Csor.00g028680 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g028680
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	organ-specific protein P4-like
Location	Csor_Chr20: 4321877 .. 4322350 (-)
RNA-Seq Expression	Csor.00g028680
Synteny	Csor.00g028680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTGTCTCTTGCTTTCTTTCTTCTCCTTTCTCTTGTTCTGGTAAGCTTTCGATCGATTTGATCGGTTTAGAGTTATAAATATTACGATCGAAGTTAAAAAAATTTGATTTTGATTTCGTTAGCTGAAGAACGAAGAGTTATCGATCGATGGTTTTCGTTTTCGTTACGAAATTTGACGAGTTTTTTTATAATTTAGTTCGTAGATGTTAGCCATGGAAGCAGGAAAGATCAAGGGAAGTATTGGAAAAAGATGATGAAAAATGAAGAAATTCCAGAGATGTTGAAAGAGCTGTTGTTTGATGATTCAATGGTGGAGAATCAAAAGCAACGGTTTATGAACAACTTTGATCCTCATCCAAATGCTATAATATACCATGCTCATGCTCATGCTCATGGCCATGGGGCTGCTACTCCTACGCGTAATATTGATATCAAATCCAACCCCACTGTTGCCAATTCAGCACCATGA

mRNA sequence

ATGAAGCTGTCTCTTGCTTTCTTTCTTCTCCTTTCTCTTGTTCTGTTCGTAGATGTTAGCCATGGAAGCAGGAAAGATCAAGGGAAGTATTGGAAAAAGATGATGAAAAATGAAGAAATTCCAGAGATGTTGAAAGAGCTGTTGTTTGATGATTCAATGGTGGAGAATCAAAAGCAACGGTTTATGAACAACTTTGATCCTCATCCAAATGCTATAATATACCATGCTCATGCTCATGCTCATGGCCATGGGGCTGCTACTCCTACGCGTAATATTGATATCAAATCCAACCCCACTGTTGCCAATTCAGCACCATGA

Coding sequence (CDS)

ATGAAGCTGTCTCTTGCTTTCTTTCTTCTCCTTTCTCTTGTTCTGTTCGTAGATGTTAGCCATGGAAGCAGGAAAGATCAAGGGAAGTATTGGAAAAAGATGATGAAAAATGAAGAAATTCCAGAGATGTTGAAAGAGCTGTTGTTTGATGATTCAATGGTGGAGAATCAAAAGCAACGGTTTATGAACAACTTTGATCCTCATCCAAATGCTATAATATACCATGCTCATGCTCATGCTCATGGCCATGGGGCTGCTACTCCTACGCGTAATATTGATATCAAATCCAACCCCACTGTTGCCAATTCAGCACCATGA

Protein sequence

MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQRFMNNFDPHPNAIIYHAHAHAHGHGAATPTRNIDIKSNPTVANSAP

Homology

[Close]

BLAST of Csor.00g028680 vs. ExPASy Swiss-Prot
Match: P17771 (Organ-specific protein P4 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.4e-05
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 8  FLLLSLVLFVDVSH-GSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQRFMNN-- 67
          F LL L LF+ V++  SRKD G+YWK +MK++++PE ++ LL D S ++N K     N  
Sbjct: 8  FALLPLFLFLIVANVESRKDVGEYWKLVMKDQDMPEEIQGLL-DASNIKNSKTHAKENKG 67

Query: 68 ----FDPHPNAIIY 75
              F+P PNA  Y
Sbjct: 68 AIGEFEPCPNASAY 80

[Close]

BLAST of Csor.00g028680 vs. ExPASy Swiss-Prot
Match: P17772 (Organ-specific protein S2 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.4e-04
Identity = 36/102 (35.29%), Postives = 51/102 (50.00%), Query Frame = 0


Query: 1   MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60
           M L  AF LL   +L +  +  SRKD G+YWK +MK++++PE ++ LL D S ++N K  
Sbjct: 1   MSLRSAFALLPLFLLLIVANVESRKDVGEYWKLVMKDQDMPEEIQGLL-DASNIKNSKTH 60

