Csor.00g028420 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g028420
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr20: 4475796 .. 4476119 (-)
RNA-Seq ExpressionCsor.00g028420
SyntenyCsor.00g028420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCTTTCGGGATGGTGGGGTTGGTGGCGGTGATTGCTGTCGGGATGGTGGTGTTCGTGACCGTCGTGATTGTGGTGGTGGAGGCGTGATTGTTGCATGGTGTGGTGATGGTGGTGTTCGAGGACGTCGTGAACGTAATGGTGGTGGTGGTGATGGCATTTGTTGTGATGGTGGTGTTCGAGGACGTCGTGATCTTGGTGGTGATGGTGGTAGGGATTGTGATGGCGGTGTTCGAGAGGTTGGTGATGTAGGTGGTGGCGGAGACGGGTTGTGGGTAGGGTTGAAAGGGGAAGAGCAATTATGTGCCCAAAACCAAGGCTGA

mRNA sequence

ATGATCTTTCGGGATGGTGGGGTTGGTGGCGGTGATTGCTGTCGGGATGGTGGTGTTCGTGACCGTCGTGATTGTGGTGGTGGAGGCGTGATTGTTGCATGGTGTGGTGATGGTGGTGTTCGAGGACGTCGTGAACGTAATGGTGGTGGTGGTGATGGCATTTGTTGTGATGGTGGTGTTCGAGGACGTCGTGATCTTGGTGGTGATGGTGGTAGGGATTGTGATGGCGGTGTTCGAGAGGTTGGTGATGTAGGTGGTGGCGGAGACGGGTTGTGGGTAGGGTTGAAAGGGGAAGAGCAATTATGTGCCCAAAACCAAGGCTGA

Coding sequence (CDS)

ATGATCTTTCGGGATGGTGGGGTTGGTGGCGGTGATTGCTGTCGGGATGGTGGTGTTCGTGACCGTCGTGATTGTGGTGGTGGAGGCGTGATTGTTGCATGGTGTGGTGATGGTGGTGTTCGAGGACGTCGTGAACGTAATGGTGGTGGTGGTGATGGCATTTGTTGTGATGGTGGTGTTCGAGGACGTCGTGATCTTGGTGGTGATGGTGGTAGGGATTGTGATGGCGGTGTTCGAGAGGTTGGTGATGTAGGTGGTGGCGGAGACGGGTTGTGGGTAGGGTTGAAAGGGGAAGAGCAATTATGTGCCCAAAACCAAGGCTGA

Protein sequence

MIFRDGGVGGGDCCRDGGVRDRRDCGGGGVIVAWCGDGGVRGRRERNGGGGDGICCDGGVRGRRDLGGDGGRDCDGGVREVGDVGGGGDGLWVGLKGEEQLCAQNQG
Homology
[Close]
BLAST of Csor.00g028420 vs. NCBI nr
Match: KAG6571153.1 (hypothetical protein SDJN03_30068, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 219 bits (557), Expect = 8.02e-72
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MIFRDGGVGGGDCCRDGGVRDRRDCGGGGVIVAWCGDGGVRGRRERNGGGGDGICCDGGV 60
           MIFRDGGVGGGDCCRDGGVRDRRDCGGGGVIVAWCGDGGVRGRRERNGGGGDGICCDGGV
Sbjct: 1   MIFRDGGVGGGDCCRDGGVRDRRDCGGGGVIVAWCGDGGVRGRRERNGGGGDGICCDGGV 60

Query: 61  RGRRDLGGDGGRDCDGGVREVGDVGGGGDGLWVGLKGEEQLCAQNQG 107
           RGRRDLGGDGGRDCDGGVREVGDVGGGGDGLWVGLKGEEQLCAQNQG
Sbjct: 61  RGRRDLGGDGGRDCDGGVREVGDVGGGGDGLWVGLKGEEQLCAQNQG 107

[Close]
BLAST of Csor.00g028420 vs. ExPASy TrEMBL
Match: A0A0A0LKZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G234590 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.31e-04
Identity = 47/89 (52.81%), Postives = 49/89 (55.06%), Query Frame = 0 

Query: 9   GGGDCCRDGGVRDRRDCGGGGVIVAWCGDGGVRGRRERNGGGGD-GICCDGGVRGRRDLG 68
           GGGD   DGG  D    GGGG +      GGVRG R   GGGG+ G  CDGGVR RRD G
Sbjct: 52  GGGDTIGDGGGGDDSIGGGGGGVRGRRDGGGVRGCRGGGGGGGNRGHRCDGGVRRRRDGG 111

Query: 69  GDGGRDCDGGVREVGDVG-----GGGDGL 91
           G  G   DGGVR   D G     GG DGL
Sbjct: 112 G--GNRRDGGVRGYRDGGSRRNGGGRDGL 138

The following BLAST results are available for this feature:
BLAST of Csor.00g028420 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g028420 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571153.18.02e-72100.00hypothetical protein SDJN03_30068, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g028420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKZ51.31e-0452.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G234590 PE=4 SV=1[more]
BLAST of Csor.00g028420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g028420.m01Csor.00g028420.m01mRNA