Csor.00g028710 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g028710
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr20: 4303195 .. 4303888 (-)
RNA-Seq Expression	Csor.00g028710
Synteny	Csor.00g028710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACCACTTCATTTTTGGGCGTTAGCCTTCCAGGTTTACTCTTCATTTAGCTTGTTGTTTAACTCCACTATATTTTATCTTAGCTATATATCATCATATCGTAGTCCTTGGGAAGGCTTAACTCCTGCTGTATTAATTATGTGACCCAACCTCTACTTTGTCAGCGTATTTTTTTACCCTCTTTTTAGGACACATCTTACCTGAAAGGGGGCAGATTTCATTCGTTGGGGGGAGCAATCAATTTGCTTCACAGATATATGTAAGACAACACAAATTTATCTTGACACCAAACATTCCTTACTGTTGAGAAAAGTGCACTTCAAATTATCAATAAATTTCATTCCGAACTTGGTTATTATTTGAATGTGGATCAATATACGAAGCAAATGGCTTCTATTTCAAGTAGGCTTTGGCAGAAAACTGTTCATACGAAATCCGATGTTCGTTTATTGGGCGGATTTTGAGTATTTGACGCCATTATACCAGGTAAGTTGGTTCTTATATCAAGAACTTTTAGATTAGAAGTTAAATTTGCTGATTAATTGCCTTGTCATTACTCATCTCATCTACAGTGTTGCTATATTTTCCTTTCAAGTTATATAACTGCTACATCTTTCAGGAAAATAAAAATCCGAGAACGGGCCAAAATGCTGGTTTTGATCTTAAACATCTTTTCGTCCACTTGGAGTAA

mRNA sequence

ATGAAACCACTTCATTTTTGGGCGTTAGCCTTCCAGGACACATCTTACCTGAAAGGGGGCAGATTTCATTCGTTGGGGGGAGCAATCAATTTGCTTCACAGATATATCAAATGGCTTCTATTTCAAGTAGGCTTTGGCAGAAAACTGTTCATACGAAATCCGATGTTCGTTTATTGGGCGGATTTTGAGTATTTGACGCCATTATACCAGGAAAATAAAAATCCGAGAACGGGCCAAAATGCTGGTTTTGATCTTAAACATCTTTTCGTCCACTTGGAGTAA

Coding sequence (CDS)

ATGAAACCACTTCATTTTTGGGCGTTAGCCTTCCAGGACACATCTTACCTGAAAGGGGGCAGATTTCATTCGTTGGGGGGAGCAATCAATTTGCTTCACAGATATATCAAATGGCTTCTATTTCAAGTAGGCTTTGGCAGAAAACTGTTCATACGAAATCCGATGTTCGTTTATTGGGCGGATTTTGAGTATTTGACGCCATTATACCAGGAAAATAAAAATCCGAGAACGGGCCAAAATGCTGGTTTTGATCTTAAACATCTTTTCGTCCACTTGGAGTAA

Protein sequence

MKPLHFWALAFQDTSYLKGGRFHSLGGAINLLHRYIKWLLFQVGFGRKLFIRNPMFVYWADFEYLTPLYQENKNPRTGQNAGFDLKHLFVHLE

Homology

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BLAST of Csor.00g028710 vs. NCBI nr
Match: KAG6571124.1 (hypothetical protein SDJN03_30039, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 204 bits (518), Expect = 2.56e-66
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MKPLHFWALAFQDTSYLKGGRFHSLGGAINLLHRYIKWLLFQVGFGRKLFIRNPMFVYWA 60
          MKPLHFWALAFQDTSYLKGGRFHSLGGAINLLHRYIKWLLFQVGFGRKLFIRNPMFVYWA
Sbjct: 1  MKPLHFWALAFQDTSYLKGGRFHSLGGAINLLHRYIKWLLFQVGFGRKLFIRNPMFVYWA 60

Query: 61 DFEYLTPLYQENKNPRTGQNAGFDLKHLFVHLE 93
          DFEYLTPLYQENKNPRTGQNAGFDLKHLFVHLE
Sbjct: 61 DFEYLTPLYQENKNPRTGQNAGFDLKHLFVHLE 93

The following BLAST results are available for this feature:

BLAST of Csor.00g028710 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g028710 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571124.1	2.56e-66	100.00	hypothetical protein SDJN03_30039, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g028710 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g028710 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 92..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g028710.m01	Csor.00g028710.m01	mRNA