Csor.00g029910 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g029910
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionF-box protein At4g35733-like
LocationCsor_Chr16: 7713129 .. 7713407 (+)
RNA-Seq ExpressionCsor.00g029910
SyntenyCsor.00g029910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCCACACCATAGAGATGAGGGACATAGTTAACTCGTATATTTCAGAGTCTTCCAAAGGAGAGCATTTGGTTGTTTTGGGGATATTAGACATGGGAGAAGAACAATTCGAGACGGTCGACTTTGAAATTTACAAACTTATTTATGAGAATGAAGATGATATGCGAAGGGCGGTAGAAGTGAACAGCTTAGATGATGATGCTATTTTCATTGTTGACTCTCAGTCCATTTGTGTTTCAACTAAAGAGTCCATTTGTGTTTCAACTAAAGAATTGTGA

mRNA sequence

ATGGTCCACACCATAGAGATGAGGGACATAGTTAACTCGTATATTTCAGAGTCTTCCAAAGGAGAGCATTTGGTTGTTTTGGGGATATTAGACATGGGAGAAGAACAATTCGAGACGGTCGACTTTGAAATTTACAAACTTATTTATGAGAATGAAGATGATATGCGAAGGGCGGTAGAAGTGAACAGCTTAGATGATGATGCTATTTTCATTGTTGACTCTCAGTCCATTTGTGTTTCAACTAAAGAGTCCATTTGTGTTTCAACTAAAGAATTGTGA

Coding sequence (CDS)

ATGGTCCACACCATAGAGATGAGGGACATAGTTAACTCGTATATTTCAGAGTCTTCCAAAGGAGAGCATTTGGTTGTTTTGGGGATATTAGACATGGGAGAAGAACAATTCGAGACGGTCGACTTTGAAATTTACAAACTTATTTATGAGAATGAAGATGATATGCGAAGGGCGGTAGAAGTGAACAGCTTAGATGATGATGCTATTTTCATTGTTGACTCTCAGTCCATTTGTGTTTCAACTAAAGAGTCCATTTGTGTTTCAACTAAAGAATTGTGA

Protein sequence

MVHTIEMRDIVNSYISESSKGEHLVVLGILDMGEEQFETVDFEIYKLIYENEDDMRRAVEVNSLDDDAIFIVDSQSICVSTKESICVSTKEL
Homology
BLAST of Csor.00g029910 vs. NCBI nr
Match: KAG6577607.1 (hypothetical protein SDJN03_25181, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176 bits (446), Expect = 2.32e-55
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0

Query: 1  MVHTIEMRDIVNSYISESSKGEHLVVLGILDMGEEQFETVDFEIYKLIYENEDDMRRAVE 60
          MVHTIEMRDIVNSYISESSKGEHLVVLGILDMGEEQFETVDFEIYKLIYENEDDMRRAVE
Sbjct: 1  MVHTIEMRDIVNSYISESSKGEHLVVLGILDMGEEQFETVDFEIYKLIYENEDDMRRAVE 60

Query: 61 VNSLDDDAIFIVDSQSICVSTKESICVSTKEL 92
          VNSLDDDAIFIVDSQSICVSTKESICVSTKEL
Sbjct: 61 VNSLDDDAIFIVDSQSICVSTKESICVSTKEL 92

BLAST of Csor.00g029910 vs. NCBI nr
Match: XP_022923264.1 (uncharacterized protein LOC111431008 [Cucurbita moschata])

HSP 1 Score: 128 bits (322), Expect = 7.78e-34
Identity = 68/83 (81.93%), Postives = 74/83 (89.16%), Query Frame = 0

Query: 1   MVHTIEMRDIVNSYISESSKGEHLVVLGILDMGEEQFETVDFEIYKLIYENEDDMRRAVE 60
           MVHTIEM  +V SYI+ESSKGE LVVL ILD GEEQFETVDFE+YKLI+ENED+MRRAVE
Sbjct: 234 MVHTIEMGHMVTSYITESSKGELLVVLRILDSGEEQFETVDFEVYKLIHENEDEMRRAVE 293

Query: 61  VNSLDDDAIFIVDSQSICVSTKE 83
           + SLD DAIFI DSQSICVSTKE
Sbjct: 294 IKSLDGDAIFIGDSQSICVSTKE 316

BLAST of Csor.00g029910 vs. NCBI nr
Match: XP_022923263.1 (probable F-box protein At4g22165 [Cucurbita moschata])

HSP 1 Score: 129 bits (324), Expect = 1.93e-33
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 0

