCTTTGTCAAGACGCTGAATTTAGTGCTCGTGAGGAAGACGAAGATAAAAGAGAAGATGATGAAGACGAAAATGCTGATAGTAGCGAAAATGAGAAAATAGATAGAGACAGAGATGAAATTGAACAATTGAACGAGGAAGATGAGGAAGATGCAGATAATGACGGTTTTGATGAAGATGAAGATAGAGATGGAGATGAAATTGAACAATCGAATGAGGAAGATGAAGATAATGACAGTGTTGACAAAGATGAAACCGAGCGGTGGGATGACGAAGAGGAAGAAGAAGAAGAGGAATTGGTGAGGAGGATAGAAGAATTCATAGCTAAGGAAAACAAGAGATGGAGAGAAGAGAAGTTGAGAGACAATTTATTTTTTCAAATTTGTTATAGTGATTGGAATTAA

Coding sequence (CDS)

ATGATTCTTCTCGTAACGGTTCGAAATCATGAGCCACGACGTCTTCTTCAACCTTCCTATCATAAGCTTTGTCAAGACGCTGAATTTAGTGCTCGTGAGGAAGACGAAGATAAAAGAGAAGATGATGAAGACGAAAATGCTGATAGTAGCGAAAATGAGAAAATAGATAGAGACAGAGATGAAATTGAACAATTGAACGAGGAAGATGAGGAAGATGCAGATAATGACGGTTTTGATGAAGATGAAGATAGAGATGGAGATGAAATTGAACAATCGAATGAGGAAGATGAAGATAATGACAGTGTTGACAAAGATGAAACCGAGCGGTGGGATGACGAAGAGGAAGAAGAAGAAGAGGAATTGGTGAGGAGGATAGAAGAATTCATAGCTAAGGAAAACAAGAGATGGAGAGAAGAGAAGTTGAGAGACAATTTATTTTTTCAAATTTGTTATAGTGATTGGAATTAA

Protein sequence

MILLVTVRNHEPRRLLQPSYHKLCQDAEFSAREEDEDKREDDEDENADSSENEKIDRDRDEIEQLNEEDEEDADNDGFDEDEDRDGDEIEQSNEEDEDNDSVDKDETERWDDEEEEEEEELVRRIEEFIAKENKRWREEKLRDNLFFQICYSDWN

Homology

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BLAST of Csor.00g030090 vs. NCBI nr
Match: KAG6577589.1 (hypothetical protein SDJN03_25163, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 267 bits (683), Expect = 1.72e-89
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MILLVTVRNHEPRRLLQPSYHKLCQDAEFSAREEDEDKREDDEDENADSSENEKIDRDRD 60
           MILLVTVRNHEPRRLLQPSYHKLCQDAEFSAREEDEDKREDDEDENADSSENEKIDRDRD
Sbjct: 1   MILLVTVRNHEPRRLLQPSYHKLCQDAEFSAREEDEDKREDDEDENADSSENEKIDRDRD 60

Query: 61  EIEQLNEEDEEDADNDGFDEDEDRDGDEIEQSNEEDEDNDSVDKDETERWDDEEEEEEEE 120
           EIEQLNEEDEEDADNDGFDEDEDRDGDEIEQSNEEDEDNDSVDKDETERWDDEEEEEEEE
Sbjct: 61  EIEQLNEEDEEDADNDGFDEDEDRDGDEIEQSNEEDEDNDSVDKDETERWDDEEEEEEEE 120

Query: 121 LVRRIEEFIAKENKRWREEKLRDNLFFQICYSDWN 155
           LVRRIEEFIAKENKRWREEKLRDNLFFQICYSDWN
Sbjct: 121 LVRRIEEFIAKENKRWREEKLRDNLFFQICYSDWN 155

[Close]

BLAST of Csor.00g030090 vs. NCBI nr
Match: XP_022923261.1 (nucleolin-like [Cucurbita moschata])

HSP 1 Score: 195 bits (495), Expect = 9.94e-61
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MILLVTVRNHEPRRLLQPSYHKLCQDAEFSAREEDEDKREDDEDENADSSENEKIDRDRD 60
           MILLVTVRNHEPR LLQPSYHKLCQDAEFSAREEDEDKREDDEDENADSSENEKIDRDRD
Sbjct: 37  MILLVTVRNHEPRCLLQPSYHKLCQDAEFSAREEDEDKREDDEDENADSSENEKIDRDRD 96

Query: 61  EIEQLNEEDEEDADNDGFDEDEDRDGDEIEQSNEEDEDNDSVDKDETERWDDEEEEEEEE 120
           EIEQLNEEDEEDADNDGFDEDEDRDGDEIEQSNEEDEDNDSVDKDETERWDDEEEEEEEE
Sbjct: 97  EIEQLNEEDEEDADNDGFDEDEDRDGDEIEQSNEEDEDNDSVDKDETERWDDEEEEEEEE 156

