Csor.00g028400 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g028400
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr20: 4483707 .. 4484006 (+)
RNA-Seq ExpressionCsor.00g028400
SyntenyCsor.00g028400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTTGAATCCGGGAGGGGGTTTGAGCGGCCGGATTTTACCGCCGTCGAAGAGCTCATCGGCGGAGAGAGAAGCTTTAGTGCAGAGCGACTGGCGGCTGAAATCAAATTCAAAATCCTGCTCGGCGGAGCAATTGGGGGATTTGGGAATGCCGGGTTTCTCCTCCCAGCGGAAGGGGACGGCGGAGGGAGAGCCAATCGGAACGTCGTCGTCGTGGCGGAAGAAGTTGACGGCGAGAGAGGAGGGGCTGGTGGGCGCACTAAGGGAGGAGAAGGGAGTGGAAGGAGCGGAGAGATAG

mRNA sequence

ATGACCTTGAATCCGGGAGGGGGTTTGAGCGGCCGGATTTTACCGCCGTCGAAGAGCTCATCGGCGGAGAGAGAAGCTTTAGTGCAGAGCGACTGGCGGCTGAAATCAAATTCAAAATCCTGCTCGGCGGAGCAATTGGGGGATTTGGGAATGCCGGGTTTCTCCTCCCAGCGGAAGGGGACGGCGGAGGGAGAGCCAATCGGAACGTCGTCGTCGTGGCGGAAGAAGTTGACGGCGAGAGAGGAGGGGCTGGTGGGCGCACTAAGGGAGGAGAAGGGAGTGGAAGGAGCGGAGAGATAG

Coding sequence (CDS)

ATGACCTTGAATCCGGGAGGGGGTTTGAGCGGCCGGATTTTACCGCCGTCGAAGAGCTCATCGGCGGAGAGAGAAGCTTTAGTGCAGAGCGACTGGCGGCTGAAATCAAATTCAAAATCCTGCTCGGCGGAGCAATTGGGGGATTTGGGAATGCCGGGTTTCTCCTCCCAGCGGAAGGGGACGGCGGAGGGAGAGCCAATCGGAACGTCGTCGTCGTGGCGGAAGAAGTTGACGGCGAGAGAGGAGGGGCTGGTGGGCGCACTAAGGGAGGAGAAGGGAGTGGAAGGAGCGGAGAGATAG

Protein sequence

MTLNPGGGLSGRILPPSKSSSAEREALVQSDWRLKSNSKSCSAEQLGDLGMPGFSSQRKGTAEGEPIGTSSSWRKKLTAREEGLVGALREEKGVEGAER
Homology
BLAST of Csor.00g028400 vs. NCBI nr
Match: KAG6571156.1 (hypothetical protein SDJN03_30071, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 191 bits (485), Expect = 4.32e-61
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0

Query: 1  MTLNPGGGLSGRILPPSKSSSAEREALVQSDWRLKSNSKSCSAEQLGDLGMPGFSSQRKG 60
          MTLNPGGGLSGRILPPSKSSSAEREALVQSDWRLKSNSKSCSAEQLGDLGMPGFSSQRKG
Sbjct: 1  MTLNPGGGLSGRILPPSKSSSAEREALVQSDWRLKSNSKSCSAEQLGDLGMPGFSSQRKG 60

Query: 61 TAEGEPIGTSSSWRKKLTAREEGLVGALREEKGVEGAER 99
          TAEGEPIGTSSSWRKKLTAREEGLVGALREEKGVEGAER
Sbjct: 61 TAEGEPIGTSSSWRKKLTAREEGLVGALREEKGVEGAER 99

BLAST of Csor.00g028400 vs. ExPASy TrEMBL
Match: A0A2P2PKS1 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.03e-10
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 0

Query: 2  TLNPGGGLSGRILPPSKSSSAEREALVQSDWRLKSNSKSCSAEQL----GDLGMPGFSSQ 60
          + NPGGG SGRILPPSKS SAER+A  +S   LKS +KS S + L    GDLG+PG SSQ
Sbjct: 25 SCNPGGGFSGRILPPSKSWSAERDAFSRS--ALKSKAKSSSIKLLLAAFGDLGVPGLSSQ 84

BLAST of Csor.00g028400 vs. ExPASy TrEMBL
Match: A0A7C8ZQL6 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.66e-05
Identity = 41/91 (45.05%), Postives = 54/91 (59.34%), Query Frame = 0

Query: 7   GGLSGRILPPSKSSSAERE--ALVQSDWRLKSNSKSCSAEQLGDLGMPGFSSQRKGTAEG 66
           GG +GRILPP KSSSAE    +++ S+  L SNSK     +    G PG  SQ KGT E 
Sbjct: 46  GGFNGRILPPEKSSSAEEREGSIIVSNCPLISNSKPSLPSE--GSGTPGSHSQLKGTTEE 105

Query: 67  EPIGTSSSWRKKLTAREE---GLVGALREEK 92
           +   ++SS R  L   EE   GLVGAL++++
Sbjct: 106 DDEWSTSS-RPPLMKEEELLRGLVGALQKKR 133

BLAST of Csor.00g028400 vs. ExPASy TrEMBL
Match: A0A7C9DQH3 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 7.19e-04
Identity = 39/88 (44.32%), Postives = 49/88 (55.68%), Query Frame = 0

Query: 7   GGLSGRILPPSKSSSAERE--ALVQSDWRLKSNSKSCSAEQLGDLGMPGFSSQRKGTAEG 66
           GG +GRILPP KSSSAE    +++ S+  L SNSK     +    G PG  SQ KGT E 
Sbjct: 46  GGFNGRILPPEKSSSAEEREGSIIVSNCPLISNSKPSLPSE--GSGTPGSHSQLKGTTEE 105

Query: 67  EPIGTSSSWRKKLTAREE---GLVGALR 89
           +   ++SS R  L   EE   GLVG  +
Sbjct: 106 DDEWSTSS-RPPLMKEEELLRGLVGVYK 130

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6571156.14.32e-61100.00hypothetical protein SDJN03_30071, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A2P2PKS11.03e-1061.90Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
A0A7C8ZQL63.66e-0545.05Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A7C9DQH37.19e-0444.32Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g028400.m01Csor.00g028400.m01mRNA