Query: 61  FMNN------FDPHPNAIIY-----HAHAHAHGHGAATPTRN 92
              N      F+P P A  Y     HA  +    G   P  N
Sbjct: 61  AKENMGAIGEFEPRPYASAYGDNEIHAKENMGAIGEFEPRPN 101

[Close]

BLAST of Csor.00g028680 vs. NCBI nr
Match: KAG6571127.1 (hypothetical protein SDJN03_30042, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010938.1 hypothetical protein SDJN02_27736, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211 bits (537), Expect = 7.80e-69
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60
           MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR
Sbjct: 1   MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60

Query: 61  FMNNFDPHPNAIIYHAHAHAHGHGAATPTRNIDIKSNPTVANSAP 105
           FMNNFDPHPNAIIYHAHAHAHGHGAATPTRNIDIKSNPTVANSAP
Sbjct: 61  FMNNFDPHPNAIIYHAHAHAHGHGAATPTRNIDIKSNPTVANSAP 105

[Close]

BLAST of Csor.00g028680 vs. NCBI nr
Match: XP_022944721.1 (organ-specific protein P4-like [Cucurbita moschata])

HSP 1 Score: 210 bits (535), Expect = 1.57e-68
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60
           MKLSLAFFLL+SLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR
Sbjct: 1   MKLSLAFFLLISLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60

Query: 61  FMNNFDPHPNAIIYHAHAHAHGHGAATPTRNIDIKSNPTVANSAP 105
           FMNNFDPHPNAIIYHAHAHAHGHGAATPTRNIDIKSNPTVANSAP
Sbjct: 61  FMNNFDPHPNAIIYHAHAHAHGHGAATPTRNIDIKSNPTVANSAP 105

[Close]

BLAST of Csor.00g028680 vs. NCBI nr
Match: XP_022986644.1 (organ-specific protein S2-like [Cucurbita maxima])

HSP 1 Score: 201 bits (512), Expect = 5.42e-65
Identity = 103/107 (96.26%), Postives = 103/107 (96.26%), Query Frame = 0


Query: 1   MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60
           MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR
Sbjct: 1   MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60

Query: 61  FMNNFDPHPNAIIYHAHAHAH--GHGAATPTRNIDIKSNPTVANSAP 105
           FMNNFDPHPNAIIYHAHAHAH  GHGAATP RNIDIK NPTVANSAP
Sbjct: 61  FMNNFDPHPNAIIYHAHAHAHAHGHGAATPRRNIDIKFNPTVANSAP 107

[Close]

BLAST of Csor.00g028680 vs. NCBI nr
Match: XP_023513271.1 (organ-specific protein S2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 200 bits (509), Expect = 1.46e-64
Identity = 101/105 (96.19%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 1   MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60
           MKLSLAFFLLLSLVLFVDVS GSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR
Sbjct: 1   MKLSLAFFLLLSLVLFVDVSDGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60

Query: 61  FMNNFDPHPNAIIYHAHAHAHGHGAATPTRNIDIKSNPTVANSAP 105
           FMNNFDPHPNAIIYHAHAHAHGHGAATP RNIDIK NPT ANSAP
Sbjct: 61  FMNNFDPHPNAIIYHAHAHAHGHGAATPRRNIDIKFNPTGANSAP 105

[Close]

BLAST of Csor.00g028680 vs. NCBI nr
Match: XP_022148637.1 (organ-specific protein P4 [Momordica charantia])

HSP 1 Score: 117 bits (293), Expect = 1.05e-31
Identity = 65/104 (62.50%), Postives = 79/104 (75.96%), Query Frame = 0


Query: 1   MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60
           MKLS+AFFLLLSL+LF +  +G RKDQG+YWKK+MK EEIPE+LKELL+DDS V  Q +R
Sbjct: 1   MKLSVAFFLLLSLLLFAEGGYG-RKDQGEYWKKIMKEEEIPEVLKELLYDDS-VGGQNER 60

Query: 61  FMNNFDPHPNAIIYHAHAHAHGHGAATPTRNIDIKSNPTVANSA 104
           FM+NFDPHPNAIIYH+H+H    GAA    + D K      +SA
Sbjct: 61  FMSNFDPHPNAIIYHSHSH----GAAAGHEHSDEKIKAAAGDSA 98

[Close]

BLAST of Csor.00g028680 vs. ExPASy TrEMBL
Match: A0A6J1FYV4 (organ-specific protein P4-like OS=Cucurbita moschata OX=3662 GN=LOC111449094 PE=4 SV=1)

HSP 1 Score: 210 bits (535), Expect = 7.62e-69
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60
           MKLSLAFFLL+SLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR
Sbjct: 1   MKLSLAFFLLISLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60

Query: 61  FMNNFDPHPNAIIYHAHAHAHGHGAATPTRNIDIKSNPTVANSAP 105
           FMNNFDPHPNAIIYHAHAHAHGHGAATPTRNIDIKSNPTVANSAP
Sbjct: 61  FMNNFDPHPNAIIYHAHAHAHGHGAATPTRNIDIKSNPTVANSAP 105

[Close]

BLAST of Csor.00g028680 vs. ExPASy TrEMBL
Match: A0A6J1JGL9 (organ-specific protein S2-like OS=Cucurbita maxima OX=3661 GN=LOC111484322 PE=4 SV=1)

HSP 1 Score: 201 bits (512), Expect = 2.62e-65
Identity = 103/107 (96.26%), Postives = 103/107 (96.26%), Query Frame = 0


Query: 1   MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60
           MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR
Sbjct: 1   MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60

Query: 61  FMNNFDPHPNAIIYHAHAHAH--GHGAATPTRNIDIKSNPTVANSAP 105
           FMNNFDPHPNAIIYHAHAHAH  GHGAATP RNIDIK NPTVANSAP
Sbjct: 61  FMNNFDPHPNAIIYHAHAHAHAHGHGAATPRRNIDIKFNPTVANSAP 107

[Close]

BLAST of Csor.00g028680 vs. ExPASy TrEMBL
Match: A0A6J1D5L4 (organ-specific protein P4 OS=Momordica charantia OX=3673 GN=LOC111017249 PE=4 SV=1)

HSP 1 Score: 117 bits (293), Expect = 5.09e-32
Identity = 65/104 (62.50%), Postives = 79/104 (75.96%), Query Frame = 0


Query: 1   MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60
           MKLS+AFFLLLSL+LF +  +G RKDQG+YWKK+MK EEIPE+LKELL+DDS V  Q +R
Sbjct: 1   MKLSVAFFLLLSLLLFAEGGYG-RKDQGEYWKKIMKEEEIPEVLKELLYDDS-VGGQNER 60

Query: 61  FMNNFDPHPNAIIYHAHAHAHGHGAATPTRNIDIKSNPTVANSA 104
           FM+NFDPHPNAIIYH+H+H    GAA    + D K      +SA
Sbjct: 61  FMSNFDPHPNAIIYHSHSH----GAAAGHEHSDEKIKAAAGDSA 98

[Close]

BLAST of Csor.00g028680 vs. ExPASy TrEMBL
Match: A0A0A0LP62 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245500 PE=4 SV=1)

HSP 1 Score: 110 bits (275), Expect = 3.04e-29
Identity = 59/91 (64.84%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 1  MKLSLAFFLLLSLVLFVDVSHG-SRKDQGKYWKKMMKNEEIPEMLKELLFD----DSMVE 60
          MKLS+AFF LLSL+L  D++HG SRK++G+YWKK+MK E +PEMLKELL +     SMVE
Sbjct: 1  MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60

Query: 61 -----NQKQRFMNNFDPHPNAIIYHAHAHAH 81
                QK+ F+ NFDPHPNAIIYHAHAHAH
Sbjct: 61 YNNNKQQKEHFLTNFDPHPNAIIYHAHAHAH 91

[Close]

BLAST of Csor.00g028680 vs. ExPASy TrEMBL
Match: A0A6J1L3N5 (organ-specific protein P4-like OS=Cucurbita maxima OX=3661 GN=LOC111499606 PE=4 SV=1)

HSP 1 Score: 103 bits (258), Expect = 9.05e-27
Identity = 58/86 (67.44%), Postives = 69/86 (80.23%), Query Frame = 0


Query: 1  MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDD-SMVEN--Q 60
          MKLS AFFLL SL+L  +VSH  RK++G+YWKK+MK+E IPEMLKELLFDD S+V +  Q
Sbjct: 1  MKLSAAFFLL-SLLLLANVSHA-RKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQ 60

Query: 61 KQRFMNNFDPHPNAIIYHAHAHAHGH 83
           +RFMNNFD HPNAIIYH+H   H H
Sbjct: 61 SERFMNNFDTHPNAIIYHSHGATHDH 84

[Close]

BLAST of Csor.00g028680 vs. TAIR 10
Match: AT1G49310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; Has 11 Blast hits to 11 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 4.8e-09
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 5  LAFFLLLSLVLFVDVSHGSRKDQG-KYWKKMMKNEEIPEMLKELLFDDSMVENQKQRFMN 64
          + F +LLS +LFV++S G       +YWKKMMKNE +PE +KELL  ++     ++RF+ 
Sbjct: 9  VVFIVLLSFLLFVNLSEGRTGGVAEEYWKKMMKNEPLPEPIKELL--NNPFRTAQERFIQ 68

Query: 65 NFDPHPNAIIYH 76
          NFD     IIYH
Sbjct: 69 NFDTKSVVIIYH 78

The following BLAST results are available for this feature:

BLAST of Csor.00g028680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P17771	2.4e-05	43.24	Organ-specific protein P4 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
P17772	3.4e-04	35.29	Organ-specific protein S2 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]

BLAST of Csor.00g028680 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571127.1	7.80e-69	100.00	hypothetical protein SDJN03_30042, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022944721.1	1.57e-68	99.05	organ-specific protein P4-like [Cucurbita moschata]	[more]
XP_022986644.1	5.42e-65	96.26	organ-specific protein S2-like [Cucurbita maxima]	[more]
XP_023513271.1	1.46e-64	96.19	organ-specific protein S2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022148637.1	1.05e-31	62.50	organ-specific protein P4 [Momordica charantia]	[more]

BLAST of Csor.00g028680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FYV4	7.62e-69	99.05	organ-specific protein P4-like OS=Cucurbita moschata OX=3662 GN=LOC111449094 PE=...	[more]
A0A6J1JGL9	2.62e-65	96.26	organ-specific protein S2-like OS=Cucurbita maxima OX=3661 GN=LOC111484322 PE=4 ...	[more]
A0A6J1D5L4	5.09e-32	62.50	organ-specific protein P4 OS=Momordica charantia OX=3673 GN=LOC111017249 PE=4 SV...	[more]
A0A0A0LP62	3.04e-29	64.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245500 PE=4 SV=1	[more]
A0A6J1L3N5	9.05e-27	67.44	organ-specific protein P4-like OS=Cucurbita maxima OX=3661 GN=LOC111499606 PE=4 ...	[more]

BLAST of Csor.00g028680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49310.1	4.8e-09	45.83	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024489	Organ specific protein	PFAM	PF10950	Organ_specific	coord: 25..75 e-value: 4.9E-6 score: 27.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..105
None	No IPR available	PANTHER	PTHR33731:SF2	PROTEIN, PUTATIVE-RELATED	coord: 1..97
None	No IPR available	PANTHER	PTHR33731	PROTEIN, PUTATIVE-RELATED	coord: 1..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g028680.m01	Csor.00g028680.m01	mRNA