[Close]

BLAST of Csor.00g030090 vs. NCBI nr
Match: XP_023552966.1 (glutamic acid-rich protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 155 bits (392), Expect = 1.98e-44
Identity = 102/126 (80.95%), Postives = 107/126 (84.92%), Query Frame = 0


Query: 8   RNHEPRRLLQPSYHKLCQDAEFSAREEDEDKREDDEDENADSSENEKIDRDRDEIEQLNE 67
           RNHEPR  L PSYHKLCQDAEFSA EE+EDKRE+DEDENADSSENEKIDRDRDEIEQLNE
Sbjct: 69  RNHEPRPFLHPSYHKLCQDAEFSAHEEEEDKREEDEDENADSSENEKIDRDRDEIEQLNE 128

Query: 68  EDEEDADNDGFDEDEDRDGDEIEQSNEEDEDNDSVDKDETERWDDEEEEEEEELVRRIEE 127
           EDEEDADNDG DEDEDRDGDEIEQ NEEDEDNDSVD+DE ER ++EEEEEE E       
Sbjct: 129 EDEEDADNDGVDEDEDRDGDEIEQLNEEDEDNDSVDEDEAEREEEEEEEEELETGHHTRL 188

Query: 128 FIAKEN 133
           F  K N
Sbjct: 189 FFPKVN 194

[Close]

BLAST of Csor.00g030090 vs. NCBI nr
Match: XP_038876855.1 (glutamic acid-rich protein-like [Benincasa hispida])

HSP 1 Score: 81.3 bits (199), Expect = 1.20e-15
Identity = 75/168 (44.64%), Postives = 95/168 (56.55%), Query Frame = 0


Query: 1   MILLVTVRNHEPR----------RLLQPSYHKLCQDAEFSAREEDEDKREDDEDENAD-- 60
           +ILL+T+RNHEP            L    YHK  QD EFSA ++ ED RE+DEDE+ +  
Sbjct: 61  IILLITMRNHEPHPREQFEIMELTLQLSPYHKPHQDIEFSACDQREDTREEDEDEDKNVE 120

Query: 61  -SSENEKIDR--DRDEIEQLNEEDEEDADNDGFDEDEDRDGDEIEQSNEEDEDNDSVDKD 120
             ++NEK D   D DEI+QLNE++ ED DND          DE+                
Sbjct: 121 YGNKNEKEDEFNDEDEIKQLNEKEHEDEDNDR---------DEVG--------------- 180

Query: 121 ETERWDDEEEEEEEELVRRIEEFIAKENKRWREEKLRDNLFFQICYSD 153
                   +EEE+EEL +RIEEFIAK NKRWREEKLRD+L  QIC ++
Sbjct: 181 --------DEEEDEELEKRIEEFIAKVNKRWREEKLRDHLLIQICSNN 196

[Close]

BLAST of Csor.00g030090 vs. NCBI nr
Match: XP_023005569.1 (acidic leucine-rich nuclear phosphoprotein 32 family member B-like [Cucurbita maxima])

HSP 1 Score: 71.2 bits (173), Expect = 6.13e-12
Identity = 73/167 (43.71%), Postives = 91/167 (54.49%), Query Frame = 0


Query: 1   MILLVTVRNHEPRRLLQP--------------SYHKLCQDAEFSAREEDEDKREDDEDEN 60
           +ILL+ V  H P     P               Y+  CQ+ EF A +++ D     +DE 
Sbjct: 52  IILLIIVTYHRPPLHQSPYHIRKGSCYLESYQGYYTPCQNIEFYACDDEHDS----DDEY 111

Query: 61  ADSSENEKIDRDRDEIEQLNEEDEEDADNDGFDEDEDRDGDEIEQSNEEDEDNDSVDKDE 120
            D S+NEK     DEIEQLNE                   DE EQ +EEDED D  D+D+
Sbjct: 112 EDDSQNEK-----DEIEQLNE-------------------DETEQCDEEDEDVD--DEDD 171

Query: 121 TERWDDEEEEEEEELVRRIEEFIAKENKRWREEKLRDNLFFQICYSD 153
           TER D  E++ ++EL +RIEEFIAK NKRWREEKLRDNLF Q C S+
Sbjct: 172 TERCD--EKDNDDELEKRIEEFIAKVNKRWREEKLRDNLFNQFCSSN 186

[Close]

BLAST of Csor.00g030090 vs. ExPASy TrEMBL
Match: A0A6J1E6C0 (nucleolin-like OS=Cucurbita moschata OX=3662 GN=LOC111431005 PE=4 SV=1)