Query: 1   MVHTIEMRDIVNSYISESSKGEHLVVLGILDMGEEQFETVDFEIYKLIYENEDDMRRAVE 60
           MVHTIEM  +V SYI+ESSKGE LVVL ILD GEEQFETVDFE+YKLI+ENED+MRRAVE
Sbjct: 234 MVHTIEMGHLVTSYITESSKGELLVVLRILDSGEEQFETVDFEVYKLIHENEDEMRRAVE 293

Query: 61  VNSLDDDAIFIVDSQSICVSTKE 83
           V SLD DAIFI DSQSICVSTKE
Sbjct: 294 VKSLDGDAIFIGDSQSICVSTKE 316

BLAST of Csor.00g029910 vs. NCBI nr
Match: XP_023552955.1 (probable F-box protein At1g44080 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129 bits (323), Expect = 1.96e-33
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 0

Query: 1   MVHTIEMRDIVNSYISESSKGEHLVVLGILDMGEEQFETVDFEIYKLIYENEDDMRRAVE 60
           MVHTIEM  +V SYI+ESSKGE LVVL ILD GEEQFETVDFE+YKLI+ENED+MRRAVE
Sbjct: 234 MVHTIEMGHMVTSYITESSKGELLVVLRILDSGEEQFETVDFEVYKLIHENEDEMRRAVE 293

Query: 61  VNSLDDDAIFIVDSQSICVSTKE 83
           V SLD DAIFI DSQSICVSTKE
Sbjct: 294 VKSLDGDAIFIGDSQSICVSTKE 316

BLAST of Csor.00g029910 vs. NCBI nr
Match: XP_023552958.1 (probable F-box protein At4g22165 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127 bits (319), Expect = 7.68e-33
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0

Query: 1   MVHTIEMRDIVNSYISESSKGEHLVVLGILDMGEEQFETVDFEIYKLIYENEDDMRRAVE 60
           MVHTIEM   V SYI+ESSKGE LVVL ILD GEEQFETVDFE+YKLI+ENED+MRRAVE
Sbjct: 234 MVHTIEMGHWVTSYITESSKGELLVVLRILDSGEEQFETVDFEVYKLIHENEDEMRRAVE 293

Query: 61  VNSLDDDAIFIVDSQSICVSTKE 83
           V SLD DAIFI DSQSICVSTKE
Sbjct: 294 VKSLDGDAIFIGDSQSICVSTKE 316

BLAST of Csor.00g029910 vs. ExPASy TrEMBL
Match: A0A6J1E5W8 (uncharacterized protein LOC111431008 OS=Cucurbita moschata OX=3662 GN=LOC111431008 PE=4 SV=1)

HSP 1 Score: 128 bits (322), Expect = 3.77e-34
Identity = 68/83 (81.93%), Postives = 74/83 (89.16%), Query Frame = 0

Query: 1   MVHTIEMRDIVNSYISESSKGEHLVVLGILDMGEEQFETVDFEIYKLIYENEDDMRRAVE 60
           MVHTIEM  +V SYI+ESSKGE LVVL ILD GEEQFETVDFE+YKLI+ENED+MRRAVE
Sbjct: 234 MVHTIEMGHMVTSYITESSKGELLVVLRILDSGEEQFETVDFEVYKLIHENEDEMRRAVE 293

Query: 61  VNSLDDDAIFIVDSQSICVSTKE 83
           + SLD DAIFI DSQSICVSTKE
Sbjct: 294 IKSLDGDAIFIGDSQSICVSTKE 316

BLAST of Csor.00g029910 vs. ExPASy TrEMBL
Match: A0A6J1E923 (probable F-box protein At4g22165 OS=Cucurbita moschata OX=3662 GN=LOC111431007 PE=4 SV=1)

HSP 1 Score: 129 bits (324), Expect = 9.37e-34
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 0

Query: 1   MVHTIEMRDIVNSYISESSKGEHLVVLGILDMGEEQFETVDFEIYKLIYENEDDMRRAVE 60
           MVHTIEM  +V SYI+ESSKGE LVVL ILD GEEQFETVDFE+YKLI+ENED+MRRAVE
Sbjct: 234 MVHTIEMGHLVTSYITESSKGELLVVLRILDSGEEQFETVDFEVYKLIHENEDEMRRAVE 293

Query: 61  VNSLDDDAIFIVDSQSICVSTKE 83
           V SLD DAIFI DSQSICVSTKE
Sbjct: 294 VKSLDGDAIFIGDSQSICVSTKE 316

BLAST of Csor.00g029910 vs. ExPASy TrEMBL
Match: A0A6J1EBA6 (F-box protein At4g35733-like OS=Cucurbita moschata OX=3662 GN=LOC111431009 PE=4 SV=1)

HSP 1 Score: 123 bits (308), Expect = 5.08e-32
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = 0

Query: 1   MVHTIEMRDIVNSYISESSKGEHLVVLGILDMGEEQFETVDFEIYKLIYENEDDMRRAVE 60
           MVHTIEM  +V SYI+ESSKGE L+VL ILD GEEQFETV FE+YKLI+ENED+MRRAVE
Sbjct: 172 MVHTIEMGHMVTSYITESSKGELLIVLRILDSGEEQFETVGFEVYKLIHENEDEMRRAVE 231

Query: 61  VNSLDDDAIFIVDSQSICVSTKE 83
           V SLD  AIFI DSQSICVSTKE
Sbjct: 232 VKSLDGGAIFIGDSQSICVSTKE 254

BLAST of Csor.00g029910 vs. ExPASy TrEMBL
Match: A0A6J1E5P5 (probable F-box protein At1g65740 OS=Cucurbita moschata OX=3662 GN=LOC111431012 PE=4 SV=1)

HSP 1 Score: 117 bits (293), Expect = 2.33e-29
Identity = 63/83 (75.90%), Postives = 71/83 (85.54%), Query Frame = 0

Query: 1   MVHTIEMRDIVNSYISESSKGEHLVVLGILDMGEEQFETVDFEIYKLIYENEDDMRRAVE 60
           MVHT  +R I  +YI+ESSKGE LVVL I + GEEQFETVDFE+YKLI+ENED++RRAVE
Sbjct: 234 MVHTKRIRYIGTAYITESSKGELLVVLRIFNSGEEQFETVDFEVYKLIHENEDELRRAVE 293

Query: 61  VNSLDDDAIFIVDSQSICVSTKE 83
           V SLD DAIFI DSQSICVSTKE
Sbjct: 294 VKSLDGDAIFIGDSQSICVSTKE 316

BLAST of Csor.00g029910 vs. ExPASy TrEMBL
Match: A0A6J1E5P0 (uncharacterized protein LOC111431006 OS=Cucurbita moschata OX=3662 GN=LOC111431006 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.10e-19
Identity = 47/83 (56.63%), Postives = 61/83 (73.49%), Query Frame = 0

Query: 1   MVHTIEMRDIVNSYISESSKGEHLVVLGILDMGEEQFETVDFEIYKLIYENEDDMRRAVE 60
           M+H   + D+  SYI+ESSKGE L+VL  + + E Q ET  F++YKL +E E+ MRRAV+
Sbjct: 73  MIHDKMIDDLSRSYITESSKGELLLVLRSISVEETQLETTKFKVYKLTHERENGMRRAVK 132

Query: 61  VNSLDDDAIFIVDSQSICVSTKE 83
           V SLD D +FI DSQSICVSTK+
Sbjct: 133 VKSLDGDTMFIGDSQSICVSTKD 155

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6577607.12.32e-55100.00hypothetical protein SDJN03_25181, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022923264.17.78e-3481.93uncharacterized protein LOC111431008 [Cucurbita moschata][more]
XP_022923263.11.93e-3383.13probable F-box protein At4g22165 [Cucurbita moschata][more]
XP_023552955.11.96e-3383.13probable F-box protein At1g44080 [Cucurbita pepo subsp. pepo][more]
XP_023552958.17.68e-3383.13probable F-box protein At4g22165 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
A0A6J1E5W83.77e-3481.93uncharacterized protein LOC111431008 OS=Cucurbita moschata OX=3662 GN=LOC1114310... [more]
A0A6J1E9239.37e-3483.13probable F-box protein At4g22165 OS=Cucurbita moschata OX=3662 GN=LOC111431007 P... [more]
A0A6J1EBA65.08e-3279.52F-box protein At4g35733-like OS=Cucurbita moschata OX=3662 GN=LOC111431009 PE=4 ... [more]
A0A6J1E5P52.33e-2975.90probable F-box protein At1g65740 OS=Cucurbita moschata OX=3662 GN=LOC111431012 P... [more]
A0A6J1E5P02.10e-1956.63uncharacterized protein LOC111431006 OS=Cucurbita moschata OX=3662 GN=LOC1114310... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g029910.m01Csor.00g029910.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane