Csor.00g028800 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g028800
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr20: 4263753 .. 4264928 (-)
RNA-Seq ExpressionCsor.00g028800
SyntenyCsor.00g028800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTGGCTATGGACAGAAGAGGTTATTAAGCTTGATTTGGAGAAGGCATTTGATAAGGTCGATTGGAGGTTTCTTGATGCTATTCTCAAGGATAAAGGTTTTGGTTCCCTTGTCACTTTTCTGTTTCCAAAGGTGGACGGCATACTTTTATACAAGCCACTCTTTCTAATATGCCTATCTATTACCTTTCCATGTTTCATCTCCCGTCAAAGGTTGCTAACATGATGGACAAACTTCTTGGAGATTGTTTTGGTAAGGTACGCAAGGAAGGTGGATGCATGACGTTAATTGGTTAAAAACTCAGCTCCTTCAACTTTTGGGTGGACTTGGTATTGGTAATCTTAAACGGAATGAGGCTCGCCTAGCTAAATAGATTTGGTGTTGCTAAATGAACTTCGTGTGGGGCCAACTTATAGTGGCTAGTATTCCTCTTTGGATGCAGATTGTTTTGGCTTACTCCTATTGTCATGGTTCTTTCAAGTTCCCTTCGCGTTTCATTAGTTTGACTATCTCTCTTATTCATGATCATTTCCAATATCGAATAGGTCAAGGCCTTTATACGATCTTTTGACACTTGGCTTAATGGGGAAGTTCTTGCTACTGCCTTCCCTCCTTTGTATCAATTCTCGACCAGGTCGAGAATTCTTCTCAACATGCTTGGAATTTGAGACTTCGAGATCTTAATGAGTCTCTCCAACCATTTATCATATGTTATAATGAGGAATACAAATGATTCTGGGTATTGGCCTTTAGTCGGTGATTTGGCAGGATGAAGTTCTTCTATGGGAGCTTAGTCGCCTATTCTTAGAATCTTTCTTTCACTTCAAAATTTTATCCCATTTTTCCATTTTCAAATCTCCATTGCAGTGCAAAACATGAGCTGTCTCACCGTCTTCTTCACTCCTCTCTGTTGCTTCTAACTGTTCTTCTGAATGTCCGTGACAAAATCATCTTCTCACCATATCATAATTTTTTCTTATAGTCTTCTTGGTTTGGGTTTCTTTCGACGCAATGGCTAGAAAGAAAGAGCTAGTGGGACGAGCAGAGGAGCGTAATCCGCCAGTAGTGGCAGAGATGGGGAGCTCTGTTGTTGAAGCTACTAACCTTCTTGTGCCGTTGAGGTACTGTTTTCAGTGTGATTTTGGTTTCCAGTGCAGTTTAGTTTTGGGATAA

mRNA sequence

ATGTGTTGGCTATGGACAGAAGAGGTTATTAAGCTTGATTTGGAGAAGGCATTTGATAAGGTCGATTGGAGGTTTCTTGATGCTATTCTCAAGGATAAAGTCTTCTTGGTTTGGGTTTCTTTCGACGCAATGGCTAGAAAGAAAGAGCTAGTGGGACGAGCAGAGGAGCGTAATCCGCCAGTAGTGGCAGAGATGGGGAGCTCTGTTGTTGAAGCTACTAACCTTCTTGTGCCGTTGAGGTACTGTTTTCAGTGTGATTTTGGTTTCCAGTGCAGTTTAGTTTTGGGATAA

Coding sequence (CDS)

ATGTGTTGGCTATGGACAGAAGAGGTTATTAAGCTTGATTTGGAGAAGGCATTTGATAAGGTCGATTGGAGGTTTCTTGATGCTATTCTCAAGGATAAAGTCTTCTTGGTTTGGGTTTCTTTCGACGCAATGGCTAGAAAGAAAGAGCTAGTGGGACGAGCAGAGGAGCGTAATCCGCCAGTAGTGGCAGAGATGGGGAGCTCTGTTGTTGAAGCTACTAACCTTCTTGTGCCGTTGAGGTACTGTTTTCAGTGTGATTTTGGTTTCCAGTGCAGTTTAGTTTTGGGATAA

Protein sequence

MCWLWTEEVIKLDLEKAFDKVDWRFLDAILKDKVFLVWVSFDAMARKKELVGRAEERNPPVVAEMGSSVVEATNLLVPLRYCFQCDFGFQCSLVLG
Homology
[Close]
BLAST of Csor.00g028800 vs. NCBI nr
Match: KAG6571115.1 (hypothetical protein SDJN03_30030, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 202 bits (513), Expect = 1.85e-65
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MCWLWTEEVIKLDLEKAFDKVDWRFLDAILKDKVFLVWVSFDAMARKKELVGRAEERNPP 60
          MCWLWTEEVIKLDLEKAFDKVDWRFLDAILKDKVFLVWVSFDAMARKKELVGRAEERNPP
Sbjct: 1  MCWLWTEEVIKLDLEKAFDKVDWRFLDAILKDKVFLVWVSFDAMARKKELVGRAEERNPP 60

Query: 61 VVAEMGSSVVEATNLLVPLRYCFQCDFGFQCSLVLG 96
          VVAEMGSSVVEATNLLVPLRYCFQCDFGFQCSLVLG
Sbjct: 61 VVAEMGSSVVEATNLLVPLRYCFQCDFGFQCSLVLG 96

[Close]
BLAST of Csor.00g028800 vs. NCBI nr
Match: KAG6571112.1 (hypothetical protein SDJN03_30027, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137 bits (346), Expect = 5.68e-40
Identity = 73/86 (84.88%), Postives = 73/86 (84.88%), Query Frame = 0 

Query: 1  MCWLWTEEVIKLDLEKAFDKVDWRFLDAILKDKVF--LV----------WVSFDAMARKK 60
          MCWLWTEEVIKLDLEKAFDKVDWRFLDAILKDK F  LV          WVSFDAMARKK
Sbjct: 1  MCWLWTEEVIKLDLEKAFDKVDWRFLDAILKDKGFGSLVTFLFPKSSWFWVSFDAMARKK 60

Query: 61 ELVGRAEERNPPVVAEMGSSVVEATN 74
          ELVGRAEERNPPVVAEMGSSVVEATN
Sbjct: 61 ELVGRAEERNPPVVAEMGSSVVEATN 86

[Close]
BLAST of Csor.00g028800 vs. NCBI nr
Match: XP_022988724.1 (probable sphingolipid transporter spinster homolog 2 isoform X2 [Cucurbita maxima])

HSP 1 Score: 52.0 bits (123), Expect = 3.95e-05
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 44 MARKKELVGRAEERNPPVVAEMGSSVVEATN--LLVPLR 80
          MA K+ELVGRAEER+PPVVAEM SSVV+A+N     PLR
Sbjct: 1  MAGKEELVGRAEERSPPVVAEMESSVVDASNPSWFTPLR 39

[Close]
BLAST of Csor.00g028800 vs. NCBI nr
Match: XP_022988723.1 (probable sphingolipid transporter spinster homolog 2 isoform X1 [Cucurbita maxima])

HSP 1 Score: 52.0 bits (123), Expect = 4.01e-05
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 44 MARKKELVGRAEERNPPVVAEMGSSVVEATN--LLVPLR 80
          MA K+ELVGRAEER+PPVVAEM SSVV+A+N     PLR
Sbjct: 1  MAGKEELVGRAEERSPPVVAEMESSVVDASNPSWFTPLR 39

[Close]
BLAST of Csor.00g028800 vs. NCBI nr
Match: KAG7022517.1 (putative sphingolipid transporter spinster-like 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 51.6 bits (122), Expect = 5.37e-05
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 0 

Query: 44 MARKKELVGRAEERNPPVVAEMGSSVVEATN--LLVPLR 80
          MA K+ELVGRAEER PPVVAEM SSVV+A+N     PLR
Sbjct: 1  MAGKEELVGRAEERGPPVVAEMESSVVDASNPSWFTPLR 39

[Close]
BLAST of Csor.00g028800 vs. ExPASy TrEMBL
Match: A0A6J1JMD7 (probable sphingolipid transporter spinster homolog 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485975 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.91e-05
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 44 MARKKELVGRAEERNPPVVAEMGSSVVEATN--LLVPLR 80
          MA K+ELVGRAEER+PPVVAEM SSVV+A+N     PLR
Sbjct: 1  MAGKEELVGRAEERSPPVVAEMESSVVDASNPSWFTPLR 39

[Close]
BLAST of Csor.00g028800 vs. ExPASy TrEMBL
Match: A0A6J1JN48 (probable sphingolipid transporter spinster homolog 2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485975 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.94e-05
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 44 MARKKELVGRAEERNPPVVAEMGSSVVEATN--LLVPLR 80
          MA K+ELVGRAEER+PPVVAEM SSVV+A+N     PLR
Sbjct: 1  MAGKEELVGRAEERSPPVVAEMESSVVDASNPSWFTPLR 39

[Close]
BLAST of Csor.00g028800 vs. ExPASy TrEMBL
Match: A0A6J1EIA1 (probable sphingolipid transporter spinster homolog 2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111434598 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 2.64e-05
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 0 

Query: 44 MARKKELVGRAEERNPPVVAEMGSSVVEATN--LLVPLR 80
          MA K+ELVGRAEER PPVVAEM SSVV+A+N     PLR
Sbjct: 1  MAGKEELVGRAEERGPPVVAEMESSVVDASNPSWFTPLR 39

[Close]
BLAST of Csor.00g028800 vs. ExPASy TrEMBL
Match: A0A6J1CVL8 (uncharacterized protein LOC111015185 OS=Momordica charantia OX=3673 GN=LOC111015185 PE=4 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 4.85e-04
Identity = 26/45 (57.78%), Postives = 30/45 (66.67%), Query Frame = 0 

Query: 9  VIKLDLEKAFDKVDWRFLDAILKDKVFLVWVSFDAMARKKELVGR 53
          VIKLD+EKAFDKVDW FLD +LK K F+V    D  +R   L  R
Sbjct: 45 VIKLDIEKAFDKVDWDFLDDLLKAKGFVV----DVFSRLMSLSAR 85

The following BLAST results are available for this feature:
BLAST of Csor.00g028800 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g028800 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571115.11.85e-65100.00hypothetical protein SDJN03_30030, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571112.15.68e-4084.88hypothetical protein SDJN03_30027, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022988724.13.95e-0571.79probable sphingolipid transporter spinster homolog 2 isoform X2 [Cucurbita maxim... [more]
XP_022988723.14.01e-0571.79probable sphingolipid transporter spinster homolog 2 isoform X1 [Cucurbita maxim... [more]
KAG7022517.15.37e-0571.79putative sphingolipid transporter spinster-like 2 [Cucurbita argyrosperma subsp.... [more]
BLAST of Csor.00g028800 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JMD71.91e-0571.79probable sphingolipid transporter spinster homolog 2 isoform X2 OS=Cucurbita max... [more]
A0A6J1JN481.94e-0571.79probable sphingolipid transporter spinster homolog 2 isoform X1 OS=Cucurbita max... [more]
A0A6J1EIA12.64e-0571.79probable sphingolipid transporter spinster homolog 2 isoform X1 OS=Cucurbita mos... [more]
A0A6J1CVL84.85e-0457.78uncharacterized protein LOC111015185 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
BLAST of Csor.00g028800 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g028800.m01Csor.00g028800.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0022857 transmembrane transporter activity