HSP 1 Score: 195 bits (495), Expect = 4.81e-61
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MILLVTVRNHEPRRLLQPSYHKLCQDAEFSAREEDEDKREDDEDENADSSENEKIDRDRD 60
           MILLVTVRNHEPR LLQPSYHKLCQDAEFSAREEDEDKREDDEDENADSSENEKIDRDRD
Sbjct: 37  MILLVTVRNHEPRCLLQPSYHKLCQDAEFSAREEDEDKREDDEDENADSSENEKIDRDRD 96

Query: 61  EIEQLNEEDEEDADNDGFDEDEDRDGDEIEQSNEEDEDNDSVDKDETERWDDEEEEEEEE 120
           EIEQLNEEDEEDADNDGFDEDEDRDGDEIEQSNEEDEDNDSVDKDETERWDDEEEEEEEE
Sbjct: 97  EIEQLNEEDEEDADNDGFDEDEDRDGDEIEQSNEEDEDNDSVDKDETERWDDEEEEEEEE 156

[Close]

BLAST of Csor.00g030090 vs. ExPASy TrEMBL
Match: A0A6J1KZL9 (acidic leucine-rich nuclear phosphoprotein 32 family member B-like OS=Cucurbita maxima OX=3661 GN=LOC111498513 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.97e-12
Identity = 73/167 (43.71%), Postives = 91/167 (54.49%), Query Frame = 0


Query: 1   MILLVTVRNHEPRRLLQP--------------SYHKLCQDAEFSAREEDEDKREDDEDEN 60
           +ILL+ V  H P     P               Y+  CQ+ EF A +++ D     +DE 
Sbjct: 52  IILLIIVTYHRPPLHQSPYHIRKGSCYLESYQGYYTPCQNIEFYACDDEHDS----DDEY 111

Query: 61  ADSSENEKIDRDRDEIEQLNEEDEEDADNDGFDEDEDRDGDEIEQSNEEDEDNDSVDKDE 120
            D S+NEK     DEIEQLNE                   DE EQ +EEDED D  D+D+
Sbjct: 112 EDDSQNEK-----DEIEQLNE-------------------DETEQCDEEDEDVD--DEDD 171

Query: 121 TERWDDEEEEEEEELVRRIEEFIAKENKRWREEKLRDNLFFQICYSD 153
           TER D  E++ ++EL +RIEEFIAK NKRWREEKLRDNLF Q C S+
Sbjct: 172 TERCD--EKDNDDELEKRIEEFIAKVNKRWREEKLRDNLFNQFCSSN 186

[Close]

BLAST of Csor.00g030090 vs. ExPASy TrEMBL
Match: A0A5D3D7D0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001210 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.58e-09
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 106 ETERWDDEEEEEEEELVRRIEEFIAKENKRWREEKLRDNLFFQICYSD 153
           E ERWD  EEEE+EEL +RIEEFIAK NKRWREEKLRD+L  QIC ++
Sbjct: 86  EAERWD--EEEEDEELEKRIEEFIAKVNKRWREEKLRDHLLIQICSTN 131

[Close]

BLAST of Csor.00g030090 vs. ExPASy TrEMBL
Match: A0A0A0L728 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036520 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.88e-08
Identity = 35/49 (71.43%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 105 DETERWDDEEEEEEEELVRRIEEFIAKENKRWREEKLRDNLFFQICYSD 153
           DE E WD  EEEE+EEL  RIEEFIAK NKRWREEKLRD+L  QIC ++
Sbjct: 88  DEAEGWD--EEEEDEELEMRIEEFIAKVNKRWREEKLRDHLLIQICSTN 134

The following BLAST results are available for this feature:

BLAST of Csor.00g030090 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g030090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577589.1	1.72e-89	100.00	hypothetical protein SDJN03_25163, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022923261.1	9.94e-61	99.17	nucleolin-like [Cucurbita moschata]	[more]
XP_023552966.1	1.98e-44	80.95	glutamic acid-rich protein-like [Cucurbita pepo subsp. pepo]	[more]
XP_038876855.1	1.20e-15	44.64	glutamic acid-rich protein-like [Benincasa hispida]	[more]
XP_023005569.1	6.13e-12	43.71	acidic leucine-rich nuclear phosphoprotein 32 family member B-like [Cucurbita ma...	[more]

BLAST of Csor.00g030090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E6C0	4.81e-61	99.17	nucleolin-like OS=Cucurbita moschata OX=3662 GN=LOC111431005 PE=4 SV=1	[more]
A0A6J1KZL9	2.97e-12	43.71	acidic leucine-rich nuclear phosphoprotein 32 family member B-like OS=Cucurbita ...	[more]
A0A5D3D7D0	3.58e-09	72.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L728	2.88e-08	71.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036520 PE=4 SV=1	[more]

BLAST of Csor.00g030090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 111..131
None	No IPR available	COILS	Coil	Coil	coord: 32..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g030090.m01	Csor.00g030090.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane